Merge remote-tracking branch 'origin/Development' into Development

dmp-backend/web/src/main/java/eu/eudat/logic/mapper/prefilling/PrefillingMapper.java

@@ -20,9 +20,12 @@ import eu.eudat.models.data.datasetprofile.DatasetProfileOverviewModel;
 import eu.eudat.models.data.datasetprofile.RenderStyle;
 import eu.eudat.models.data.datasetwizard.DatasetWizardModel;
 import eu.eudat.models.data.externaldataset.ExternalAutocompleteFieldModel;
+import org.json.JSONObject;
 
 import java.lang.reflect.InvocationTargetException;
 import java.lang.reflect.Method;
+import java.time.LocalDate;
+import java.time.format.DateTimeFormatter;
 import java.util.*;
 import java.util.stream.Collectors;
 
@@ -67,6 +70,11 @@ public class PrefillingMapper {
                 //GK: Tags Special logic
                 if (!value.equals("null") && prefillingMapping.getTarget().equals("tags")) {
                     value = mapper.valueToTree(parseTags(value)).toString();
+                    List<JsonNode> nodes = JsonSearcher.findNodes(parentNode, "rdaProperty", "dataset.keyword");
+                    for (JsonNode node: nodes) {
+                        String id = node.get(0) != null ? node.get(0).get("id").asText() : node.get("id").asText();
+                        properties.put(id, value);
+                    }
                 }
                 setterMethod.invoke(datasetWizardModel, mapper.readValue(value, params[0]));
             }catch (InvocationTargetException | IllegalAccessException | JsonProcessingException e) {
@@ -74,12 +82,6 @@ public class PrefillingMapper {
             }
         } else {
             List<JsonNode> nodes = JsonSearcher.findNodes(parentNode, "rdaProperty", prefillingMapping.getMaDmpTarget());
-            /*if(prefillingMapping.getMaDmpTarget().equals("dataset.distribution.available_until") && !value.equals("null")){
-                DateTimeFormatter formatter = DateTimeFormatter.ofPattern("uuuu-MM-dd");
-                LocalDate date = LocalDate.parse(value.replace("\"", ""), formatter);
-                date = date.plusYears(20);
-                value = date.toString();
-            }*/
             String trimRegex = prefillingMapping.getTrimRegex() != null ? prefillingMapping.getTrimRegex() : "";
             if (!value.startsWith("\"") && !value.startsWith("[") && !value.equals("null")) {
                 value = "\"" + value + "\"";
@@ -112,7 +114,27 @@ public class PrefillingMapper {
                     case COMBO_BOX:
                         if (parsedValues.isEmpty())
                             parsedValues.add(parsedValue);
-                        properties.put(id, parseComboBoxValues(node, parsedValues));
+                        if(prefillingMapping.getMaDmpTarget().equals("dataset.distribution.data_access")){
+                            if(parsedValue != null && parsedValue.equals("open")){
+                                properties.put(id, parsedValue);
+                                List<JsonNode> issuedNodes = JsonSearcher.findNodes(parentNode, "rdaProperty", "dataset.issued");
+                                String issuedIdNode = issuedNodes.get(0).get("id").asText();
+                                String issuedValue = (String)properties.get(issuedIdNode);
+                                List<JsonNode> licStartDateNodes = JsonSearcher.findNodes(parentNode, "rdaProperty", "dataset.distribution.license.start_date");
+                                for (JsonNode licStartDateNode: licStartDateNodes) {
+                                    String licStartDateId = licStartDateNode.get(0) != null ? licStartDateNode.get(0).get("id").asText() : licStartDateNode.get("id").asText();
+                                    properties.put(licStartDateId, issuedValue);
+                                }
+                            }
+                            else if(parsedValue != null && parsedValue.equals("restricted")){
+                                properties.put(id, "shared");
+                            }
+                            else{
+                                properties.put(id, "closed");
+                            }
+                        }
+                        else
+                            properties.put(id, parseComboBoxValues(node, parsedValues));
                         break;
                     case TAGS:
                         properties.put(id, parseTags(parsedValue));
@@ -120,22 +142,25 @@ public class PrefillingMapper {
                     default:
                         if (!parsedValues.isEmpty())
                             properties.put(id, String.join(", ", parsedValues));
-                        else
+                        else {
-                            properties.put(id, parsedValue);
+                            if (prefillingMapping.getMaDmpTarget().equals("dataset.dataset_id")) {
+                                JSONObject datasetID = new JSONObject();
+                                datasetID.put("identifier", parsedValue);
+                                datasetID.put("type", "doi");
+                                properties.put(id, datasetID.toString());
+                            }
+                            else {
+                                if (prefillingMapping.getMaDmpTarget().equals("dataset.distribution.available_until") && parsedValue != null && !parsedValue.equals("null")) {
+                                    DateTimeFormatter formatter = DateTimeFormatter.ofPattern("uuuu-MM-dd");
+                                    LocalDate date = LocalDate.parse(parsedValue, formatter);
+                                    date = date.plusYears(20);
+                                    parsedValue = date.toString();
+                                }
+                                properties.put(id, parsedValue);
+                            }
+                        }
                         break;
                 }
-                /*if(prefillingMapping.getMaDmpTarget().equals("dataset.distribution.data_access")){
-                    value = value.replace("\"", "");
-                    if(value.equals("open")){
-                        properties.put(id, value);
-                    }
-                    else if(value.equals("restricted")){
-                        properties.put(id, "shared");
-                    }
-                    else{
-                        properties.put(id, "closed");
-                    }
-                }*/
             }
         }
     }

dmp-backend/web/src/main/resources/externalUrls/ExternalUrls.xml

@@ -1187,16 +1187,26 @@ but not
                     <mapping source="metadata.filesize" maDmpTarget="dataset.distribution.byte_size"/>
                     <mapping source="metadata.language" maDmpTarget="dataset.metadata.language"/>
                     <mapping source="metadata.dates.valid" maDmpTarget="dataset.distribution.available_until"/>
-                    <mapping source="metadata.access_right" maDmpTarget="dataset.distribution.data_access"/>
-                    <mapping source="metadata.publication_date" maDmpTarget="dataset.issued"/>
                     <mapping source="metadata.license.created" maDmpTarget="dataset.distribution.license.start_date"/>
                     <mapping source="metadata.embargo_date" maDmpTarget="dataset.distribution.license.start_date"/>
+                    <mapping source="metadata.publication_date" maDmpTarget="dataset.issued"/>
+                    <mapping source="metadata.access_right" maDmpTarget="dataset.distribution.data_access"/>
                     <mapping source="files" subSource="filename" trimRegex="^.*\." maDmpTarget="dataset.distribution.format"/>
+                    <mapping source="doi" maDmpTarget="dataset.dataset_id" />
+                    <mapping source="doi" maDmpTarget="dataset.dataset_id.identifier" />
                 </mappings>
                 <fixedMappings>
                     <fixedMapping maDmpTarget="dataset.distribution.host.title" value="Zenodo" />
+                    <fixedMapping maDmpTarget="dataset.distribution.host.availability" value="More than 99% uptime yearly" />
+                    <fixedMapping maDmpTarget="dataset.distribution.host.geo_location" value="CH" />
+                    <fixedMapping maDmpTarget="dataset.distribution.host.storage_type" value="All files uploaded to Zenodo are stored in CERN’s EOS service in an 18 petabytes disk cluster." />
+                    <fixedMapping maDmpTarget="dataset.dataset_id.type" value="doi" />
                     <fixedMapping maDmpTarget="dataset.metadata.metadata_standard_id.identifier" value="https://schema.datacite.org/meta/kernel-4.4/" />
                     <fixedMapping maDmpTarget="dataset.metadata.metadata_standard_id.type" value="url" />
+                    <fixedMapping maDmpTarget="dataset.metadata.language" value="eng" />
+                    <fixedMapping maDmpTarget="dataset.metadata.description" value="DataCite Metadata Schema" />
+                    <fixedMapping maDmpTarget="dataset.distribution.host.backup_frequency" value="Hourly" />
+                    <fixedMapping maDmpTarget="dataset.distribution.host.backup_type" value="Incremental backup" />
                     <fixedMapping maDmpTarget="dataset.distribution.host.description" value="Repository hosted by Zenodo" />
                     <fixedMapping maDmpTarget="dataset.distribution.host.url" value="https://zenodo.org" />
                     <fixedMapping maDmpTarget="dataset.distribution.host.pid_system" value="doi" />