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Refactos DMP update when set to "Finalized", now sets it's Datasets status of not "Finalized" to "Canceled".

This commit is contained in:
gkolokythas 2019-06-21 14:04:29 +03:00
parent 590d85b355
commit 55407fd053
2 changed files with 48 additions and 54 deletions
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94
dmp-backend/web/src/main/java/eu/eudat/logic/managers/DataManagementPlanManager.java
View File

@ -94,7 +94,7 @@ public class DataManagementPlanManager {
DataTableData<DataManagementPlanListingModel> dataTable = new DataTableData<>();
CompletableFuture itemsFuture;
if(fieldsGroup.equals("listing")){
if (fieldsGroup.equals("listing")) {
itemsFuture = pagedItems.withHint(HintedModelFactory.getHint(DataManagementPlanListingModel.class))
.selectAsync(item -> {
@ -102,17 +102,16 @@ public class DataManagementPlanManager {
item.getDataset().stream()
.filter(dataset -> !dataset.getStatus().equals(Dataset.Status.DELETED.getValue()) && !dataset.getStatus().equals(Dataset.Status.CANCELED.getValue())).collect(Collectors.toList()).stream()
.filter(dataset -> dataset.getDmp().getUsers().stream().filter(userDMP -> userDMP.getRole().equals(UserDMP.UserDMPRoles.OWNER.getValue())).findFirst().get().getUser().getId().equals(principalID)
|| dataset.getDmp().getUsers().stream()
.filter(x -> x.getUser().getId().equals(principalID))
.collect(Collectors.toList()).size() > 0)
|| dataset.getDmp().getUsers().stream()
.filter(x -> x.getUser().getId().equals(principalID))
.collect(Collectors.toList()).size() > 0)
.collect(Collectors.toSet()));
return new DataManagementPlanListingModel().fromDataModelDatasets(item);
})
.whenComplete((resultList, throwable) -> dataTable.setData(resultList));
}
else{
} else {
itemsFuture = pagedItems
.selectAsync(item -> new DataManagementPlanListingModel().fromDataModel(item))
.selectAsync(item -> new DataManagementPlanListingModel().fromDataModel(item))
.whenComplete((resultList, throwable) -> dataTable.setData(resultList));
}
@ -131,7 +130,7 @@ public class DataManagementPlanManager {
DataTableData<DataManagementPlanListingModel> dataTable = new DataTableData<>();
CompletableFuture itemsFuture;
if(fieldsGroup.equals("listing")){
if (fieldsGroup.equals("listing")) {
itemsFuture = pagedItems.withHint(HintedModelFactory.getHint(DataManagementPlanListingModel.class))
.selectAsync(item -> {
item.setDataset(
@ -140,8 +139,7 @@ public class DataManagementPlanManager {
return new DataManagementPlanListingModel().fromDataModelDatasets(item);
})
.whenComplete((resultList, throwable) -> dataTable.setData(resultList));
}
else{
} else {
itemsFuture = pagedItems
.selectAsync(item -> new DataManagementPlanListingModel().fromDataModel(item))
.whenComplete((resultList, throwable) -> dataTable.setData(resultList));
@ -301,30 +299,13 @@ public class DataManagementPlanManager {
DataManagementPlanOverviewModel datamanagementPlan = new DataManagementPlanOverviewModel();
datamanagementPlan.fromDataModelDatasets(dataManagementPlanEntity);
/*Map dmpProperties = dataManagementPlanEntity.getDmpProperties() != null ? new org.json.JSONObject(dataManagementPlanEntity.getDmpProperties()).toMap() : null;
datamanagementPlan.setDynamicFields(dynamicProjectConfiguration.getFields().stream().map(item -> {
DynamicFieldWithValue fieldWithValue = new DynamicFieldWithValue();
fieldWithValue.setId(item.getId());
fieldWithValue.setDependencies(item.getDependencies());
fieldWithValue.setName(item.getName());
fieldWithValue.setQueryProperty(item.getQueryProperty());
fieldWithValue.setRequired(item.getRequired());
return fieldWithValue;
}).collect(Collectors.toList()));*/
/*if (dmpProperties != null && datamanagementPlan.getDynamicFields() != null)
datamanagementPlan.getDynamicFields().forEach(item -> {
Map<String, String> properties = (Map<String, String>) dmpProperties.get(item.getId());
if (properties != null)
item.setValue(new Tuple<>(properties.get("id"), properties.get("label")));
});*/
return datamanagementPlan;
}
public eu.eudat.models.data.dmp.DataManagementPlan getSinglePublic(String id, DynamicProjectConfiguration dynamicProjectConfiguration) throws Exception {
DMP dataManagementPlanEntity = databaseRepository.getDmpDao().find(UUID.fromString(id));
if (dataManagementPlanEntity != null && dataManagementPlanEntity.getStatus() == 1){
if (dataManagementPlanEntity != null && dataManagementPlanEntity.getStatus() == 1) {
eu.eudat.models.data.dmp.DataManagementPlan datamanagementPlan = new eu.eudat.models.data.dmp.DataManagementPlan();
datamanagementPlan.fromDataModel(dataManagementPlanEntity);
datamanagementPlan.setDatasets(datamanagementPlan.getDatasets().stream().filter(dataset -> dataset.getStatus() == Dataset.Status.FINALISED.getValue()).collect(Collectors.toList()));
@ -346,21 +327,19 @@ public class DataManagementPlanManager {
item.setValue(new Tuple<>(properties.get("id"), properties.get("label")));
});
return datamanagementPlan;
}
else {
} else {
throw new Exception("Selected DMP is not public");
}
}
public DataManagementPlanOverviewModel getOverviewSinglePublic(String id) throws Exception{
public DataManagementPlanOverviewModel getOverviewSinglePublic(String id) throws Exception {
DMP dataManagementPlanEntity = databaseRepository.getDmpDao().find(UUID.fromString(id));
if (dataManagementPlanEntity != null && dataManagementPlanEntity.getStatus() == 1) {
DataManagementPlanOverviewModel datamanagementPlan = new DataManagementPlanOverviewModel();
datamanagementPlan.fromDataModelDatasets(dataManagementPlanEntity);
datamanagementPlan.setDatasets(datamanagementPlan.getDatasets().stream().filter(dataset -> dataset.getStatus() == Dataset.Status.FINALISED.getValue()).collect(Collectors.toList()));
return datamanagementPlan;
}
else {
} else {
throw new Exception("Selected DMP is not public");
}
}
@ -428,14 +407,14 @@ public class DataManagementPlanManager {
if (dmp.getStatus().equals(DMP.DMPStatus.FINALISED.getValue()))
newDmp.setStatus(DMP.DMPStatus.FINALISED.getValue());
try {
newDmp.setCreated(dmp.getCreated());
if (dmp.getUsers().stream().filter(userInfo -> userInfo.getUser().getId() == principal.getId())
.collect(Collectors.toList()).size() == 0) {
List<UserDMP> userDMPList = dmp.getUsers().stream().collect(Collectors.toList());
for (UserInfoListingModel userInfoListingModel : dataManagementPlan.getUsers()) {
for(UserDMP userDMP : userDMPList) {
for (UserDMP userDMP : userDMPList) {
if (!(userDMP.getUser().getId().equals(userInfoListingModel.getId()))) {
apiContext.getOperationsContext().getDatabaseRepository().getUserDmpDao().delete(userDMP);
}
@ -450,9 +429,18 @@ public class DataManagementPlanManager {
if (dataManagementPlan.getStatus() == DMP.DMPStatus.FINALISED.getValue()) {
apiContext.getOperationsContext().getDatabaseRepository().getDatasetDao()
.asQueryable().where((builder, root) -> root.get("id").in(dataManagementPlan.getDatasets()
.stream().map(x -> UUID.fromString(x.getId())).collect(Collectors.toList())))
.asQueryable().where((builder, root) -> root.get("id").in(dataManagementPlan.getDatasetsToBeFinalized()))
.update(root -> root.<Integer>get("status"), Dataset.Status.FINALISED.getValue());
List<UUID> datasetsToBeCanceled = new LinkedList<>();
for (Dataset dataset : dmp.getDataset()) {
if (!dataset.getStatus().equals(Dataset.Status.FINALISED.getValue()) && !dataManagementPlan.getDatasetsToBeFinalized().contains(dataset.getId())) {
datasetsToBeCanceled.add(dataset.getId());
}
}
apiContext.getOperationsContext().getDatabaseRepository().getDatasetDao()
.asQueryable().where((builder, root) -> root.get("id").in(datasetsToBeCanceled))
.update(root -> root.<Integer>get("status"), Dataset.Status.CANCELED.getValue());
}
if (dataManagementPlan.getAssociatedUsers().size() == 0)
@ -478,7 +466,7 @@ public class DataManagementPlanManager {
QueryableList<DMP> dataManagementPlanQueryableList = apiContext.getOperationsContext().getDatabaseRepository().getDmpDao().getWithCriteria(criteria);
List<DMP> latestVersionDMP = dataManagementPlanQueryableList.toList();
if(latestVersionDMP.get(0).getVersion().equals(oldDmp.getVersion())){
if (latestVersionDMP.get(0).getVersion().equals(oldDmp.getVersion())) {
DMP newDmp = dataManagementPlan.toDataModel();
createOrganisationsIfTheyDontExist(newDmp, apiContext.getOperationsContext().getDatabaseRepository().getOrganisationDao());
createResearchersIfTheyDontExist(newDmp, apiContext.getOperationsContext().getDatabaseRepository().getResearcherDao());
@ -528,7 +516,7 @@ public class DataManagementPlanManager {
DatasetCriteria criteria = new DatasetCriteria();
List<UUID> dmpIds = Collections.singletonList(uuid);
criteria.setDmpIds(dmpIds);
if (apiContext.getOperationsContext().getDatabaseRepository().getDatasetDao().getWithCriteria(criteria).toList().size()>0)
if (apiContext.getOperationsContext().getDatabaseRepository().getDatasetDao().getWithCriteria(criteria).toList().size() > 0)
throw new DMPWithDatasetsDeleteException("You cannot Remove Datamanagement Plan with Datasets");
DMP oldDmp = apiContext.getOperationsContext().getDatabaseRepository().getDmpDao().find(uuid);
oldDmp.setStatus(DMP.DMPStatus.DELETED.getValue());
@ -654,7 +642,7 @@ public class DataManagementPlanManager {
DMPProfile dmpProfile = dmp.getProfile();
Element dmpProfileElement = xmlDoc.createElement("dmpProfile");
Element dmpProfileName = xmlDoc.createElement("dmpProfileName");
if (!(dmpProfile == null)){
if (!(dmpProfile == null)) {
dmpProfileName.setTextContent(dmpProfile.getLabel());
dmpProfileElement.appendChild(dmpProfileName);
Element dmpProfileId = xmlDoc.createElement("dmpProfileId");
@ -742,7 +730,7 @@ public class DataManagementPlanManager {
return fileEnvelope;
}
public ResponseEntity<byte[]> getRDAJsonDocument(String id) throws IOException {
public ResponseEntity<byte[]> getRDAJsonDocument(String id) throws IOException {
eu.eudat.data.entities.DMP dmp = databaseRepository.getDmpDao().find(UUID.fromString(id));
DmpRDAExportModel dmpExport = new DmpRDAExportModel().fromDataModel(dmp);
RDAExportModel rdaExportModel = new RDAExportModel();
@ -754,8 +742,7 @@ public class DataManagementPlanManager {
File file = new File(fileName);
try {
mapper.writeValue(file, rdaExportModel);
}
catch (IOException e) {
} catch (IOException e) {
e.printStackTrace();
}
@ -775,7 +762,7 @@ public class DataManagementPlanManager {
public ResponseEntity<byte[]> getDocument(String id, String contentType) throws InstantiationException, IllegalAccessException, IOException {
File file;
switch (contentType){
switch (contentType) {
case "application/xml":
file = getXmlDocument(id).getFile();
break;
@ -804,20 +791,19 @@ public class DataManagementPlanManager {
HttpStatus.OK);
}
public List<DmpImportModel> createDmpFromXml( ApiContext apiContext, MultipartFile[] files, Principal principal) throws IOException, JAXBException, Exception {
public List<DmpImportModel> createDmpFromXml(ApiContext apiContext, MultipartFile[] files, Principal principal) throws IOException, JAXBException, Exception {
List<DmpImportModel> dataManagementPlans = new ArrayList<>();
// Jaxb approach.
JAXBContext jaxbContext;
for (MultipartFile multipartFile : Arrays.asList(files)){ // Gets one item from the array.
try{
for (MultipartFile multipartFile : Arrays.asList(files)) { // Gets one item from the array.
try {
InputStream in = multipartFile.getInputStream(); // Transforms item to InputStream.
jaxbContext = JAXBContext.newInstance(DmpImportModel.class);
Unmarshaller jaxbUnmarshaller = jaxbContext.createUnmarshaller();
DmpImportModel dmpImportModel = (DmpImportModel)jaxbUnmarshaller.unmarshal(in);
DmpImportModel dmpImportModel = (DmpImportModel) jaxbUnmarshaller.unmarshal(in);
dataManagementPlans.add(dmpImportModel);
}
catch (IOException | JAXBException ex){
} catch (IOException | JAXBException ex) {
ex.printStackTrace();
}
// TODO Iterate through the list of dataManagmentPlans.
@ -844,21 +830,21 @@ public class DataManagementPlanManager {
project.setAbbreviation(projectImport.getAbbreviation());
project.setDescription(projectImport.getDescription());
List<eu.eudat.models.data.dmp.AssociatedProfile> associatedProfiles = new LinkedList<>();
for(AssociatedProfileImportModels a : dataManagementPlans.get(0).getProfilesImportModels()) {
for (AssociatedProfileImportModels a : dataManagementPlans.get(0).getProfilesImportModels()) {
AssociatedProfile associatedProfile = new AssociatedProfile();
associatedProfile.setId(a.getId());
associatedProfile.setLabel(a.getLabel());
associatedProfiles.add(associatedProfile);
}
List< eu.eudat.models.data.dmp.Organisation > organisations = new ArrayList<>();
for(OrganisationImportModel org : dataManagementPlans.get(0).getOrganisationImportModels()) {
List<eu.eudat.models.data.dmp.Organisation> organisations = new ArrayList<>();
for (OrganisationImportModel org : dataManagementPlans.get(0).getOrganisationImportModels()) {
eu.eudat.models.data.dmp.Organisation organisation = new eu.eudat.models.data.dmp.Organisation();
organisation.setLabel(org.getOrganaisationNameImport());
organisation.setId(org.getOrganaisationReferenceImport());
organisations.add(organisation);
}
List<eu.eudat.models.data.dmp.Researcher> researchers = new LinkedList<>();
for(ResearcherImportModels res : dataManagementPlans.get(0).getResearchersImportModels()) {
for (ResearcherImportModels res : dataManagementPlans.get(0).getResearchersImportModels()) {
eu.eudat.models.data.dmp.Researcher researcher = new eu.eudat.models.data.dmp.Researcher();
researcher.setLabel(res.getResearcherImportName());
researcher.setId(res.getResearcherImportReference());

8
dmp-backend/web/src/main/java/eu/eudat/models/data/dmp/DataManagementPlanEditorModel.java
View File

@ -37,6 +37,7 @@ public class DataManagementPlanEditorModel implements DataModel<DMP, DataManagem
private List<DynamicFieldWithValue> dynamicFields;
private Map<String, Object> properties;
private List<UserInfoListingModel> users;
private List<UUID> datasetsToBeFinalized;
public UUID getId() {
return id;
@ -185,6 +186,13 @@ public class DataManagementPlanEditorModel implements DataModel<DMP, DataManagem
this.users = users;
}
public List<UUID> getDatasetsToBeFinalized() {
return datasetsToBeFinalized;
}
public void setDatasetsToBeFinalized(List<UUID> datasetsToBeFinalized) {
this.datasetsToBeFinalized = datasetsToBeFinalized;
}
@Override
public DataManagementPlanEditorModel fromDataModel(DMP entity) {
this.id = entity.getId();