Merge branch 'master' of https://gitlab.eudat.eu/dmp/OpenAIRE-EUDAT-DMP-service-pilot

dmp-backend/src/main/java/dao/entities/UserInfoDao.java

@@ -1,9 +1,9 @@
-package dao.entities.security;
+package dao.entities;
 
 import java.util.UUID;
 
 import dao.Dao;
-import entities.security.UserInfo;
+import entities.UserInfo;
 
 public interface UserInfoDao extends Dao<UserInfo, UUID> {
 

dmp-backend/src/main/java/dao/entities/UserInfoDaoImpl.java

@@ -1,4 +1,4 @@
-package dao.entities.security;
+package dao.entities;
 
 import java.util.List;
 import java.util.UUID;
@@ -7,8 +7,8 @@ import javax.persistence.NoResultException;
 import javax.persistence.TypedQuery;
 
 import dao.JpaDao;
+import entities.UserInfo;
 import entities.security.UserAuth;
-import entities.security.UserInfo;
 
 
 public class UserInfoDaoImpl extends JpaDao<UserInfo, UUID> implements UserInfoDao {

dmp-backend/src/main/java/entities/DMP.java

@@ -88,6 +88,14 @@ public class DMP implements Serializable {
     private Set<Researcher> researchers;
 	
 	
+//	@OneToMany(fetch = FetchType.EAGER)
+//    @JoinTable(name="\"UserDMP\"",
+//    		joinColumns={@JoinColumn(name="dmp", referencedColumnName="\"ID\"")},
+//    	    inverseJoinColumns={@JoinColumn(name="user", referencedColumnName="\"ID\"")}
+//    )
+//    private Set<UserInfo> users;
+	
+	
 	public UUID getId() {
 		return id;
 	}
@@ -168,6 +176,15 @@ public class DMP implements Serializable {
 		this.researchers = researchers;
 	}
 	
+
+//	public Set<UserInfo> getUsers() {
+//		return users;
+//	}
+//
+//	public void setUsers(Set<UserInfo> users) {
+//		this.users = users;
+//	}
+
 	public String toString() {
 		try {
 			return new ObjectMapper().enable(SerializationFeature.INDENT_OUTPUT).writeValueAsString(this);

dmp-backend/src/main/java/entities/UserDMP.java

@@ -0,0 +1,76 @@
+//package entities;
+//
+//import java.io.Serializable;
+//import java.util.UUID;
+//
+//import javax.persistence.Column;
+//import javax.persistence.Entity;
+//import javax.persistence.GeneratedValue;
+//import javax.persistence.Id;
+//import javax.persistence.Table;
+//
+//import org.hibernate.annotations.GenericGenerator;
+//import org.hibernate.annotations.Type;
+//
+//import com.fasterxml.jackson.annotation.JsonIdentityInfo;
+//import com.fasterxml.jackson.annotation.ObjectIdGenerators;
+//
+//@Entity
+//@Table(name="\"UserInfo\"")
+//@JsonIdentityInfo(generator=ObjectIdGenerators.PropertyGenerator.class, property="autoid")
+//public class UserDMP implements Serializable{
+//
+//	private static final long serialVersionUID = -4467370784003784660L;
+//
+//	
+//	@Id
+//	@GeneratedValue
+//    @GenericGenerator(name = "uuid2", strategy = "uuid2")
+//    @Column(name = "id", updatable = false, nullable = false, columnDefinition = "BINARY(16)")
+//	private UUID id;
+//	
+//	@Type(type="org.hibernate.type.PostgresUUIDType") //DEPWARN dependency to Hibernate and PostgreSQL
+//	@Column(name = "user", nullable = false)
+//	private UUID user;
+//    
+//	@Type(type="org.hibernate.type.PostgresUUIDType") //DEPWARN dependency to Hibernate and PostgreSQL
+//	@Column(name = "dmp", nullable = false)
+//	private UUID dmp;
+//
+//	@Column(name = "role")
+//	private Integer role;
+//
+//	public UUID getId() {
+//		return id;
+//	}
+//
+//	public void setId(UUID id) {
+//		this.id = id;
+//	}
+//
+//	public UUID getUser() {
+//		return user;
+//	}
+//
+//	public void setUser(UUID user) {
+//		this.user = user;
+//	}
+//
+//	public UUID getDmp() {
+//		return dmp;
+//	}
+//
+//	public void setDmp(UUID dmp) {
+//		this.dmp = dmp;
+//	}
+//
+//	public Integer getRole() {
+//		return role;
+//	}
+//
+//	public void setRole(Integer role) {
+//		this.role = role;
+//	}
+//	
+//	
+//}

dmp-backend/src/main/java/entities/UserInfo.java

@@ -1,7 +1,8 @@
-package entities.security;
+package entities;
 
 import java.io.Serializable;
 import java.util.Date;
+import java.util.Set;
 import java.util.UUID;
 
 import javax.persistence.Column;
@@ -10,6 +11,8 @@ import javax.persistence.FetchType;
 import javax.persistence.GeneratedValue;
 import javax.persistence.Id;
 import javax.persistence.JoinColumn;
+import javax.persistence.JoinTable;
+import javax.persistence.OneToMany;
 import javax.persistence.OneToOne;
 import javax.persistence.Table;
 import javax.persistence.Temporal;
@@ -21,10 +24,12 @@ import org.hibernate.annotations.Type;
 import com.fasterxml.jackson.annotation.JsonIdentityInfo;
 import com.fasterxml.jackson.annotation.ObjectIdGenerators;
 
+import entities.security.UserAuth;
+
 
 @Entity
 @Table(name="\"UserInfo\"")
-@JsonIdentityInfo(generator=ObjectIdGenerators.PropertyGenerator.class, property="autoid")
+@JsonIdentityInfo(generator=ObjectIdGenerators.PropertyGenerator.class, property="id")
 public class UserInfo implements Serializable{
 
 	private static final long serialVersionUID = 1225151430484658395L;
@@ -32,13 +37,10 @@ public class UserInfo implements Serializable{
 	@Id
 	@GeneratedValue
     @GenericGenerator(name = "uuid2", strategy = "uuid2")
-    @Column(name = "autoid", updatable = false, nullable = false, columnDefinition = "BINARY(16)")
+    @Column(name = "id", updatable = false, nullable = false, columnDefinition = "BINARY(16)")
-	private UUID autoid;
+	private UUID id;
 	
 	
-	@Column(name = "identification", nullable = false)
-	private String identification = null;
-	
 	@Column(name = "email", nullable = false)
 	private String email = null;
 	
@@ -71,12 +73,37 @@ public class UserInfo implements Serializable{
 	@Column(name = "additionalinfo", columnDefinition = "xml", nullable = true)
 	private String additionalinfo;
 
-	public String getIdentification() {
+//	@OneToMany(fetch = FetchType.EAGER)
-		return identification;
+//    @JoinTable(name="\"UserDMP\"", 
+//    		joinColumns={@JoinColumn(name="user", referencedColumnName="\"ID\"")},
+//    	    inverseJoinColumns={@JoinColumn(name="dmp", referencedColumnName="\"ID\"")}
+//    )  
+//    private Set<UserInfo> users;
+	
+	
+	
+	public UUID getId() {
+		return id;
 	}
 
-	public void setIdentification(String identification) {
+	public void setId(UUID id) {
-		this.identification = identification;
+		this.id = id;
+	}
+
+	public Date getCreated() {
+		return created;
+	}
+
+	public void setCreated(Date created) {
+		this.created = created;
+	}
+
+	public Date getLastloggedin() {
+		return lastloggedin;
+	}
+
+	public void setLastloggedin(Date lastloggedin) {
+		this.lastloggedin = lastloggedin;
 	}
 
 	public String getEmail() {

dmp-backend/src/main/java/login/Login.java

@@ -21,10 +21,10 @@ import org.springframework.web.bind.annotation.RestController;
 import com.fasterxml.jackson.core.JsonProcessingException;
 import com.fasterxml.jackson.databind.ObjectMapper;
 
+import dao.entities.UserInfoDao;
 import dao.entities.security.UserAuthDao;
-import dao.entities.security.UserInfoDao;
+import entities.UserInfo;
 import entities.security.UserAuth;
-import entities.security.UserInfo;
 import security.TokenSessionManager;
 
 

dmp-backend/src/main/java/proxy/Proxy.java

@@ -1,4 +1,4 @@
-package rest.proxy;
+package proxy;
 
 import java.io.BufferedReader;
 import java.io.IOException;
@@ -57,12 +57,12 @@ public class Proxy {
 				while ((inputLine = in.readLine()) != null)
 					response.append(inputLine);
 				in.close();
-			} else {
+				return ResponseEntity.status(HttpStatus.OK).body(response.toString());
+			} 
+			else {
 				return ResponseEntity.status(HttpStatus.FORBIDDEN).body("{'reason': 'Remote server responded with: "+responseCode+"'}");
 			}
 			
-			return ResponseEntity.status(HttpStatus.OK).body(response.toString());
-			
 		} catch (IOException | URISyntaxException e) {
 			return ResponseEntity.status(HttpStatus.INTERNAL_SERVER_ERROR).body("{'reason': 'Could not proxy to given host'}");
 		}

dmp-backend/src/main/java/rest/entities/Datasets.java

@@ -257,6 +257,7 @@ public class Datasets  {
 		try {
 			return ResponseEntity.status(HttpStatus.CREATED).body(objectMapper.writeValueAsString(createdDatasetProfile));
 		} catch (JsonProcessingException e) {
+			e.printStackTrace();
 			return ResponseEntity.status(HttpStatus.INTERNAL_SERVER_ERROR).body("{\"msg\":\"Could not set dataset profile!\"}");
 		}
 		

dmp-backend/src/main/java/rest/entities/Projects.java

@@ -132,6 +132,7 @@ public class Projects  {
 	}
 	
 	
+	
 	@Transactional
 	@RequestMapping(method = RequestMethod.POST, value = { "/project/create" }, consumes = "application/json", produces="application/json")
 	public @ResponseBody ResponseEntity<Object> setProject(@RequestBody Project project) {

dmp-backend/src/main/java/security/CustomAuthenticationProvider.java

@@ -12,8 +12,8 @@ import org.springframework.security.core.Authentication;
 import org.springframework.security.core.AuthenticationException;
 import org.springframework.stereotype.Component;
 
-import dao.entities.security.UserInfoDao;
+import dao.entities.UserInfoDao;
-import entities.security.UserInfo;
+import entities.UserInfo;
 import exceptions.NonValidTokenException;
 import security.validators.GoogleTokenValidator;
 import security.validators.NativeTokenValidator;
@@ -64,7 +64,6 @@ public class CustomAuthenticationProvider implements AuthenticationProvider {
 		else
 			throw new AuthenticationServiceException("Authentication failed");
 		
-		
 	}
 
 	@Override

dmp-backend/src/main/java/security/validators/GoogleTokenValidator.java

@@ -12,7 +12,7 @@ import com.google.api.client.http.HttpTransport;
 import com.google.api.client.http.javanet.NetHttpTransport;
 import com.google.api.client.json.jackson2.JacksonFactory;
 
-import entities.security.UserInfo;
+import entities.UserInfo;
 import exceptions.NonValidTokenException;
 
 public class GoogleTokenValidator implements TokenValidator {

dmp-backend/src/main/webapp/WEB-INF/applicationContext.xml

@@ -31,7 +31,7 @@
 	<bean id="nativeTokenValidator" class="security.validators.NativeTokenValidator" />
 	
 	
-	<bean id="proxy" class="rest.proxy.Proxy">
+	<bean id="proxy" class="proxy.Proxy">
 		<constructor-arg type = "String" value = "${proxy.allowed.host}"/>
 	</bean>
 	
@@ -100,7 +100,7 @@
 	<bean id="registryDao" class="dao.entities.RegistryDaoImpl" />
 	<bean id="researcherDao" class="dao.entities.ResearcherDaoImpl" />
 	<bean id="serviceDao" class="dao.entities.ServiceDaoImpl" />
-	<bean id="userInfoDao" class="dao.entities.security.UserInfoDaoImpl" />
+	<bean id="userInfoDao" class="dao.entities.UserInfoDaoImpl" />
 	<bean id="userAuthDao" class="dao.entities.security.UserAuthDaoImpl" />
 
 

dmp-backend/src/main/webapp/WEB-INF/dmp-backend-login-servlet.xml

@@ -10,7 +10,7 @@
  						http://www.springframework.org/schema/beans/spring-beans-4.1.xsd">
 	
 	
-<!-- 	<context:property-placeholder location="classpath*:**/dmp.properties" /> -->
+	<context:property-placeholder location="classpath*:**/dmp.properties" />
 	
 	<mvc:resources mapping="resources/**" location="/resources/" />
 	<mvc:annotation-driven />

dmp-backend/src/main/webapp/WEB-INF/dmp-backend-proxy-servlet.xml

@@ -0,0 +1,44 @@
+<?xml version="1.0" encoding="UTF-8" ?>
+<beans xmlns="http://www.springframework.org/schema/beans"
+	xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:mvc="http://www.springframework.org/schema/mvc"
+	xmlns:context="http://www.springframework.org/schema/context"
+	xsi:schemaLocation="http://www.springframework.org/schema/mvc
+ 						http://www.springframework.org/schema/mvc/spring-mvc-4.1.xsd
+ 						http://www.springframework.org/schema/context
+ 						http://www.springframework.org/schema/context/spring-context-4.1.xsd
+ 						http://www.springframework.org/schema/beans
+ 						http://www.springframework.org/schema/beans/spring-beans-4.1.xsd">
+	
+	
+	<context:property-placeholder location="classpath*:**/dmp.properties" />
+	
+	<mvc:resources mapping="resources/**" location="/resources/" />
+	<mvc:annotation-driven />
+	<context:component-scan base-package="proxy" />
+
+
+	<bean id="proxy" class="proxy.Proxy">
+		<constructor-arg type = "String" value = "${proxy.allowed.host}"/>
+	</bean>
+
+	<bean id="multipartResolver"
+		class="org.springframework.web.multipart.commons.CommonsMultipartResolver">
+		<property name="maxUploadSize" value="100000000" />
+	</bean>
+
+	<bean id="jsonConverter"
+		class="org.springframework.http.converter.json.MappingJackson2HttpMessageConverter">
+		<property name="prefixJson" value="false" />
+		<property name="supportedMediaTypes" value="application/json" />
+	</bean>
+
+	<bean
+		class="org.springframework.web.servlet.mvc.annotation.AnnotationMethodHandlerAdapter">
+		<property name="messageConverters">
+			<list>
+				<ref bean="jsonConverter" />
+			</list>
+		</property>
+	</bean>
+
+</beans>

dmp-backend/src/main/webapp/WEB-INF/dmp-backend-rest-servlet.xml

@@ -16,9 +16,7 @@
 	<mvc:annotation-driven />
 	<context:component-scan base-package="rest" />
 	
-	<bean id="proxy" class="rest.proxy.Proxy">
+
-		<constructor-arg type = "String" value = "${proxy.allowed.host}"/>
-	</bean>
 	
 	<bean
 		class="org.springframework.web.servlet.view.InternalResourceViewResolver">

dmp-backend/src/main/webapp/WEB-INF/web.xml

@@ -3,6 +3,19 @@
   
   <display-name>dmp-backend</display-name>
   
+  <servlet>
+    <servlet-name>dmp-backend-proxy</servlet-name>
+    <servlet-class>org.springframework.web.servlet.DispatcherServlet</servlet-class>
+    <load-on-startup>1</load-on-startup>
+  </servlet>
+  <servlet-mapping>
+    <servlet-name>dmp-backend-proxy</servlet-name>
+    <url-pattern>/proxy/*</url-pattern>
+  </servlet-mapping>
+  <listener>
+    <listener-class>org.springframework.web.context.ContextLoaderListener</listener-class>
+  </listener>
+  
   
   <servlet>
     <servlet-name>dmp-backend-login</servlet-name>

dmp-db-scema/DataManagementPlanDB.sql

@@ -25,7 +25,10 @@ drop table if exists "Registry" cascade;
 drop table if exists "DatasetService" cascade;
 drop table if exists "DatasetRegistry" cascade;
 drop table if exists "DatasetDataRepository" cascade;
-drop table if exists "UserInfo" cascade;
+DROP table if exists "UserDMP" cascade;
+DROP table if exists "UserInfo" cascade;
+DROP table if exists "UserAuth" cascade;
+
 
 
 -- CREATE EXTENSION IF NOT EXISTS plpgsql WITH SCHEMA pg_catalog;
@@ -447,12 +450,13 @@ ALTER TABLE ONLY "DatasetService"
     ADD CONSTRAINT "DatasetServiceServiceReference" FOREIGN KEY ("Service") REFERENCES "Service"("ID");
 
 
+DROP table if exists "UserDMP";
 DROP table if exists "UserInfo";
+DROP table if exists "UserAuth";
 
 CREATE TABLE "UserInfo" (
-    "autoid" uuid  DEFAULT uuid_generate_v4() NOT NULL,
+    "id" uuid  DEFAULT uuid_generate_v4() UNIQUE NOT NULL,
-    "identification" character varying(500) NOT NULL,
+    "email" character varying(250) UNIQUE NOT NULL,
-    "email" character varying(250) NOT NULL,
     "authorization_level" smallint NOT NULL,
     "usertype" smallint NOT NULL,
     "authentication" uuid,
@@ -461,15 +465,13 @@ CREATE TABLE "UserInfo" (
     "created" timestamp,
     "lastloggedin" timestamp,
     "additionalinfo" xml,
-    PRIMARY KEY (identification, email)
+    PRIMARY KEY (id)
 );
 
 COMMENT ON COLUMN "UserInfo"."authorization_level" IS 'This stores the authorization level of the user: 0 admin, 1 user, being able to be extended furthermore';
 COMMENT ON COLUMN "UserInfo"."usertype" IS 'This stores the type of user: 0 -> internal, 1 external';
 
 
-DROP table if exists "UserAuth";
-
 CREATE TABLE "UserAuth" (
     "id" uuid  DEFAULT uuid_generate_v4() NOT NULL UNIQUE,
     "username" character varying(200) NOT NULL,
@@ -483,8 +485,21 @@ ALTER TABLE "UserInfo" ADD CONSTRAINT fkey_userinfo_userauth FOREIGN KEY ("authe
 
 COMMENT ON COLUMN "UserAuth"."password" IS 'This field stores a password hash';
 
+
+create table "UserDMP" (
+   "id" uuid  DEFAULT uuid_generate_v4() NOT NULL,
+   "user" uuid NOT NULL,
+   "dmp" uuid NOT NUll,
+   "role" integer
+);
+
+ALTER TABLE "UserDMP" ADD CONSTRAINT fkey_userdmp_user FOREIGN KEY ("user") REFERENCES "UserInfo"("id");
+ALTER TABLE "UserDMP" ADD CONSTRAINT fkey_userdmp_dmp FOREIGN KEY ("dmp") REFERENCES "DMP"("ID");
+
+
 ALTER TABLE "UserInfo" OWNER TO dmptool;
 ALTER TABLE "UserAuth" OWNER TO dmptool;
+ALTER TABLE "UserDMP" OWNER TO dmptool;