Swagger fixes and additions
This commit is contained in:
parent
bba4834e21
commit
2712a3d20e
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@ -14,7 +14,7 @@ import io.swagger.v3.oas.annotations.tags.Tag;
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import org.opencdmp.audit.AuditableAction;
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import org.opencdmp.controllers.swagger.SwaggerHelpers;
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import org.opencdmp.controllers.swagger.annotation.OperationWithTenantHeader;
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import org.opencdmp.model.Lock;
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import org.opencdmp.controllers.swagger.annotation.SwaggerCommonErrorResponses;
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import org.opencdmp.model.Tenant;
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import org.opencdmp.models.Account;
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import org.opencdmp.models.AccountBuilder;
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@ -32,12 +32,17 @@ import java.util.List;
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@RestController
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@RequestMapping("/api/principal/")
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@Tag(name = "Principal", description = "Get user account information")
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@SwaggerCommonErrorResponses
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public class PrincipalController {
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private static final LoggerService logger = new LoggerService(LoggerFactory.getLogger(PrincipalController.class));
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private final AuditService auditService;
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private final CurrentPrincipalResolver currentPrincipalResolver;
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private final AccountBuilder accountBuilder;
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private final TenantService tenantService;
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@Autowired
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@ -51,7 +56,7 @@ public class PrincipalController {
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this.tenantService = tenantService;
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}
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@RequestMapping(path = "me", method = RequestMethod.GET )
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@RequestMapping(path = "me", method = RequestMethod.GET)
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@OperationWithTenantHeader(summary = "Fetch auth information of the logged in user", description = "",
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responses = @ApiResponse(description = "OK", responseCode = "200", content = @Content(
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schema = @Schema(
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@ -12,7 +12,6 @@ import gr.cite.tools.fieldset.FieldSet;
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import gr.cite.tools.logging.LoggerService;
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import gr.cite.tools.logging.MapLogEntry;
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import gr.cite.tools.validation.ValidationFilterAnnotation;
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import io.swagger.v3.oas.annotations.Hidden;
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import io.swagger.v3.oas.annotations.Parameter;
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import io.swagger.v3.oas.annotations.media.ArraySchema;
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import io.swagger.v3.oas.annotations.media.Content;
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@ -33,7 +32,6 @@ import org.opencdmp.data.ReferenceEntity;
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import org.opencdmp.model.builder.reference.ReferenceBuilder;
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import org.opencdmp.model.censorship.reference.ReferenceCensor;
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import org.opencdmp.model.persist.ReferencePersist;
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import org.opencdmp.model.planblueprint.PlanBlueprint;
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import org.opencdmp.model.reference.Reference;
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import org.opencdmp.model.result.QueryResult;
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import org.opencdmp.query.ReferenceQuery;
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@ -74,7 +72,6 @@ public class ReferenceController {
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private final MessageSource messageSource;
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@Autowired
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public ReferenceController(
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BuilderFactory builderFactory,
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@ -126,10 +123,27 @@ public class ReferenceController {
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return new QueryResult<>(models, count);
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}
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@PostMapping("search")
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@Hidden
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//TODO thgiannos add swagger docs
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@OperationWithTenantHeader(summary = "Query all references including results from external APIs", description = SwaggerHelpers.Reference.endpoint_search, requestBody = @io.swagger.v3.oas.annotations.parameters.RequestBody(description = SwaggerHelpers.Reference.endpoint_search_request_body, content = @Content(
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examples = {
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@ExampleObject(
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name = "Pagination and projection",
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description = "Simple paginated request using a property projection list and pagination info",
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value = SwaggerHelpers.Reference.endpoint_search_request_body_example
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)
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}
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)), responses = @ApiResponse(description = "OK", responseCode = "200", content = @Content(
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array = @ArraySchema(
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schema = @Schema(
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implementation = Reference.class
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)
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),
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examples = @ExampleObject(
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name = "First page",
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description = "Example with the first page of paginated results",
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value = SwaggerHelpers.Reference.endpoint_search_response_example
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))))
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@Swagger404
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public List<Reference> searchReferenceWithDefinition(@RequestBody ReferenceSearchLookup lookup) throws MyNotFoundException, InvalidApplicationException {
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logger.debug("search with db definition {}", Reference.class.getSimpleName());
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@ -12,7 +12,6 @@ import gr.cite.tools.fieldset.FieldSet;
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import gr.cite.tools.logging.LoggerService;
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import gr.cite.tools.logging.MapLogEntry;
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import gr.cite.tools.validation.ValidationFilterAnnotation;
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import io.swagger.v3.oas.annotations.Hidden;
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import io.swagger.v3.oas.annotations.Parameter;
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import io.swagger.v3.oas.annotations.media.ArraySchema;
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import io.swagger.v3.oas.annotations.media.Content;
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@ -37,9 +36,11 @@ import org.opencdmp.model.builder.PlanAssociatedUserBuilder;
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import org.opencdmp.model.builder.UserBuilder;
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import org.opencdmp.model.censorship.PlanAssociatedUserCensor;
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import org.opencdmp.model.censorship.UserCensor;
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import org.opencdmp.model.persist.*;
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import org.opencdmp.model.persist.UserMergeRequestPersist;
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import org.opencdmp.model.persist.UserPersist;
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import org.opencdmp.model.persist.UserRolePatchPersist;
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import org.opencdmp.model.persist.UserTenantUsersInviteRequest;
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import org.opencdmp.model.persist.actionconfirmation.RemoveCredentialRequestPersist;
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import org.opencdmp.model.plan.Plan;
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import org.opencdmp.model.result.QueryResult;
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import org.opencdmp.model.user.User;
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import org.opencdmp.query.UserQuery;
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@ -143,7 +144,25 @@ public class UserController {
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}
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@PostMapping("plan-associated/query")
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@Hidden
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@OperationWithTenantHeader(summary = "Query all plan associated users", description = SwaggerHelpers.User.endpoint_query_plan_associated, requestBody = @io.swagger.v3.oas.annotations.parameters.RequestBody(description = SwaggerHelpers.User.endpoint_query_request_body, content = @Content(
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examples = {
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@ExampleObject(
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name = "Pagination and projection",
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description = "Simple paginated request using a property projection list and pagination info",
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value = SwaggerHelpers.User.endpoint_query_plan_associated_request_body_example
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)
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}
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)), responses = @ApiResponse(description = "OK", responseCode = "200", content = @Content(
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array = @ArraySchema(
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schema = @Schema(
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implementation = PlanAssociatedUser.class
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)
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),
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examples = @ExampleObject(
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name = "First page",
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description = "Example with the first page of paginated results",
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value = SwaggerHelpers.User.endpoint_query_plan_associated_response_example
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))))
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public QueryResult<PlanAssociatedUser> queryPlanAssociated(@RequestBody UserLookup lookup) throws MyApplicationException, MyForbiddenException {
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logger.debug("querying {}", User.class.getSimpleName());
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@ -219,8 +238,11 @@ public class UserController {
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}
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@GetMapping("/export/csv/{hasTenantAdminMode}")
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@Hidden
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public ResponseEntity<byte[]> exportCsv(@PathVariable("hasTenantAdminMode") Boolean hasTenantAdminMode) throws MyApplicationException, MyForbiddenException, MyNotFoundException, IOException, InvalidApplicationException {
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@OperationWithTenantHeader(summary = "Export users in a .csv file", description = "",
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responses = @ApiResponse(description = "OK", responseCode = "200"))
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public ResponseEntity<byte[]> exportCsv(
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@Parameter(name = "hasTenantAdminMode", description = "Controls whether to fetch users as a tenant admin or not", example = "false", required = true) @PathVariable("hasTenantAdminMode") Boolean hasTenantAdminMode
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) throws MyApplicationException, MyForbiddenException, MyNotFoundException, IOException, InvalidApplicationException {
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logger.debug(new MapLogEntry("export" + User.class.getSimpleName()).And("hasTenantAdminMode", hasTenantAdminMode));
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// this.censorFactory.censor(UserCensor.class).censor(fieldSet, null);
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@ -3346,6 +3346,190 @@ public final class SwaggerHelpers {
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}
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""";
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public static final String endpoint_search =
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"""
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This endpoint is used to fetch all the available references.<br/>
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It also allows to restrict the results using a query object passed in the request body.<br/>
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""";
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public static final String endpoint_search_request_body =
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"""
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Let's explore the options this object gives us.
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### <u>General query parameters:</u>
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<ul>
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<li><b>page:</b>
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This is an object controlling the pagination of the results. It contains two properties.
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</li>
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<ul>
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<li><b>offset:</b>
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How many records to omit.
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</li>
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<li><b>size:</b>
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How many records to include in each page.
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</li>
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</ul>
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</ul>
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For example, if we want the third page, and our pages to contain 15 elements, we would pass the following object:
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```JSON
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{
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"offset": 30,
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"size": 15
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}
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```
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<ul>
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<li><b>order:</b>
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This is an object controlling the ordering of the results.
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It contains a list of strings called <i>items</i> with the names of the properties to use.
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<br/>If the name of the property is prefixed with a <b>'-'</b>, the ordering direction is <b>DESC</b>. Otherwise, it is <b>ASC</b>.
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</li>
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</ul>
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For example, if we wanted to order based on the field 'createdAt' in descending order, we would pass the following object:
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```JSON
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{
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"items": [
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"-createdAt"
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],
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}
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```
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<ul>
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<li><b>metadata:</b>
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This is an object containing metadata for the request. There is only one available option.
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<ul>
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<li><b>countAll:</b>
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If this is set to true, the count property included in the response will account for all the records regardless the pagination,
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with all the rest of filtering options applied of course.
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Otherwise, if it is set to false or not present, only the returned results will be counted.
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<br/>The first option is useful for the UI clients to calculate how many result pages are available.
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</li>
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</ul>
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</li>
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<li><b>project:</b>
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This is an object controlling the data projection of the results.
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It contains a list of strings called <i>fields</i> with the names of the properties to project.
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<br/>You can also include properties that are deeper in the object tree by prefixing them with dots.
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</li>
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</ul>
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### <u>Reference specific query parameters:</u>
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<ul>
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<li><b>like:</b>
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If there is a like parameter present in the query, only the reference entities that include the contents of the parameter either in their labels, descriptions or the references will be in the response.
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</li>
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<li><b>typeId:</b>
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This is the type id of the references we want in the response. <br/>If empty, every record is included.
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</li>
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<li><b>key:</b>
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This is the id of the external source (API) we want results from.
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<br/>If not present, no external reference is included.
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</li>
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<li><b>dependencyReferences:</b>
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This is a list and determines which records we want to include in the response, based on the references they depend on.
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<br/>If not present, every record is included.
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</li>
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</ul>
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""";
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public static final String endpoint_search_request_body_example =
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"""
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{
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"project":{
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"fields":[
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"id",
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"hash",
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"label",
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"type",
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"type.id",
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"description",
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"definition.fields.code",
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"definition.fields.dataType",
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"definition.fields.value",
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"reference",
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"abbreviation",
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"source",
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"sourceType"
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]
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},
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"page":{
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"size":100,
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"offset":0
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},
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"typeId":"5b9c284f-f041-4995-96cc-fad7ad13289c",
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"dependencyReferences":[
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\s
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],
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"order":{
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"items":[
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"label"
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]
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}
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}
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""";
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public static final String endpoint_search_response_example =
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"""
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[
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{
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"label": "A Randomized, Double-Blind, Placebo-Controlled, Multi-Center Study to Evaluate the Efficacy of ManNAc in Subjects with GNE Myopathy (nih_________::5U01AR070498-04)",
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"type": {
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"id": "5b9c284f-f041-4995-96cc-fad7ad13289c"
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},
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"description": "A Randomized, Double-Blind, Placebo-Controlled, Multi-Center Study to Evaluate the Efficacy of ManNAc in Subjects with GNE Myopathy",
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"definition": {
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"fields": [
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{
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"code": "referenceType",
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"dataType": 0,
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"value": "Grants"
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},
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{
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"code": "key",
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"dataType": 0,
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"value": "openaire"
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}
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]
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},
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"reference": "nih_________::5U01AR070498-04",
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"source": "openaire",
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"sourceType": 1,
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"hash": ""
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},
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{
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"label": "A genome scale census of virulence factors in the major mould pathogen of human lungs, Aspergillus fumigatus (ukri________::1640253)",
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"type": {
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"id": "5b9c284f-f041-4995-96cc-fad7ad13289c"
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},
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"description": "A genome scale census of virulence factors in the major mould pathogen of human lungs, Aspergillus fumigatus",
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"definition": {
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"fields": [
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{
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"code": "referenceType",
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"dataType": 0,
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"value": "Grants"
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},
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{
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"code": "key",
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"dataType": 0,
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"value": "openaire"
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}
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]
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},
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"reference": "ukri________::1640253",
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"source": "openaire",
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"sourceType": 1,
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"hash": ""
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}
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]
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""";
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}
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public static final class ReferenceType {
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@ -3779,6 +3963,12 @@ public final class SwaggerHelpers {
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It also allows to restrict the results using a query object passed in the request body.<br/>
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""";
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public static final String endpoint_query_plan_associated =
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"""
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This endpoint is used to fetch all the available users.<br/>
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It also allows to restrict the results using a query object passed in the request body.<br/>
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""";
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public static final String endpoint_query_request_body =
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"""
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Let's explore the options this object gives us.
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@ -3908,6 +4098,32 @@ public final class SwaggerHelpers {
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}
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""";
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public static final String endpoint_query_plan_associated_request_body_example =
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"""
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{
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"project":{
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"fields":[
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"id",
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"name",
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"email"
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]
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},
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"page":{
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"size":100,
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"offset":0
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},
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"isActive":[
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1
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],
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"order":{
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"items":[
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"name"
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]
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},
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"like":"user%"
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}
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""";
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public static final String endpoint_query_response_example =
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"""
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{
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@ -4241,6 +4457,25 @@ public final class SwaggerHelpers {
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}
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""";
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public static final String endpoint_query_plan_associated_response_example =
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"""
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{
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"items":[
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{
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"id":"d26916c6-8763-450e-9048-b06e1114d0b4",
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"name":"user3 user3",
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"email":"user3@dmp.gr"
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},
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{
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"id":"02832fb6-0b12-469f-a886-7685406959d4",
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"name":"user4",
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"email":"user4@dmp.gr"
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}
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],
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"count":2
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}
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""";
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}
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public static final class Principal {
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