Merge branch 'dmp-refactoring' of https://code-repo.d4science.org/MaDgiK-CITE/argos into dmp-refactoring

# Conflicts:
#	dmp-frontend/src/app/core/services/utilities/enum-utils.service.ts

dmp-backend/core/src/main/java/eu/eudat/authorization/Permission.java

@@ -22,7 +22,8 @@ public final class Permission {
 	public static String PublicBrowseReference = "PublicBrowseReference";
 	public static String PublicBrowseUser = "PublicBrowseUser";
 	
-	
+	//Elastic
+	public static String ManageElastic = "ManageElastic";
 	
 	//Language
 	public static String BrowseLanguage = "BrowseLanguage";

dmp-backend/core/src/main/java/eu/eudat/commons/types/dmp/DmpBlueprintValueEntity.java

@@ -0,0 +1,25 @@
+package eu.eudat.commons.types.dmp;
+
+public class DmpBlueprintValueEntity {
+
+    private String fieldId;
+
+    private String value;
+
+    public String getFieldId() {
+        return fieldId;
+    }
+
+    public void setFieldId(String fieldId) {
+        this.fieldId = fieldId;
+    }
+
+    public String getValue() {
+        return value;
+    }
+
+    public void setValue(String value) {
+        this.value = value;
+    }
+
+}

dmp-backend/core/src/main/java/eu/eudat/commons/types/dmp/DmpContactEntity.java

@@ -1,6 +1,6 @@
-package eu.eudat.model.persist.dmpproperties;
+package eu.eudat.commons.types.dmp;
 
-public class DmpContact {
+public class DmpContactEntity {
 
     String userId;
 

dmp-backend/core/src/main/java/eu/eudat/commons/types/dmp/DmpPropertiesEntity.java

@@ -0,0 +1,27 @@
+package eu.eudat.commons.types.dmp;
+
+import java.util.List;
+
+public class DmpPropertiesEntity {
+
+    private List<DmpBlueprintValueEntity> dmpBlueprintValues;
+
+    private List<DmpContactEntity> contacts;
+
+    public List<DmpBlueprintValueEntity> getDmpBlueprintValues() {
+        return dmpBlueprintValues;
+    }
+
+    public void setDmpBlueprintValues(List<DmpBlueprintValueEntity> dmpBlueprintValues) {
+        this.dmpBlueprintValues = dmpBlueprintValues;
+    }
+
+    public List<DmpContactEntity> getContacts() {
+        return contacts;
+    }
+
+    public void setContacts(List<DmpContactEntity> contacts) {
+        this.contacts = contacts;
+    }
+
+}

dmp-backend/core/src/main/java/eu/eudat/commons/types/referencetype/AuthenticationConfigurationEntity.java

@@ -5,6 +5,7 @@ import jakarta.xml.bind.annotation.XmlElement;
 
 public class AuthenticationConfigurationEntity {
 
+    private Boolean enabled;
     private String authUrl;
     private ReferenceTypeExternalApiHTTPMethodType authMethod;
     private String authTokenPath;
@@ -15,6 +16,15 @@ public class AuthenticationConfigurationEntity {
         return authUrl;
     }
 
+    public Boolean getEnabled() {
+        return enabled;
+    }
+
+    @XmlElement(name = "enabled")
+    public void setEnabled(Boolean enabled) {
+        this.enabled = enabled;
+    }
+
     @XmlElement(name = "authUrl")
     public void setAuthUrl(String authUrl) {
         this.authUrl = authUrl;

dmp-backend/core/src/main/java/eu/eudat/commons/types/referencetype/DependencyPropertyEntity.java

@@ -0,0 +1,44 @@
+package eu.eudat.commons.types.referencetype;
+
+import jakarta.xml.bind.annotation.XmlAccessType;
+import jakarta.xml.bind.annotation.XmlAccessorType;
+import jakarta.xml.bind.annotation.XmlAttribute;
+import jakarta.xml.bind.annotation.XmlRootElement;
+
+@XmlRootElement(name = "property")
+@XmlAccessorType(XmlAccessType.FIELD)
+public class DependencyPropertyEntity {
+
+    @XmlAttribute(name = "code")
+    private String code;
+
+    @XmlAttribute(name = "target")
+    private String target;
+
+    @XmlAttribute(name = "required")
+    private Boolean required;
+
+    public String getCode() {
+        return code;
+    }
+
+    public void setCode(String code) {
+        this.code = code;
+    }
+
+    public String getTarget() {
+        return target;
+    }
+
+    public void setTarget(String target) {
+        this.target = target;
+    }
+
+    public Boolean getRequired() {
+        return required;
+    }
+
+    public void setRequired(Boolean required) {
+        this.required = required;
+    }
+}

dmp-backend/core/src/main/java/eu/eudat/commons/types/referencetype/ReferenceTypeSourceBaseConfigurationEntity.java

@@ -2,6 +2,9 @@ package eu.eudat.commons.types.referencetype;
 
 import eu.eudat.commons.enums.ReferenceTypeSourceType;
 import jakarta.xml.bind.annotation.XmlElement;
+import jakarta.xml.bind.annotation.XmlElementWrapper;
+
+import java.util.List;
 
 public abstract class ReferenceTypeSourceBaseConfigurationEntity {
 
@@ -12,7 +15,7 @@ public abstract class ReferenceTypeSourceBaseConfigurationEntity {
     private Integer ordinal;
     private ReferenceTypeSourceType type;
 
-
+    private List<ReferenceTypeSourceBaseDependencyEntity> dependencies;
     public ReferenceTypeSourceType getType() {
         return type;
     }
@@ -48,4 +51,14 @@ public abstract class ReferenceTypeSourceBaseConfigurationEntity {
     public void setType(ReferenceTypeSourceType type) {
         this.type = type;
     }
+
+    public List<ReferenceTypeSourceBaseDependencyEntity> getDependencies() {
+        return dependencies;
+    }
+
+    @XmlElementWrapper
+    @XmlElement(name = "dependency")
+    public void setDependencies(List<ReferenceTypeSourceBaseDependencyEntity> dependencies) {
+        this.dependencies = dependencies;
+    }
 }

dmp-backend/core/src/main/java/eu/eudat/commons/types/referencetype/ReferenceTypeSourceBaseDependencyEntity.java

@@ -0,0 +1,55 @@
+package eu.eudat.commons.types.referencetype;
+
+import jakarta.xml.bind.annotation.*;
+
+import java.util.List;
+
+@XmlRootElement(name = "dependency")
+@XmlAccessorType(XmlAccessType.FIELD)
+public class ReferenceTypeSourceBaseDependencyEntity {
+    @XmlAttribute(name = "referenceTypeCode")
+    private String referenceTypeCode;
+
+    @XmlAttribute(name = "key")
+    private String key;
+
+    @XmlAttribute(name = "required")
+    private Boolean required;
+
+    @XmlElementWrapper(name = "properties")
+    @XmlElement(name = "property")
+    private List<DependencyPropertyEntity> properties;
+
+
+    public String getReferenceTypeCode() {
+        return referenceTypeCode;
+    }
+
+    public void setReferenceTypeCode(String referenceTypeCode) {
+        this.referenceTypeCode = referenceTypeCode;
+    }
+
+    public String getKey() {
+        return key;
+    }
+
+    public void setKey(String key) {
+        this.key = key;
+    }
+
+    public Boolean getRequired() {
+        return required;
+    }
+
+    public void setRequired(Boolean required) {
+        this.required = required;
+    }
+
+    public List<DependencyPropertyEntity> getProperties() {
+        return properties;
+    }
+
+    public void setProperties(List<DependencyPropertyEntity> properties) {
+        this.properties = properties;
+    }
+}

dmp-backend/core/src/main/java/eu/eudat/configurations/elastic/AppElasticProperties.java

@@ -7,6 +7,7 @@ public class AppElasticProperties {
 	private boolean enabled;
 	private String dmpIndexName;
 	private String descriptionIndexName;
+	private int resetBatchSize;
 	private boolean enableIcuAnalysisPlugin;
 
 	public String getDmpIndexName() {
@@ -40,4 +41,12 @@ public class AppElasticProperties {
 	public void setDescriptionIndexName(String descriptionIndexName) {
 		this.descriptionIndexName = descriptionIndexName;
 	}
+
+	public int getResetBatchSize() {
+		return resetBatchSize;
+	}
+
+	public void setResetBatchSize(int resetBatchSize) {
+		this.resetBatchSize = resetBatchSize;
+	}
 }

dmp-backend/core/src/main/java/eu/eudat/data/DmpDescriptionTemplateEntity.java

@@ -11,7 +11,7 @@ import java.util.UUID;
 
 @Entity
 @Table(name = "\"DmpDescriptionTemplate\"")
-public class DmpDescriptionTemplateEntity implements DataEntity<DmpDescriptionTemplateEntity, UUID> {
+public class DmpDescriptionTemplateEntity  {
 
     @Id
     @Column(name = "id", updatable = false, nullable = false, columnDefinition = "BINARY(16)")
@@ -105,19 +105,4 @@ public class DmpDescriptionTemplateEntity implements DataEntity<DmpDescriptionTe
     public void setIsActive(IsActive isActive) {
         this.isActive = isActive;
     }
-
-    @Override
-    public void update(DmpDescriptionTemplateEntity entity) {
-        
-    }
-
-    @Override
-    public UUID getKeys() {
-        return null;
-    }
-
-    @Override
-    public DmpDescriptionTemplateEntity buildFromTuple(List<Tuple> tuple, List<String> fields, String base) {
-        return null;
-    }
 }

dmp-backend/core/src/main/java/eu/eudat/data/DmpUserEntity.java

@@ -13,7 +13,7 @@ import java.util.UUID;
 
 @Entity
 @Table(name = "\"DmpUser\"")
-public class DmpUserEntity implements DataEntity {
+public class DmpUserEntity {
 
     @Id
     @Column(name = "id", updatable = false, nullable = false, columnDefinition = "BINARY(16)")
@@ -108,19 +108,4 @@ public class DmpUserEntity implements DataEntity {
     public void setIsActive(IsActive isActive) {
         this.isActive = isActive;
     }
-
-    @Override
-    public void update(Object entity) {
-        
-    }
-
-    @Override
-    public Object getKeys() {
-        return null;
-    }
-
-    @Override
-    public Object buildFromTuple(List tuple, List fields, String base) {
-        return null;
-    }
 }

dmp-backend/core/src/main/java/eu/eudat/data/UserCredentialEntity.java

@@ -11,7 +11,7 @@ import java.util.UUID;
 
 @Entity
 @Table(name = "\"UserCredential\"")
-public class UserCredentialEntity implements DataEntity<UserCredentialEntity, UUID> {
+public class UserCredentialEntity {
 
 	@Id
 	@Column(name = "id", columnDefinition = "uuid", updatable = false, nullable = false)
@@ -63,22 +63,4 @@ public class UserCredentialEntity implements DataEntity<UserCredentialEntity, UU
 	public void setCreatedAt(Instant createdAt) {
 		this.createdAt = createdAt;
 	}
-
-
-	@Override
-	public void update(UserCredentialEntity entity) {
-		this.externalId = entity.getExternalId();
-	}
-
-	@Override
-	public UUID getKeys() {
-		return this.id;
-	}
-
-	@Override
-	public UserCredentialEntity buildFromTuple(List<Tuple> tuple, List<String> fields, String base) {
-		String currentBase = base.isEmpty() ? "" : base + ".";
-		if (fields.contains(currentBase + "id")) this.id = EntityBinder.fromTuple(tuple, currentBase + "id");
-		return this;
-	}
 }

dmp-backend/core/src/main/java/eu/eudat/data/UserDescriptionTemplateEntity.java

@@ -14,7 +14,7 @@ import java.util.UUID;
 
 @Entity
 @Table(name = "\"UserDescriptionTemplate\"")
-public class UserDescriptionTemplateEntity implements DataEntity<UserDescriptionTemplateEntity, UUID> {
+public class UserDescriptionTemplateEntity {
     @Id
     @Column(name = "id", columnDefinition = "uuid", updatable = false, nullable = false)
     private UUID id;
@@ -102,21 +102,4 @@ public class UserDescriptionTemplateEntity implements DataEntity<UserDescription
     public void setRole(UserDescriptionTemplateRole role) {
         this.role = role;
     }
-
-    @Override
-    public void update(UserDescriptionTemplateEntity entity) {
-        this.role = entity.getRole();
-    }
-
-    @Override
-    public UUID getKeys() {
-        return this.id;
-    }
-
-    @Override
-    public UserDescriptionTemplateEntity buildFromTuple(List<Tuple> tuple, List<String> fields, String base) {
-        String currentBase = base.isEmpty() ? "" : base + ".";
-        if (fields.contains(currentBase + "id")) this.id = EntityBinder.fromTuple(tuple, currentBase + "id");
-        return this;
-    }
 }

dmp-backend/core/src/main/java/eu/eudat/data/UserEntity.java

@@ -13,7 +13,7 @@ import java.util.*;
 
 @Entity
 @Table(name = "\"User\"")
-public class UserEntity implements DataEntity<UserEntity, UUID> {
+public class UserEntity {
 
 	@Id
 	@Column(name = "id", columnDefinition = "uuid", updatable = false, nullable = false)
@@ -92,25 +92,4 @@ public class UserEntity implements DataEntity<UserEntity, UUID> {
 	public void setUpdatedAt(Instant updatedAt) {
 		this.updatedAt = updatedAt;
 	}
-	
-	
-	
-
-	@Override
-	public void update(UserEntity entity) {
-		this.name = entity.getName();
-		this.additionalInfo = entity.getAdditionalInfo();
-	}
-
-	@Override
-	public UUID getKeys() {
-		return this.id;
-	}
-
-	@Override
-	public UserEntity buildFromTuple(List<Tuple> tuple, List<String> fields, String base) {
-		String currentBase = base.isEmpty() ? "" : base + ".";
-		if (fields.contains(currentBase + "id")) this.id = EntityBinder.fromTuple(tuple, currentBase + "id");
-		return this;
-	}
 }

dmp-backend/core/src/main/java/eu/eudat/data/UserRoleEntity.java

@@ -12,7 +12,7 @@ import java.util.UUID;
 
 @Entity
 @Table(name = "\"UserRole\"")
-public class UserRoleEntity implements DataEntity<UserRoleEntity, UUID> {
+public class UserRoleEntity {
 	@Id
 	@Column(name = "id", columnDefinition = "uuid", updatable = false, nullable = false)
 	private UUID id;
@@ -65,20 +65,4 @@ public class UserRoleEntity implements DataEntity<UserRoleEntity, UUID> {
 		this.createdAt = createdAt;
 	}
 
-	@Override
-	public void update(UserRoleEntity entity) {
-
-	}
-
-	@Override
-	public UUID getKeys() {
-		return this.id;
-	}
-
-	@Override
-	public UserRoleEntity buildFromTuple(List<Tuple> tuple, List<String> fields, String base) {
-		String currentBase = base.isEmpty() ? "" : base + ".";
-		if (fields.contains(currentBase + "id")) this.id = EntityBinder.fromTuple(tuple, currentBase + "id");
-		return this;
-	}
 }

dmp-backend/core/src/main/java/eu/eudat/data/old/FileUpload.java

@@ -122,7 +122,7 @@ public class FileUpload implements DataEntity<FileUpload, UUID> {
     public FileUpload buildFromTuple(List<Tuple> tuple, List<String> fields, String base) {
         String currentBase = base.isEmpty() ? "" : base + ".";
         if (fields.contains(currentBase + "id")) this.id = EntityBinder.fromTuple(tuple, currentBase + "id");
-        this.creator = tuple.stream().map(x -> new UserEntity().buildFromTuple(tuple, fields , base.isEmpty() ? "creator" : base + "." + "creator")).collect(Collectors.toList()).get(0);
+//        this.creator = tuple.stream().map(x -> new UserEntity().buildFromTuple(tuple, fields , base.isEmpty() ? "creator" : base + "." + "creator")).collect(Collectors.toList()).get(0);
         return this;
     }
 }

dmp-backend/core/src/main/java/eu/eudat/data/old/Grant.java

@@ -292,8 +292,8 @@ public class Grant implements DataEntity<Grant, UUID> {
 		if (fields.contains(currentBase + "id")) this.id = EntityBinder.fromTuple(tuple, currentBase + "id");
 //		if (fields.contains(currentBase + "dmps"))
 //			this.dmps = tuple.stream().map(x -> new DMP().buildFromTuple(Arrays.asList(x), fields, currentBase + "dmps")).collect(Collectors.toSet());
-		if (fields.contains(currentBase + "creationUser"))
+//		if (fields.contains(currentBase + "creationUser"))
-			this.creationUser = tuple.stream().map(x -> new UserEntity().buildFromTuple(Arrays.asList(x), fields, currentBase + "creationUser")).collect(Collectors.toList()).get(0);
+//			this.creationUser = tuple.stream().map(x -> new UserEntity().buildFromTuple(Arrays.asList(x), fields, currentBase + "creationUser")).collect(Collectors.toList()).get(0);
 		return this;
 	}
 }

dmp-backend/core/src/main/java/eu/eudat/data/old/Project.java

@@ -282,8 +282,8 @@ public class Project implements DataEntity<Project, UUID> {
 		if (fields.contains(currentBase + "id")) this.id = EntityBinder.fromTuple(tuple, currentBase + "id");
 //		if (fields.contains(currentBase + "dmps"))
 //			this.dmps = tuple.stream().map(x -> new DMP().buildFromTuple(Arrays.asList(x), fields, currentBase + "dmps")).collect(Collectors.toSet());
-		if (fields.contains(currentBase + "creationUser"))
+//		if (fields.contains(currentBase + "creationUser"))
-			this.creationUser = tuple.stream().map(x -> new UserEntity().buildFromTuple(Arrays.asList(x), fields, currentBase + "creationUser")).collect(Collectors.toList()).get(0);
+//			this.creationUser = tuple.stream().map(x -> new UserEntity().buildFromTuple(Arrays.asList(x), fields, currentBase + "creationUser")).collect(Collectors.toList()).get(0);
 		return this;
 	}
 }

dmp-backend/core/src/main/java/eu/eudat/elastic/data/nested/NestedDescriptionTemplateElasticEntity.java

@@ -22,7 +22,6 @@ public class NestedDescriptionTemplateElasticEntity {
 	public final static String _label = "label";
 
 	
-
 	@Field(value = NestedDescriptionTemplateElasticEntity._versionStatus, type = FieldType.Short)
 	private DescriptionTemplateVersionStatus versionStatus;
 	public final static String _versionStatus = "versionStatus";

dmp-backend/core/src/main/java/eu/eudat/model/builder/referencetypedefinition/AuthenticationConfigurationBuilder.java

@@ -49,6 +49,7 @@ public class AuthenticationConfigurationBuilder extends BaseBuilder<Authenticati
         List<AuthenticationConfiguration> models = new ArrayList<>();
         for (AuthenticationConfigurationEntity d : data) {
             AuthenticationConfiguration m = new AuthenticationConfiguration();
+            if (fields.hasField(this.asIndexer(AuthenticationConfiguration._enabled))) m.setEnabled(d.getEnabled());
             if (fields.hasField(this.asIndexer(AuthenticationConfiguration._authUrl))) m.setAuthUrl(d.getAuthUrl());
             if (fields.hasField(this.asIndexer(AuthenticationConfiguration._authMethod))) m.setAuthMethod(d.getAuthMethod());
             if (fields.hasField(this.asIndexer(AuthenticationConfiguration._authTokenPath))) m.setAuthTokenPath(d.getAuthTokenPath());

dmp-backend/core/src/main/java/eu/eudat/model/builder/referencetypedefinition/DependencyPropertyBuilder.java

@@ -0,0 +1,59 @@
+package eu.eudat.model.builder.referencetypedefinition;
+
+import eu.eudat.authorization.AuthorizationFlags;
+import eu.eudat.commons.types.referencetype.DependencyPropertyEntity;
+import eu.eudat.convention.ConventionService;
+import eu.eudat.model.builder.BaseBuilder;
+import eu.eudat.model.referencetypedefinition.DependencyProperty;
+import gr.cite.tools.data.builder.BuilderFactory;
+import gr.cite.tools.exception.MyApplicationException;
+import gr.cite.tools.fieldset.FieldSet;
+import gr.cite.tools.logging.DataLogEntry;
+import gr.cite.tools.logging.LoggerService;
+import org.slf4j.LoggerFactory;
+import org.springframework.beans.factory.annotation.Autowired;
+import org.springframework.beans.factory.config.ConfigurableBeanFactory;
+import org.springframework.context.annotation.Scope;
+import org.springframework.stereotype.Component;
+
+import java.util.*;
+
+@Component
+@Scope(value = ConfigurableBeanFactory.SCOPE_PROTOTYPE)
+public class DependencyPropertyBuilder extends BaseBuilder<DependencyProperty, DependencyPropertyEntity> {
+
+    private final BuilderFactory builderFactory;
+    private EnumSet<AuthorizationFlags> authorize = EnumSet.of(AuthorizationFlags.None);
+
+    @Autowired
+    public DependencyPropertyBuilder(
+            ConventionService conventionService, BuilderFactory builderFactory) {
+        super(conventionService, new LoggerService(LoggerFactory.getLogger(DependencyPropertyBuilder.class)));
+        this.builderFactory = builderFactory;
+    }
+
+    public DependencyPropertyBuilder authorize(EnumSet<AuthorizationFlags> values) {
+        this.authorize = values;
+        return this;
+    }
+
+    @Override
+    public List<DependencyProperty> build(FieldSet fields, List<DependencyPropertyEntity> data) throws MyApplicationException {
+        this.logger.debug("building for {} items requesting {} fields", Optional.ofNullable(data).map(List::size).orElse(0), Optional.ofNullable(fields).map(FieldSet::getFields).map(Set::size).orElse(0));
+        this.logger.trace(new DataLogEntry("requested fields", fields));
+        if (fields == null || data == null || fields.isEmpty())
+            return new ArrayList<>();
+
+        List<DependencyProperty> models = new ArrayList<>();
+        for (DependencyPropertyEntity d : data) {
+            DependencyProperty m = new DependencyProperty();
+            if (fields.hasField(this.asIndexer(DependencyProperty._code))) m.setCode(d.getCode());
+            if (fields.hasField(this.asIndexer(DependencyProperty._target))) m.setTarget(d.getTarget());
+            if (fields.hasField(this.asIndexer(DependencyProperty._required))) m.setRequired(d.getRequired());
+
+            models.add(m);
+        }
+        this.logger.debug("build {} items", Optional.of(models).map(List::size).orElse(0));
+        return models;
+    }
+}

dmp-backend/core/src/main/java/eu/eudat/model/builder/referencetypedefinition/ReferenceTypeSourceBaseConfigurationBuilder.java

@@ -5,6 +5,7 @@ import eu.eudat.commons.types.referencetype.ReferenceTypeSourceBaseConfiguration
 import eu.eudat.convention.ConventionService;
 import eu.eudat.model.builder.BaseBuilder;
 import eu.eudat.model.referencetypedefinition.ReferenceTypeSourceBaseConfiguration;
+import gr.cite.tools.data.builder.BuilderFactory;
 import gr.cite.tools.exception.MyApplicationException;
 import gr.cite.tools.fieldset.FieldSet;
 import gr.cite.tools.logging.DataLogEntry;
@@ -21,12 +22,14 @@ import java.util.*;
 public abstract class ReferenceTypeSourceBaseConfigurationBuilder<Model extends ReferenceTypeSourceBaseConfiguration, Entity extends ReferenceTypeSourceBaseConfigurationEntity> extends BaseBuilder<Model, Entity> {
 
     protected EnumSet<AuthorizationFlags> authorize = EnumSet.of(AuthorizationFlags.None);
+    protected final BuilderFactory builderFactory;
 
     @Autowired
     public ReferenceTypeSourceBaseConfigurationBuilder(
             ConventionService conventionService,
-            LoggerService logger) {
+            LoggerService logger, BuilderFactory builderFactory) {
         super(conventionService, logger);
+        this.builderFactory = builderFactory;
     }
 
     public ReferenceTypeSourceBaseConfigurationBuilder authorize(EnumSet<AuthorizationFlags> values) {
@@ -44,6 +47,7 @@ public abstract class ReferenceTypeSourceBaseConfigurationBuilder<Model extends
         if (fields == null || data == null || fields.isEmpty())
             return new ArrayList<>();
 
+        FieldSet dependenciesFields = fields.extractPrefixed(this.asPrefix(Model._dependencies));
         List<Model> models = new ArrayList<>();
         for (Entity d : data) {
             Model m = this.getInstance();
@@ -51,6 +55,8 @@ public abstract class ReferenceTypeSourceBaseConfigurationBuilder<Model extends
             if (fields.hasField(this.asIndexer(Model._label))) m.setLabel(d.getLabel());
             if (fields.hasField(this.asIndexer(Model._ordinal))) m.setOrdinal(d.getOrdinal());
             if (fields.hasField(this.asIndexer(Model._type))) m.setType(d.getType());
+            if (!dependenciesFields.isEmpty() && d.getDependencies() != null) m.setDependencies(this.builderFactory.builder(ReferenceTypeSourceBaseDependencyBuilder.class).authorize(this.authorize).build(dependenciesFields, d.getDependencies()));
+
             this.buildChild(fields, d, m);
             models.add(m);
         }

dmp-backend/core/src/main/java/eu/eudat/model/builder/referencetypedefinition/ReferenceTypeSourceBaseDependencyBuilder.java

@@ -0,0 +1,62 @@
+package eu.eudat.model.builder.referencetypedefinition;
+
+import eu.eudat.authorization.AuthorizationFlags;
+import eu.eudat.commons.types.referencetype.ReferenceTypeSourceBaseDependencyEntity;
+import eu.eudat.convention.ConventionService;
+import eu.eudat.model.builder.BaseBuilder;
+import eu.eudat.model.referencetypedefinition.ReferenceTypeSourceBaseDependency;
+import gr.cite.tools.data.builder.BuilderFactory;
+import gr.cite.tools.exception.MyApplicationException;
+import gr.cite.tools.fieldset.FieldSet;
+import gr.cite.tools.logging.DataLogEntry;
+import gr.cite.tools.logging.LoggerService;
+import org.slf4j.LoggerFactory;
+import org.springframework.beans.factory.annotation.Autowired;
+import org.springframework.beans.factory.config.ConfigurableBeanFactory;
+import org.springframework.context.annotation.Scope;
+import org.springframework.stereotype.Component;
+
+import java.util.*;
+
+@Component
+@Scope(value = ConfigurableBeanFactory.SCOPE_PROTOTYPE)
+public class ReferenceTypeSourceBaseDependencyBuilder extends BaseBuilder<ReferenceTypeSourceBaseDependency, ReferenceTypeSourceBaseDependencyEntity> {
+
+    private final BuilderFactory builderFactory;
+    private EnumSet<AuthorizationFlags> authorize = EnumSet.of(AuthorizationFlags.None);
+
+    @Autowired
+    public ReferenceTypeSourceBaseDependencyBuilder(
+            ConventionService conventionService, BuilderFactory builderFactory) {
+        super(conventionService, new LoggerService(LoggerFactory.getLogger(ReferenceTypeSourceBaseDependencyBuilder.class)));
+        this.builderFactory = builderFactory;
+    }
+
+    public ReferenceTypeSourceBaseDependencyBuilder authorize(EnumSet<AuthorizationFlags> values) {
+        this.authorize = values;
+        return this;
+    }
+
+    @Override
+    public List<ReferenceTypeSourceBaseDependency> build(FieldSet fields, List<ReferenceTypeSourceBaseDependencyEntity> data) throws MyApplicationException {
+        this.logger.debug("building for {} items requesting {} fields", Optional.ofNullable(data).map(List::size).orElse(0), Optional.ofNullable(fields).map(FieldSet::getFields).map(Set::size).orElse(0));
+        this.logger.trace(new DataLogEntry("requested fields", fields));
+        if (fields == null || data == null || fields.isEmpty())
+            return new ArrayList<>();
+
+        FieldSet propertiesFields = fields.extractPrefixed(this.asPrefix(ReferenceTypeSourceBaseDependency._properties));
+
+        List<ReferenceTypeSourceBaseDependency> models = new ArrayList<>();
+        for (ReferenceTypeSourceBaseDependencyEntity d : data) {
+            ReferenceTypeSourceBaseDependency m = new ReferenceTypeSourceBaseDependency();
+            if (fields.hasField(this.asIndexer(ReferenceTypeSourceBaseDependency._referenceTypeCode))) m.setReferenceTypeCode(d.getReferenceTypeCode());
+            if (fields.hasField(this.asIndexer(ReferenceTypeSourceBaseDependency._key))) m.setKey(d.getKey());
+            if (fields.hasField(this.asIndexer(ReferenceTypeSourceBaseDependency._required))) m.setRequired(d.getRequired());
+            if (!propertiesFields.isEmpty() && d.getProperties() != null) m.setProperties(this.builderFactory.builder(DependencyPropertyBuilder.class).authorize(this.authorize).build(propertiesFields, d.getProperties()));
+
+            models.add(m);
+        }
+        this.logger.debug("build {} items", Optional.of(models).map(List::size).orElse(0));
+        return models;
+    }
+}

dmp-backend/core/src/main/java/eu/eudat/model/builder/referencetypedefinition/ReferenceTypeSourceExternalApiConfigurationBuilder.java

@@ -25,7 +25,7 @@ public class ReferenceTypeSourceExternalApiConfigurationBuilder extends Referenc
     @Autowired
     public ReferenceTypeSourceExternalApiConfigurationBuilder(
             ConventionService conventionService, BuilderFactory builderFactory) {
-        super(conventionService, new LoggerService(LoggerFactory.getLogger(ReferenceTypeSourceExternalApiConfigurationBuilder.class)));
+        super(conventionService, new LoggerService(LoggerFactory.getLogger(ReferenceTypeSourceExternalApiConfigurationBuilder.class)), builderFactory);
         this.builderFactory = builderFactory;
     }
 

dmp-backend/core/src/main/java/eu/eudat/model/builder/referencetypedefinition/ReferenceTypeSourceStaticOptionConfigurationBuilder.java

@@ -25,7 +25,7 @@ public class ReferenceTypeSourceStaticOptionConfigurationBuilder extends Referen
     @Autowired
     public ReferenceTypeSourceStaticOptionConfigurationBuilder(
             ConventionService conventionService, BuilderFactory builderFactory) {
-        super(conventionService, new LoggerService(LoggerFactory.getLogger(ReferenceTypeSourceStaticOptionConfigurationBuilder.class)));
+        super(conventionService, new LoggerService(LoggerFactory.getLogger(ReferenceTypeSourceStaticOptionConfigurationBuilder.class)), builderFactory);
         this.builderFactory = builderFactory;
     }
 

dmp-backend/core/src/main/java/eu/eudat/model/censorship/ReferenceTypeCensor.java

@@ -3,7 +3,7 @@ package eu.eudat.model.censorship;
 import eu.eudat.authorization.Permission;
 import eu.eudat.convention.ConventionService;
 import eu.eudat.model.ReferenceType;
-import eu.eudat.model.censorship.referencetype.ReferenceTypeDefinitionCensor;
+import eu.eudat.model.censorship.referencetypedefinition.ReferenceTypeDefinitionCensor;
 import gr.cite.commons.web.authz.service.AuthorizationService;
 import gr.cite.tools.data.censor.CensorFactory;
 import gr.cite.tools.fieldset.FieldSet;

dmp-backend/core/src/main/java/eu/eudat/model/censorship/referencetypedefinition/DependencyPropertyCensor.java

@@ -1,4 +1,4 @@
-package eu.eudat.model.censorship.referencetype;
+package eu.eudat.model.censorship.referencetypedefinition;
 
 import eu.eudat.authorization.Permission;
 import eu.eudat.convention.ConventionService;
@@ -16,13 +16,13 @@ import java.util.UUID;
 
 @Component
 @Scope(value = ConfigurableBeanFactory.SCOPE_PROTOTYPE)
-public class ReferenceTypeSourceBaseConfigurationCensor extends BaseCensor {
+public class DependencyPropertyCensor extends BaseCensor {
 
-    private static final LoggerService logger = new LoggerService(LoggerFactory.getLogger(ReferenceTypeSourceBaseConfigurationCensor.class));
+    private static final LoggerService logger = new LoggerService(LoggerFactory.getLogger(DependencyPropertyCensor.class));
 
     protected final AuthorizationService authService;
 
-    public ReferenceTypeSourceBaseConfigurationCensor(ConventionService conventionService,
+    public DependencyPropertyCensor(ConventionService conventionService,
                                     AuthorizationService authService) {
         super(conventionService);
         this.authService = authService;

dmp-backend/core/src/main/java/eu/eudat/model/censorship/referencetypedefinition/ReferenceTypeDefinitionCensor.java

@@ -1,4 +1,4 @@
-package eu.eudat.model.censorship.referencetype;
+package eu.eudat.model.censorship.referencetypedefinition;
 
 import eu.eudat.authorization.Permission;
 import eu.eudat.convention.ConventionService;

dmp-backend/core/src/main/java/eu/eudat/model/censorship/referencetypedefinition/ReferenceTypeFieldCensor.java

@@ -1,4 +1,4 @@
-package eu.eudat.model.censorship.referencetype;
+package eu.eudat.model.censorship.referencetypedefinition;
 
 import eu.eudat.authorization.Permission;
 import eu.eudat.convention.ConventionService;

dmp-backend/core/src/main/java/eu/eudat/model/censorship/referencetypedefinition/ReferenceTypeSourceBaseConfigurationCensor.java

@@ -0,0 +1,45 @@
+package eu.eudat.model.censorship.referencetypedefinition;
+
+import eu.eudat.authorization.Permission;
+import eu.eudat.convention.ConventionService;
+import eu.eudat.model.censorship.BaseCensor;
+import eu.eudat.model.referencetypedefinition.ReferenceTypeSourceBaseConfiguration;
+import gr.cite.commons.web.authz.service.AuthorizationService;
+import gr.cite.tools.data.censor.CensorFactory;
+import gr.cite.tools.fieldset.FieldSet;
+import gr.cite.tools.logging.DataLogEntry;
+import gr.cite.tools.logging.LoggerService;
+import org.slf4j.LoggerFactory;
+import org.springframework.beans.factory.config.ConfigurableBeanFactory;
+import org.springframework.context.annotation.Scope;
+import org.springframework.stereotype.Component;
+
+import java.util.UUID;
+
+@Component
+@Scope(value = ConfigurableBeanFactory.SCOPE_PROTOTYPE)
+public class ReferenceTypeSourceBaseConfigurationCensor extends BaseCensor {
+
+    private static final LoggerService logger = new LoggerService(LoggerFactory.getLogger(ReferenceTypeSourceBaseConfigurationCensor.class));
+
+    protected final AuthorizationService authService;
+    protected final CensorFactory censorFactory;
+
+    public ReferenceTypeSourceBaseConfigurationCensor(ConventionService conventionService,
+                                                      AuthorizationService authService, CensorFactory censorFactory) {
+        super(conventionService);
+        this.authService = authService;
+        this.censorFactory = censorFactory;
+    }
+
+    public void censor(FieldSet fields, UUID userId) {
+        logger.debug(new DataLogEntry("censoring fields", fields));
+        if (fields == null || fields.isEmpty())
+            return;
+
+        this.authService.authorizeForce(Permission.BrowseReferenceType);
+        FieldSet dependenciesFields = fields.extractPrefixed(this.asIndexerPrefix(ReferenceTypeSourceBaseConfiguration._dependencies));
+        this.censorFactory.censor(ReferenceTypeSourceBaseDependencyCensor.class).censor(dependenciesFields, userId);
+    }
+
+}

dmp-backend/core/src/main/java/eu/eudat/model/censorship/referencetypedefinition/ReferenceTypeSourceBaseDependencyCensor.java

@@ -0,0 +1,45 @@
+package eu.eudat.model.censorship.referencetypedefinition;
+
+import eu.eudat.authorization.Permission;
+import eu.eudat.convention.ConventionService;
+import eu.eudat.model.censorship.BaseCensor;
+import eu.eudat.model.referencetypedefinition.ReferenceTypeSourceBaseDependency;
+import gr.cite.commons.web.authz.service.AuthorizationService;
+import gr.cite.tools.data.censor.CensorFactory;
+import gr.cite.tools.fieldset.FieldSet;
+import gr.cite.tools.logging.DataLogEntry;
+import gr.cite.tools.logging.LoggerService;
+import org.slf4j.LoggerFactory;
+import org.springframework.beans.factory.config.ConfigurableBeanFactory;
+import org.springframework.context.annotation.Scope;
+import org.springframework.stereotype.Component;
+
+import java.util.UUID;
+
+@Component
+@Scope(value = ConfigurableBeanFactory.SCOPE_PROTOTYPE)
+public class ReferenceTypeSourceBaseDependencyCensor extends BaseCensor {
+
+    private static final LoggerService logger = new LoggerService(LoggerFactory.getLogger(ReferenceTypeSourceBaseDependencyCensor.class));
+
+    protected final AuthorizationService authService;
+    protected final CensorFactory censorFactory;
+
+    public ReferenceTypeSourceBaseDependencyCensor(ConventionService conventionService,
+                                                   AuthorizationService authService, CensorFactory censorFactory) {
+        super(conventionService);
+        this.authService = authService;
+        this.censorFactory = censorFactory;
+    }
+
+    public void censor(FieldSet fields, UUID userId) {
+        logger.debug(new DataLogEntry("censoring fields", fields));
+        if (fields == null || fields.isEmpty())
+            return;
+
+        this.authService.authorizeForce(Permission.BrowseReferenceType);
+        FieldSet propertiesFields = fields.extractPrefixed(this.asIndexerPrefix( ReferenceTypeSourceBaseDependency._properties));
+        this.censorFactory.censor(DependencyPropertyCensor.class).censor(propertiesFields, userId);
+    }
+
+}

dmp-backend/core/src/main/java/eu/eudat/model/persist/dmpproperties/DmpBlueprintValue.java

@@ -1,25 +0,0 @@
-package eu.eudat.model.persist.dmpproperties;
-
-public class DmpBlueprintValue {
-
-    private String fieldId;
-
-    private String fieldValue;
-
-    public String getFieldId() {
-        return fieldId;
-    }
-
-    public void setFieldId(String fieldId) {
-        this.fieldId = fieldId;
-    }
-
-    public String getFieldValue() {
-        return fieldValue;
-    }
-
-    public void setFieldValue(String fieldValue) {
-        this.fieldValue = fieldValue;
-    }
-
-}

dmp-backend/core/src/main/java/eu/eudat/model/persist/referencetypedefinition/AuthenticationConfigurationPersist.java

@@ -6,6 +6,8 @@ import jakarta.validation.constraints.NotNull;
 
 public class AuthenticationConfigurationPersist {
 
+    @NotNull(message = "{validation.empty}")
+    private Boolean enabled;
     @NotNull(message = "{validation.empty}")
     private String authUrl;
 
@@ -19,6 +21,14 @@ public class AuthenticationConfigurationPersist {
     @NotNull(message = "{validation.empty}")
     private String type;
 
+    public Boolean getEnabled() {
+        return enabled;
+    }
+
+    public void setEnabled(Boolean enabled) {
+        this.enabled = enabled;
+    }
+
     public String getAuthUrl() {
         return authUrl;
     }

dmp-backend/core/src/main/java/eu/eudat/model/persist/referencetypedefinition/DependencyPropertyPersist.java

@@ -0,0 +1,43 @@
+package eu.eudat.model.persist.referencetypedefinition;
+
+
+import jakarta.validation.constraints.NotEmpty;
+import jakarta.validation.constraints.NotNull;
+
+public class DependencyPropertyPersist {
+
+    @NotNull(message = "{validation.empty}")
+    @NotEmpty(message = "{validation.empty}")
+    private String code;
+
+    @NotNull(message = "{validation.empty}")
+    @NotEmpty(message = "{validation.empty}")
+    private String target;
+
+    @NotNull(message = "{validation.empty}")
+    private Boolean required;
+
+    public String getCode() {
+        return code;
+    }
+
+    public void setCode(String code) {
+        this.code = code;
+    }
+
+    public String getTarget() {
+        return target;
+    }
+
+    public void setTarget(String target) {
+        this.target = target;
+    }
+
+    public Boolean getRequired() {
+        return required;
+    }
+
+    public void setRequired(Boolean required) {
+        this.required = required;
+    }
+}

dmp-backend/core/src/main/java/eu/eudat/model/persist/referencetypedefinition/ReferenceTypeSourceBaseConfigurationPersist.java

@@ -4,9 +4,12 @@ import com.fasterxml.jackson.annotation.JsonSubTypes;
 import com.fasterxml.jackson.annotation.JsonTypeInfo;
 import eu.eudat.commons.enums.ReferenceTypeSourceType;
 import eu.eudat.commons.validation.ValidEnum;
+import jakarta.validation.Valid;
 import jakarta.validation.constraints.NotEmpty;
 import jakarta.validation.constraints.NotNull;
 
+import java.util.List;
+
 @JsonTypeInfo(
         use = JsonTypeInfo.Id.NAME,
         include = JsonTypeInfo.As.PROPERTY,
@@ -32,6 +35,8 @@ public abstract class ReferenceTypeSourceBaseConfigurationPersist {
     @ValidEnum(message = "{validation.empty}")
     private ReferenceTypeSourceType type;
 
+    @Valid
+    private List<ReferenceTypeSourceBaseDependencyPersist> dependencies;
 
     public String getKey() {
         return key;
@@ -64,4 +69,12 @@ public abstract class ReferenceTypeSourceBaseConfigurationPersist {
     public void setType(ReferenceTypeSourceType type) {
         this.type = type;
     }
+
+    public List<ReferenceTypeSourceBaseDependencyPersist> getDependencies() {
+        return dependencies;
+    }
+
+    public void setDependencies(List<ReferenceTypeSourceBaseDependencyPersist> dependencies) {
+        this.dependencies = dependencies;
+    }
 }

dmp-backend/core/src/main/java/eu/eudat/model/persist/referencetypedefinition/ReferenceTypeSourceBaseDependencyPersist.java

@@ -0,0 +1,58 @@
+package eu.eudat.model.persist.referencetypedefinition;
+
+import jakarta.validation.Valid;
+import jakarta.validation.constraints.NotEmpty;
+import jakarta.validation.constraints.NotNull;
+
+import java.util.List;
+
+public class ReferenceTypeSourceBaseDependencyPersist {
+
+    @NotNull(message = "{validation.empty}")
+    @NotEmpty(message = "{validation.empty}")
+    private String referenceTypeCode;
+
+    @NotNull(message = "{validation.empty}")
+    @NotEmpty(message = "{validation.empty}")
+    private String key;
+
+    @NotNull(message = "{validation.empty}")
+    private Boolean required;
+
+    @NotNull(message = "{validation.empty}")
+    @Valid
+    private List<DependencyPropertyPersist> properties;
+
+
+    public String getReferenceTypeCode() {
+        return referenceTypeCode;
+    }
+
+    public void setReferenceTypeCode(String referenceTypeCode) {
+        this.referenceTypeCode = referenceTypeCode;
+    }
+
+    public String getKey() {
+        return key;
+    }
+
+    public void setKey(String key) {
+        this.key = key;
+    }
+
+    public Boolean getRequired() {
+        return required;
+    }
+
+    public void setRequired(Boolean required) {
+        this.required = required;
+    }
+
+    public List<DependencyPropertyPersist> getProperties() {
+        return properties;
+    }
+
+    public void setProperties(List<DependencyPropertyPersist> properties) {
+        this.properties = properties;
+    }
+}

dmp-backend/core/src/main/java/eu/eudat/model/referencetypedefinition/AuthenticationConfiguration.java

@@ -4,6 +4,9 @@ import eu.eudat.commons.enums.ReferenceTypeExternalApiHTTPMethodType;
 
 public class AuthenticationConfiguration {
 
+    public final static String _enabled = "enabled";
+    private Boolean enabled;
+
     public final static String _authUrl = "authUrl";
     private String authUrl;
 
@@ -19,6 +22,14 @@ public class AuthenticationConfiguration {
     public final static String _type = "type";
     private String type;
 
+    public Boolean getEnabled() {
+        return enabled;
+    }
+
+    public void setEnabled(Boolean enabled) {
+        this.enabled = enabled;
+    }
+
     public String getAuthUrl() {
         return authUrl;
     }

dmp-backend/core/src/main/java/eu/eudat/model/referencetypedefinition/DependencyProperty.java

@@ -0,0 +1,38 @@
+package eu.eudat.model.referencetypedefinition;
+
+
+public class DependencyProperty {
+
+    public final static String _code = "code";
+    private String code;
+
+    public final static String _target = "target";
+    private String target;
+
+    public final static String _required = "required";
+    private Boolean required;
+
+    public String getCode() {
+        return code;
+    }
+
+    public void setCode(String code) {
+        this.code = code;
+    }
+
+    public String getTarget() {
+        return target;
+    }
+
+    public void setTarget(String target) {
+        this.target = target;
+    }
+
+    public Boolean getRequired() {
+        return required;
+    }
+
+    public void setRequired(Boolean required) {
+        this.required = required;
+    }
+}

dmp-backend/core/src/main/java/eu/eudat/model/referencetypedefinition/ReferenceTypeSourceBaseConfiguration.java

@@ -2,6 +2,8 @@ package eu.eudat.model.referencetypedefinition;
 
 import eu.eudat.commons.enums.ReferenceTypeSourceType;
 
+import java.util.List;
+
 
 public abstract class ReferenceTypeSourceBaseConfiguration {
 
@@ -17,6 +19,9 @@ public abstract class ReferenceTypeSourceBaseConfiguration {
     public final static String _type = "type";
     private ReferenceTypeSourceType type;
 
+    public final static String _dependencies = "dependencies";
+    private List<ReferenceTypeSourceBaseDependency> dependencies;
+
     public ReferenceTypeSourceType getType() {
         return type;
     }
@@ -48,4 +53,12 @@ public abstract class ReferenceTypeSourceBaseConfiguration {
     public void setOrdinal(Integer ordinal) {
         this.ordinal = ordinal;
     }
+
+    public List<ReferenceTypeSourceBaseDependency> getDependencies() {
+        return dependencies;
+    }
+
+    public void setDependencies(List<ReferenceTypeSourceBaseDependency> dependencies) {
+        this.dependencies = dependencies;
+    }
 }

dmp-backend/core/src/main/java/eu/eudat/model/referencetypedefinition/ReferenceTypeSourceBaseDependency.java

@@ -0,0 +1,52 @@
+package eu.eudat.model.referencetypedefinition;
+
+
+import java.util.List;
+
+public class ReferenceTypeSourceBaseDependency {
+
+    public final static String _referenceTypeCode = "referenceTypeCode";
+    private String referenceTypeCode;
+
+    public final static String _key = "key";
+    private String key;
+
+    public final static String _required = "required";
+    private Boolean required;
+
+    public final static String _properties = "properties";
+    private List<DependencyProperty> properties;
+
+
+    public String getReferenceTypeCode() {
+        return referenceTypeCode;
+    }
+
+    public void setReferenceTypeCode(String referenceTypeCode) {
+        this.referenceTypeCode = referenceTypeCode;
+    }
+
+    public String getKey() {
+        return key;
+    }
+
+    public void setKey(String key) {
+        this.key = key;
+    }
+
+    public Boolean getRequired() {
+        return required;
+    }
+
+    public void setRequired(Boolean required) {
+        this.required = required;
+    }
+
+    public List<DependencyProperty> getProperties() {
+        return properties;
+    }
+
+    public void setProperties(List<DependencyProperty> properties) {
+        this.properties = properties;
+    }
+}

dmp-backend/core/src/main/java/eu/eudat/query/ReferenceTypeQuery.java

@@ -142,7 +142,7 @@ public class ReferenceTypeQuery extends QueryBase<ReferenceTypeEntity> {
             predicates.add(inClause);
         }
         if (this.codes != null) {
-            CriteriaBuilder.In<String> inClause = queryContext.CriteriaBuilder.in(queryContext.Root.get(ReferenceEntity._type));
+            CriteriaBuilder.In<String> inClause = queryContext.CriteriaBuilder.in(queryContext.Root.get(ReferenceTypeEntity._code));
             for (String item : this.codes)
                 inClause.value(item);
             predicates.add(inClause);

dmp-backend/core/src/main/java/eu/eudat/service/deposit/RepositoryDepositService.java

@@ -23,8 +23,8 @@ import eu.eudat.service.entitydoi.EntityDoiService;
 import eu.eudat.utilities.pdf.PDFUtils;
 import gr.cite.commons.web.authz.service.AuthorizationService;
 import gr.cite.commons.web.oidc.apikey.ApiKeyCacheService;
-import gr.cite.commons.web.oidc.apikey.webflux.ApiKeyExchangeFilterFunction;
+//import gr.cite.commons.web.oidc.apikey.webflux.ApiKeyExchangeFilterFunction;
-import gr.cite.commons.web.oidc.apikey.webflux.ApiKeyWebfluxModel;
+//import gr.cite.commons.web.oidc.apikey.webflux.ApiKeyWebfluxModel;
 import gr.cite.tools.data.query.Ordering;
 import gr.cite.tools.fieldset.BaseFieldSet;
 import gr.cite.tools.fieldset.FieldSet;
@@ -83,11 +83,11 @@ public class RepositoryDepositService {
         DepositProperties.DepositSource source = depositProperties.getSources().stream().filter(depositSource -> depositSource.getCodes().contains(repoId)).findFirst().orElse(null);
         if (source != null) {
             String host = URI.create(source.getUrl()).getHost();
-            ApiKeyWebfluxModel apiKeyWebfluxModel = new ApiKeyWebfluxModel(host + "_" + source.getClientId(), source.getIssuerUrl(), source.getClientId(), source.getClientSecret(), source.getScope());
+//            ApiKeyWebfluxModel apiKeyWebfluxModel = new ApiKeyWebfluxModel(host + "_" + source.getClientId(), source.getIssuerUrl(), source.getClientId(), source.getClientSecret(), source.getScope());
-            ApiKeyExchangeFilterFunction apiKeyExchangeFilterFunction = new ApiKeyExchangeFilterFunction(this.apiKeyCacheService, apiKeyWebfluxModel);
+//            ApiKeyExchangeFilterFunction apiKeyExchangeFilterFunction = new ApiKeyExchangeFilterFunction(this.apiKeyCacheService, apiKeyWebfluxModel);
-            DepositRepository repository = new DepositRepository(webClientBuilder.baseUrl(source.getUrl() + "/api/deposit").filters(exchangeFilterFunctions -> exchangeFilterFunctions.add(apiKeyExchangeFilterFunction)).build());
+//            DepositRepository repository = new DepositRepository(webClientBuilder.baseUrl(source.getUrl() + "/api/deposit").filters(exchangeFilterFunctions -> exchangeFilterFunctions.add(apiKeyExchangeFilterFunction)).build());
-            source.getCodes().forEach(code -> this.clients.put(code, repository));
+//            source.getCodes().forEach(code -> this.clients.put(code, repository));
-            return repository;
+//            return repository;
         }
         return null;
     }

dmp-backend/core/src/main/java/eu/eudat/service/dmp/DmpServiceImpl.java

@@ -7,6 +7,9 @@ import eu.eudat.commons.JsonHandlingService;
 import eu.eudat.commons.XmlHandlingService;
 import eu.eudat.commons.enums.*;
 import eu.eudat.commons.scope.user.UserScope;
+import eu.eudat.commons.types.dmp.DmpBlueprintValueEntity;
+import eu.eudat.commons.types.dmp.DmpContactEntity;
+import eu.eudat.commons.types.dmp.DmpPropertiesEntity;
 import eu.eudat.commons.types.reference.DefinitionEntity;
 import eu.eudat.commons.types.reference.FieldEntity;
 import eu.eudat.convention.ConventionService;
@@ -22,6 +25,9 @@ import eu.eudat.model.deleter.DmpDescriptionTemplateDeleter;
 import eu.eudat.model.deleter.DmpReferenceDeleter;
 import eu.eudat.model.deleter.DmpUserDeleter;
 import eu.eudat.model.persist.*;
+import eu.eudat.model.persist.dmpproperties.DmpBlueprintValuePersist;
+import eu.eudat.model.persist.dmpproperties.DmpContactPersist;
+import eu.eudat.model.persist.dmpproperties.DmpPropertiesPersist;
 import eu.eudat.model.persist.referencedefinition.DefinitionPersist;
 import eu.eudat.model.persist.referencedefinition.FieldPersist;
 import eu.eudat.query.*;
@@ -408,7 +414,7 @@ public class DmpServiceImpl implements DmpService {
         }
 
         data.setLabel(model.getLabel());
-        data.setProperties(this.jsonHandlingService.toJson(model.getProperties()));
+        data.setProperties(this.jsonHandlingService.toJson(this.buildDmpPropertiesEntity(model.getProperties())));
         data.setDescription(model.getDescription());
         data.setAccessType(model.getAccessType());
         data.setUpdatedAt(Instant.now());
@@ -424,6 +430,46 @@ public class DmpServiceImpl implements DmpService {
         return data;
     }
 
+    private @NotNull DmpPropertiesEntity buildDmpPropertiesEntity(DmpPropertiesPersist persist){
+        DmpPropertiesEntity data = new DmpPropertiesEntity();
+        if (persist == null) return data;
+        if (!this.conventionService.isListNullOrEmpty(persist.getContacts())){
+            data.setContacts(new ArrayList<>());
+            for (DmpContactPersist contactPersist: persist.getContacts()) {
+                data.getContacts().add(this.buildDmpContactEntity(contactPersist));
+            }
+        }
+        if (!this.conventionService.isListNullOrEmpty(persist.getDmpBlueprintValues())){
+            data.setDmpBlueprintValues(new ArrayList<>());
+            for (DmpBlueprintValuePersist fieldValuePersist: persist.getDmpBlueprintValues()) {
+                data.getDmpBlueprintValues().add(this.buildDmpBlueprintValueEntity(fieldValuePersist));
+            }
+        }
+        return data;
+    }
+
+    private @NotNull DmpContactEntity buildDmpContactEntity(DmpContactPersist persist){
+        DmpContactEntity data = new DmpContactEntity();
+        if (persist == null) return data;
+
+        data.setEmail(persist.getEmail());
+        data.setLastName(persist.getLastName());
+        data.setFirstName(persist.getFirstName());
+        data.setUserId(persist.getUserId());
+        return data;
+    }
+
+
+
+    private @NotNull DmpBlueprintValueEntity buildDmpBlueprintValueEntity(DmpBlueprintValuePersist persist){
+        DmpBlueprintValueEntity data = new DmpBlueprintValueEntity();
+        if (persist == null) return data;
+
+        data.setValue(persist.getFieldValue());
+        data.setFieldId(persist.getFieldId());
+        return data;
+    }
+
     private void patchAndSaveReferences(List<DmpReferencePersist> models, UUID dmpId) throws InvalidApplicationException {
         if (models == null || models.isEmpty())
             return;
@@ -532,14 +578,14 @@ public class DmpServiceImpl implements DmpService {
         if (!this.conventionService.isListNullOrEmpty(persist.getFields())){
             data.setFields(new ArrayList<>());
             for (FieldPersist fieldPersist: persist.getFields()) {
-                data.getFields().add(this.buildFieldEntity(fieldPersist));
+                data.getFields().add(this.buildDmpContactEntity(fieldPersist));
             }
         }
 
         return data;
     }
 
-    private @NotNull FieldEntity buildFieldEntity(FieldPersist persist){
+    private @NotNull FieldEntity buildDmpContactEntity(FieldPersist persist){
         FieldEntity data = new FieldEntity();
         if (persist == null) return data;
 

dmp-backend/core/src/main/java/eu/eudat/service/elastic/ElasticService.java

@@ -24,4 +24,12 @@ public interface ElasticService {
     void persistDescription(DescriptionEntity description) throws IOException;
 
     void deleteDescription(DescriptionEntity description) throws IOException;
+
+	void deleteDmpIndex() throws IOException;
+
+    void deleteDescriptionIndex() throws IOException;
+
+	void resetDmpIndex() throws IOException;
+
+    void resetDescriptionIndex() throws IOException;
 }

dmp-backend/core/src/main/java/eu/eudat/service/elastic/ElasticServiceImpl.java

@@ -4,6 +4,7 @@ import co.elastic.clients.elasticsearch.ElasticsearchClient;
 import co.elastic.clients.elasticsearch._types.mapping.Property;
 import co.elastic.clients.elasticsearch._types.mapping.TypeMapping;
 import co.elastic.clients.elasticsearch.indices.*;
+import eu.eudat.authorization.Permission;
 import eu.eudat.commons.enums.IsActive;
 import eu.eudat.configurations.elastic.AppElasticProperties;
 import eu.eudat.data.DescriptionEntity;
@@ -17,12 +18,19 @@ import eu.eudat.model.Description;
 import eu.eudat.model.Dmp;
 import eu.eudat.query.DescriptionQuery;
 import eu.eudat.query.DmpQuery;
+import eu.eudat.service.dmpblueprint.DmpBlueprintServiceImpl;
+import gr.cite.commons.web.authz.service.AuthorizationService;
 import gr.cite.tools.data.builder.BuilderFactory;
+import gr.cite.tools.data.query.Ordering;
+import gr.cite.tools.data.query.Paging;
 import gr.cite.tools.data.query.QueryFactory;
 import gr.cite.tools.elastic.ElasticConstants;
 import gr.cite.tools.exception.MyNotFoundException;
 import gr.cite.tools.fieldset.BaseFieldSet;
+import gr.cite.tools.logging.LoggerService;
+import gr.cite.tools.logging.MapLogEntry;
 import jakarta.persistence.EntityManager;
+import org.slf4j.LoggerFactory;
 import org.springframework.context.MessageSource;
 import org.springframework.context.i18n.LocaleContextHolder;
 import org.springframework.data.elasticsearch.annotations.FieldType;
@@ -33,10 +41,10 @@ import java.util.*;
 import org.springframework.data.elasticsearch.client.elc.ElasticsearchTemplate;
 import org.springframework.data.elasticsearch.core.mapping.IndexCoordinates;
 import org.springframework.stereotype.Service;
-import org.springframework.web.context.annotation.RequestScope;
 
 @Service
 public class ElasticServiceImpl implements ElasticService {
+	private static final LoggerService logger = new LoggerService(LoggerFactory.getLogger(DmpBlueprintServiceImpl.class));
 	public final AppElasticProperties appElasticProperties;
 	private final ElasticsearchClient restHighLevelClient;
 	private final ElasticsearchTemplate elasticsearchTemplate;
@@ -44,8 +52,9 @@ public class ElasticServiceImpl implements ElasticService {
 	private final BuilderFactory builderFactory;
 	private final EntityManager entityManager;
 	private final MessageSource messageSource;
+	private final AuthorizationService authorizationService;
 
-	public ElasticServiceImpl(AppElasticProperties appElasticProperties, ElasticsearchClient restHighLevelClient, ElasticsearchTemplate elasticsearchTemplate, QueryFactory queryFactory, BuilderFactory builderFactory, EntityManager entityManager, MessageSource messageSource) {
+	public ElasticServiceImpl(AppElasticProperties appElasticProperties, ElasticsearchClient restHighLevelClient, ElasticsearchTemplate elasticsearchTemplate, QueryFactory queryFactory, BuilderFactory builderFactory, EntityManager entityManager, MessageSource messageSource, AuthorizationService authorizationService) {
 		this.appElasticProperties = appElasticProperties;
 		this.restHighLevelClient = restHighLevelClient;
 		this.elasticsearchTemplate = elasticsearchTemplate;
@@ -53,6 +62,7 @@ public class ElasticServiceImpl implements ElasticService {
 		this.builderFactory = builderFactory;
 		this.entityManager = entityManager;
 		this.messageSource = messageSource;
+		this.authorizationService = authorizationService;
 	}
 
 	@Override
@@ -115,7 +125,7 @@ public class ElasticServiceImpl implements ElasticService {
 			indexSettingsAnalysis.analyzer("icu_analyzer_text",  ab -> ab.custom(x-> x.filter("icu_folding", "english_stop", "english_stemmer").tokenizer("standard")));
 		}
 		indexSettings.analysis(indexSettingsAnalysis.build());
-		CreateIndexResponse createIndexResponse = restHighLevelClient.indices().create(new CreateIndexRequest.Builder().index(indexName).mappings(typeMapping.build()).settings(indexSettings.build()).build());
+		restHighLevelClient.indices().create(new CreateIndexRequest.Builder().index(indexName).mappings(typeMapping.build()).settings(indexSettings.build()).build());
 
 	}
 
@@ -252,6 +262,8 @@ public class ElasticServiceImpl implements ElasticService {
 	
 	//endregion
 	
+	//region persist delete
+
 	@Override
 	public void persistDmp(DmpEntity dmp) throws IOException {
 		if (!this.enabled()) return;
@@ -303,4 +315,83 @@ public class ElasticServiceImpl implements ElasticService {
 			this.elasticsearchTemplate.save(dmpElasticEntity, IndexCoordinates.of(this.appElasticProperties.getDmpIndexName()));
 		}
 	}
+	
+	//endregion
+	
+	//region manage
+	
+	@Override
+	public void deleteDmpIndex() throws IOException {
+		logger.debug(new MapLogEntry("delete dmp index"));
+		this.authorizationService.authorizeForce(Permission.ManageElastic);
+		
+		if (!this.enabled()) return;
+		boolean exists = this.existsDmpIndex();
+		if (exists) return ;
+		
+		this.restHighLevelClient.indices().delete(new DeleteIndexRequest.Builder().index(this.appElasticProperties.getDmpIndexName()).build());
+	}
+
+	@Override
+	public void deleteDescriptionIndex() throws IOException {
+		logger.debug(new MapLogEntry("delete description index"));
+		this.authorizationService.authorizeForce(Permission.ManageElastic);
+		
+		if (!this.enabled()) return;
+		boolean exists = this.existsDescriptionIndex();
+		if (exists) return ;
+		this.restHighLevelClient.indices().delete(new DeleteIndexRequest.Builder().index(this.appElasticProperties.getDescriptionIndexName()).build());
+	}
+
+	@Override
+	public void resetDmpIndex() throws IOException {
+		logger.debug(new MapLogEntry("reset dmp index"));
+		this.authorizationService.authorizeForce(Permission.ManageElastic);
+		
+		if (!this.enabled()) return;
+		this.deleteDmpIndex();
+
+		int page = 0;
+		int pageSize = this.appElasticProperties.getResetBatchSize();
+		List<DmpEntity> items;
+		do {
+			DmpQuery query = this.queryFactory.query(DmpQuery.class);
+			query.setOrder(new Ordering().addAscending(Dmp._createdAt));
+			query.setPage(new Paging(page * pageSize, pageSize));
+
+			items = this.queryFactory.query(DmpQuery.class).collect();
+			if (items != null && !items.isEmpty()) {
+				List<DmpElasticEntity> elasticEntities = this.builderFactory.builder(DmpElasticBuilder.class).build(items);
+				elasticsearchTemplate.save(elasticEntities, IndexCoordinates.of(this.appElasticProperties.getDmpIndexName()));
+				page++;
+			}
+		} while (items != null && !items.isEmpty());
+	}
+
+	@Override
+	public void resetDescriptionIndex() throws IOException {
+		logger.debug(new MapLogEntry("reset description index"));
+		this.authorizationService.authorizeForce(Permission.ManageElastic);
+		
+		if (!this.enabled()) return;
+		this.deleteDescriptionIndex();
+
+		int page = 0;
+		int pageSize = this.appElasticProperties.getResetBatchSize();
+		List<DescriptionEntity> items;
+		do {
+			DescriptionQuery query = this.queryFactory.query(DescriptionQuery.class);
+			query.setOrder(new Ordering().addAscending(Description._createdAt));
+			query.setPage(new Paging(page * pageSize, pageSize));
+
+			items = this.queryFactory.query(DescriptionQuery.class).collect();
+			if (items != null && !items.isEmpty()) {
+				List<DescriptionElasticEntity> elasticEntities = this.builderFactory.builder(DescriptionElasticBuilder.class).build(items);
+				elasticsearchTemplate.save(elasticEntities, IndexCoordinates.of(this.appElasticProperties.getDescriptionIndexName()));
+				page++;
+			}
+		} while (items != null && !items.isEmpty());
+	}
+	
+	//endregion
 }

dmp-backend/core/src/main/java/eu/eudat/service/referencetype/ReferenceTypeServiceImpl.java

@@ -52,14 +52,13 @@ public class ReferenceTypeServiceImpl implements ReferenceTypeService {
     private final BuilderFactory builderFactory;
     private final ConventionService conventionService;
     private final MessageSource messageSource;
-    private final QueryFactory queryFactory;
     private final XmlHandlingService xmlHandlingService;
     private final ErrorThesaurusProperties errors;
 
 
     public ReferenceTypeServiceImpl(
             EntityManager entityManager, AuthorizationService authorizationService, DeleterFactory deleterFactory, BuilderFactory builderFactory,
-            ConventionService conventionService, MessageSource messageSource, QueryFactory queryFactory,
+            ConventionService conventionService, MessageSource messageSource,
             XmlHandlingService xmlHandlingService, ErrorThesaurusProperties errors) {
         this.entityManager = entityManager;
         this.authorizationService = authorizationService;
@@ -67,7 +66,6 @@ public class ReferenceTypeServiceImpl implements ReferenceTypeService {
         this.builderFactory = builderFactory;
         this.conventionService = conventionService;
         this.messageSource = messageSource;
-        this.queryFactory = queryFactory;
         this.xmlHandlingService = xmlHandlingService;
         this.errors = errors;
     }
@@ -185,6 +183,13 @@ public class ReferenceTypeServiceImpl implements ReferenceTypeService {
         data.setLabel(persist.getLabel());
         data.setOrdinal(persist.getOrdinal());
 
+        if (!this.conventionService.isListNullOrEmpty(persist.getDependencies())){
+            data.setDependencies(new ArrayList<>());
+            for (ReferenceTypeSourceBaseDependencyPersist dependencyPersist: persist.getDependencies()) {
+                data.getDependencies().add(this.buildDependencyEntity(dependencyPersist));
+            }
+        }
+
         return data;
     }
 
@@ -218,6 +223,7 @@ public class ReferenceTypeServiceImpl implements ReferenceTypeService {
         AuthenticationConfigurationEntity data = new AuthenticationConfigurationEntity();
         if (persist == null) return data;
 
+        data.setEnabled(persist.getEnabled());
         data.setAuthUrl(persist.getAuthUrl());
         data.setAuthMethod(persist.getAuthMethod());
         data.setAuthRequestBody(persist.getAuthRequestBody());
@@ -249,6 +255,35 @@ public class ReferenceTypeServiceImpl implements ReferenceTypeService {
         return data;
     }
 
+    private @NotNull ReferenceTypeSourceBaseDependencyEntity buildDependencyEntity(ReferenceTypeSourceBaseDependencyPersist persist){
+        ReferenceTypeSourceBaseDependencyEntity data = new ReferenceTypeSourceBaseDependencyEntity();
+        if (persist == null) return data;
+
+        data.setReferenceTypeCode(persist.getReferenceTypeCode());
+        data.setKey(persist.getKey());
+        data.setRequired(persist.getRequired());
+
+        if (!this.conventionService.isListNullOrEmpty(persist.getProperties())){
+            data.setProperties(new ArrayList<>());
+            for (DependencyPropertyPersist propertyPersist: persist.getProperties()) {
+                data.getProperties().add(this.buildPropertyEntity(propertyPersist));
+            }
+        }
+
+        return data;
+    }
+
+    private @NotNull DependencyPropertyEntity buildPropertyEntity(DependencyPropertyPersist persist){
+        DependencyPropertyEntity data = new DependencyPropertyEntity();
+        if (persist == null) return data;
+
+        data.setCode(persist.getCode());
+        data.setTarget(persist.getTarget());
+        data.setRequired(persist.getRequired());
+
+        return data;
+    }
+
 
     public void deleteAndSave(UUID id) throws MyForbiddenException, InvalidApplicationException {
         logger.debug("deleting : {}", id);

dmp-backend/data/src/main/java/eu/eudat/data/dao/entities/DmpDatasetProfileDao.java

@@ -1,10 +0,0 @@
-package eu.eudat.data.dao.entities;
-
-import eu.eudat.data.DmpDescriptionTemplateEntity;
-import eu.eudat.data.dao.DatabaseAccessLayer;
-import eu.eudat.model.DmpDescriptionTemplate;
-
-import java.util.UUID;
-
-public interface DmpDatasetProfileDao extends DatabaseAccessLayer<DmpDescriptionTemplateEntity, UUID> {
-}

dmp-backend/data/src/main/java/eu/eudat/data/dao/entities/DmpDatasetProfileDaoImpl.java

@@ -1,53 +0,0 @@
-package eu.eudat.data.dao.entities;
-
-import eu.eudat.data.DmpDescriptionTemplateEntity;
-import eu.eudat.data.dao.DatabaseAccess;
-import eu.eudat.data.dao.databaselayer.service.DatabaseService;
-import eu.eudat.model.DmpDescriptionTemplate;
-import eu.eudat.queryable.QueryableList;
-import org.springframework.beans.factory.annotation.Autowired;
-import org.springframework.scheduling.annotation.Async;
-import org.springframework.stereotype.Service;
-
-import javax.management.InvalidApplicationException;
-import java.util.UUID;
-import java.util.concurrent.CompletableFuture;
-
-@Service("dmpDatasetProfileDao")
-public class DmpDatasetProfileDaoImpl extends DatabaseAccess<DmpDescriptionTemplateEntity> implements DmpDatasetProfileDao {
-    @Autowired
-    public DmpDatasetProfileDaoImpl(DatabaseService<DmpDescriptionTemplateEntity> databaseService) {
-        super(databaseService);
-    }
-
-    @Override
-    public DmpDescriptionTemplateEntity createOrUpdate(DmpDescriptionTemplateEntity item) {
-        return this.getDatabaseService().createOrUpdate(item, DmpDescriptionTemplateEntity.class);
-    }
-
-    @Override
-    @Async
-    public CompletableFuture<DmpDescriptionTemplateEntity> createOrUpdateAsync(DmpDescriptionTemplateEntity item) {
-        return CompletableFuture.supplyAsync(() -> this.createOrUpdate(item));
-    }
-
-    @Override
-    public DmpDescriptionTemplateEntity find(UUID id) throws InvalidApplicationException {
-        return this.getDatabaseService().getQueryable(DmpDescriptionTemplateEntity.class).where((builder, root) -> builder.equal(root.get("id"), id)).getSingle();
-    }
-
-    @Override
-    public DmpDescriptionTemplateEntity find(UUID id, String hint) {
-        throw new UnsupportedOperationException();
-    }
-
-    @Override
-    public void delete(DmpDescriptionTemplateEntity item) {
-        this.getDatabaseService().delete(item);
-    }
-
-    @Override
-    public QueryableList<DmpDescriptionTemplateEntity> asQueryable() {
-        return this.getDatabaseService().getQueryable(DmpDescriptionTemplateEntity.class);
-    }
-}

dmp-backend/data/src/main/java/eu/eudat/data/dao/entities/UserDatasetProfileDao.java

@@ -1,12 +0,0 @@
-package eu.eudat.data.dao.entities;
-
-import eu.eudat.data.UserDescriptionTemplateEntity;
-import eu.eudat.data.dao.DatabaseAccessLayer;
-
-import java.util.UUID;
-
-/**
- * Created by ikalyvas on 2/8/2018.
- */
-public interface UserDatasetProfileDao extends DatabaseAccessLayer<UserDescriptionTemplateEntity, UUID> {
-}

dmp-backend/data/src/main/java/eu/eudat/data/dao/entities/UserDatasetProfileDaoImpl.java

@@ -1,53 +0,0 @@
-package eu.eudat.data.dao.entities;
-
-import eu.eudat.data.UserDescriptionTemplateEntity;
-import eu.eudat.data.dao.DatabaseAccess;
-import eu.eudat.data.dao.databaselayer.service.DatabaseService;
-import eu.eudat.queryable.QueryableList;
-import org.springframework.beans.factory.annotation.Autowired;
-import org.springframework.scheduling.annotation.Async;
-import org.springframework.stereotype.Component;
-
-import javax.management.InvalidApplicationException;
-import java.util.UUID;
-import java.util.concurrent.CompletableFuture;
-
-@Component("userDatasetProfileDao")
-public class UserDatasetProfileDaoImpl extends DatabaseAccess<UserDescriptionTemplateEntity> implements UserDatasetProfileDao {
-
-    @Autowired
-    public UserDatasetProfileDaoImpl(DatabaseService<UserDescriptionTemplateEntity> databaseService) {
-        super(databaseService);
-    }
-
-    @Override
-    public UserDescriptionTemplateEntity createOrUpdate(UserDescriptionTemplateEntity item) {
-        return this.getDatabaseService().createOrUpdate(item, UserDescriptionTemplateEntity.class);
-    }
-
-    @Override
-    public UserDescriptionTemplateEntity find(UUID id) throws InvalidApplicationException {
-        return this.getDatabaseService().getQueryable(UserDescriptionTemplateEntity.class).where((builder, root) -> builder.equal(root.get("id"), id)).getSingleOrDefault();
-    }
-
-    @Override
-    public void delete(UserDescriptionTemplateEntity item) {
-        this.getDatabaseService().delete(item);
-    }
-
-    @Override
-    public QueryableList<UserDescriptionTemplateEntity> asQueryable() {
-        return this.getDatabaseService().getQueryable(UserDescriptionTemplateEntity.class);
-    }
-
-    @Async
-    @Override
-    public CompletableFuture<UserDescriptionTemplateEntity> createOrUpdateAsync(UserDescriptionTemplateEntity item) {
-        return CompletableFuture.supplyAsync(() -> this.createOrUpdate(item));
-    }
-
-    @Override
-    public UserDescriptionTemplateEntity find(UUID id, String hint) {
-        throw new UnsupportedOperationException();
-    }
-}

dmp-backend/data/src/main/java/eu/eudat/data/dao/entities/UserDmpDao.java

@@ -1,12 +0,0 @@
-package eu.eudat.data.dao.entities;
-
-import eu.eudat.data.DmpUserEntity;
-import eu.eudat.data.dao.DatabaseAccessLayer;
-
-import java.util.UUID;
-
-/**
- * Created by ikalyvas on 2/8/2018.
- */
-public interface UserDmpDao extends DatabaseAccessLayer<DmpUserEntity, UUID> {
-}

dmp-backend/data/src/main/java/eu/eudat/data/dao/entities/UserDmpDaoImpl.java

@@ -1,56 +0,0 @@
-package eu.eudat.data.dao.entities;
-
-import eu.eudat.data.DmpUserEntity;
-import eu.eudat.data.dao.DatabaseAccess;
-import eu.eudat.data.dao.databaselayer.service.DatabaseService;
-import eu.eudat.queryable.QueryableList;
-import org.springframework.beans.factory.annotation.Autowired;
-import org.springframework.scheduling.annotation.Async;
-import org.springframework.stereotype.Component;
-
-import javax.management.InvalidApplicationException;
-import java.util.UUID;
-import java.util.concurrent.CompletableFuture;
-
-/**
- * Created by ikalyvas on 2/8/2018.
- */
-@Component("userDmpDao")
-public class UserDmpDaoImpl extends DatabaseAccess<DmpUserEntity> implements UserDmpDao {
-
-    @Autowired
-    public UserDmpDaoImpl(DatabaseService<DmpUserEntity> databaseService) {
-        super(databaseService);
-    }
-
-    @Override
-    public DmpUserEntity createOrUpdate(DmpUserEntity item) {
-        return this.getDatabaseService().createOrUpdate(item, DmpUserEntity.class);
-    }
-
-    @Override
-    public DmpUserEntity find(UUID id) throws InvalidApplicationException {
-        return this.getDatabaseService().getQueryable(DmpUserEntity.class).where((builder, root) -> builder.equal(root.get("id"), id)).getSingleOrDefault();
-    }
-
-    @Override
-    public void delete(DmpUserEntity item) {
-        this.getDatabaseService().delete(item);
-    }
-
-    @Override
-    public QueryableList<DmpUserEntity> asQueryable() {
-        return this.getDatabaseService().getQueryable(DmpUserEntity.class);
-    }
-
-    @Async
-    @Override
-    public CompletableFuture<DmpUserEntity> createOrUpdateAsync(DmpUserEntity item) {
-        return CompletableFuture.supplyAsync(() -> this.createOrUpdate(item));
-    }
-
-    @Override
-    public DmpUserEntity find(UUID id, String hint) {
-        throw new UnsupportedOperationException();
-    }
-}

dmp-backend/data/src/main/java/eu/eudat/data/dao/entities/UserInfoDao.java

@@ -1,15 +0,0 @@
-package eu.eudat.data.dao.entities;
-
-import eu.eudat.data.dao.DatabaseAccessLayer;
-import eu.eudat.data.dao.criteria.UserInfoCriteria;
-import eu.eudat.data.UserEntity;
-import eu.eudat.queryable.QueryableList;
-
-import java.util.UUID;
-
-public interface UserInfoDao extends DatabaseAccessLayer<UserEntity, UUID> {
-
-    QueryableList<UserEntity> getWithCriteria(UserInfoCriteria criteria);
-
-    QueryableList<UserEntity> getAuthenticated(QueryableList<UserEntity> users, UUID principalId);
-}

dmp-backend/data/src/main/java/eu/eudat/data/dao/entities/UserInfoDaoImpl.java

@@ -1,82 +0,0 @@
-package eu.eudat.data.dao.entities;
-
-import eu.eudat.data.dao.DatabaseAccess;
-import eu.eudat.data.dao.criteria.UserInfoCriteria;
-import eu.eudat.data.dao.databaselayer.service.DatabaseService;
-import eu.eudat.data.UserEntity;
-import eu.eudat.queryable.QueryableList;
-import eu.eudat.queryable.types.FieldSelectionType;
-import eu.eudat.queryable.types.SelectionField;
-import org.springframework.beans.factory.annotation.Autowired;
-import org.springframework.scheduling.annotation.Async;
-import org.springframework.stereotype.Component;
-
-import javax.management.InvalidApplicationException;
-import java.util.Arrays;
-import java.util.UUID;
-import java.util.concurrent.CompletableFuture;
-
-@Component("userInfoDao")
-public class UserInfoDaoImpl extends DatabaseAccess<UserEntity> implements UserInfoDao {
-
-	@Autowired
-	public UserInfoDaoImpl(DatabaseService<UserEntity> databaseService) {
-		super(databaseService);
-	}
-
-	@Override
-	public QueryableList<UserEntity> getWithCriteria(UserInfoCriteria criteria) {
-		QueryableList<UserEntity> users = this.getDatabaseService().getQueryable(UserEntity.class);
-		users.where(((builder, root) -> builder.equal(root.get("userStatus"), 0)));
-		if (criteria.getAppRoles() != null && !criteria.getAppRoles().isEmpty())
-			users.where((builder, root) -> root.join("userRoles").get("role").in(criteria.getAppRoles()));
-		if (criteria.getLike() != null)
-			users.where((builder, root) -> builder.or(builder.like(builder.upper(root.get("name")), "%" + criteria.getLike().toUpperCase() + "%"), builder.like(root.get("email"), "%" + criteria.getLike() + "%")));
-		if (criteria.getEmail() != null)
-			users.where((builder, root) -> builder.equal(root.get("email"), criteria.getEmail()));
-		if (criteria.getCollaboratorLike() != null)
-			users.where((builder, root) -> builder.or(builder.like(builder.upper(root.get("name")), "%" + criteria.getCollaboratorLike().toUpperCase() + "%"), builder.like(root.get("email"), "%" + criteria.getCollaboratorLike() + "%")));
-		return users;
-	}
-
-	@Override
-	public QueryableList<UserEntity> getAuthenticated(QueryableList<UserEntity> users, UUID principalId) {
-		users.initSubQuery(UUID.class).where((builder, root) ->
-				builder.and(root.join("dmps").get("id").in(
-						users.subQuery((builder1, root1) -> builder1.equal(root1.get("id"), principalId),
-								Arrays.asList(new SelectionField(FieldSelectionType.COMPOSITE_FIELD, "dmps:id")))),
-						builder.notEqual(root.get("id"), principalId)));
-		return users;
-	}
-
-	@Override
-	public UserEntity createOrUpdate(UserEntity item) {
-		return this.getDatabaseService().createOrUpdate(item, UserEntity.class);
-	}
-
-	@Override
-	public UserEntity find(UUID id) throws InvalidApplicationException {
-		return this.getDatabaseService().getQueryable(UserEntity.class).where((builder, root) -> builder.equal(root.get("id"), id)).getSingle();
-	}
-
-	@Override
-	public void delete(UserEntity item) {
-		this.getDatabaseService().delete(item);
-	}
-
-	@Override
-	public QueryableList<UserEntity> asQueryable() {
-		return this.getDatabaseService().getQueryable(UserEntity.class);
-	}
-
-	@Async
-	@Override
-	public CompletableFuture<UserEntity> createOrUpdateAsync(UserEntity item) {
-		return CompletableFuture.supplyAsync(() -> this.createOrUpdate(item));
-	}
-
-	@Override
-	public UserEntity find(UUID id, String hint) {
-		throw new UnsupportedOperationException();
-	}
-}

dmp-backend/data/src/main/java/eu/eudat/data/dao/entities/UserRoleDao.java

@@ -1,19 +0,0 @@
-package eu.eudat.data.dao.entities;
-
-import eu.eudat.data.dao.DatabaseAccessLayer;
-import eu.eudat.data.dao.criteria.UserRoleCriteria;
-import eu.eudat.data.UserEntity;
-import eu.eudat.data.UserRoleEntity;
-import eu.eudat.queryable.QueryableList;
-
-import javax.management.InvalidApplicationException;
-import java.util.List;
-import java.util.UUID;
-
-
-public interface UserRoleDao extends DatabaseAccessLayer<UserRoleEntity, UUID> {
-
-    QueryableList<UserRoleEntity> getWithCriteria(UserRoleCriteria criteria);
-
-    List<UserRoleEntity> getUserRoles(UserEntity userInfo) throws InvalidApplicationException;
-}

dmp-backend/data/src/main/java/eu/eudat/data/dao/entities/UserRoleDaoImpl.java

@@ -1,72 +0,0 @@
-package eu.eudat.data.dao.entities;
-
-import eu.eudat.data.dao.DatabaseAccess;
-import eu.eudat.data.dao.criteria.UserRoleCriteria;
-import eu.eudat.data.dao.databaselayer.service.DatabaseService;
-import eu.eudat.data.UserEntity;
-import eu.eudat.data.UserRoleEntity;
-import eu.eudat.queryable.QueryableList;
-import org.springframework.beans.factory.annotation.Autowired;
-import org.springframework.scheduling.annotation.Async;
-import org.springframework.stereotype.Component;
-
-import javax.management.InvalidApplicationException;
-import java.util.List;
-import java.util.UUID;
-import java.util.concurrent.CompletableFuture;
-
-
-@Component("userRoleDao")
-public class UserRoleDaoImpl extends DatabaseAccess<UserRoleEntity> implements UserRoleDao {
-
-    @Autowired
-    public UserRoleDaoImpl(DatabaseService<UserRoleEntity> databaseService) {
-        super(databaseService);
-    }
-
-    @Override
-    public UserRoleEntity createOrUpdate(UserRoleEntity item) {
-        return this.getDatabaseService().createOrUpdate(item, UserRoleEntity.class);
-    }
-
-    @Override
-    public UserRoleEntity find(UUID id) throws InvalidApplicationException {
-        return this.getDatabaseService().getQueryable(UserRoleEntity.class).where((builder, root) -> builder.equal(root.get("id"), id)).getSingleOrDefault();
-    }
-
-    @Override
-    public List<UserRoleEntity> getUserRoles(UserEntity userInfo) throws InvalidApplicationException {
-        return this.getDatabaseService().getQueryable(UserRoleEntity.class).where((builder, root) -> builder.equal(root.get("userInfo"), userInfo)).toList();
-    }
-
-    @Override
-    public void delete(UserRoleEntity item) {
-        this.getDatabaseService().delete(item);
-    }
-
-    @Override
-    public QueryableList<UserRoleEntity> getWithCriteria(UserRoleCriteria criteria) {
-        QueryableList<UserRoleEntity> query = this.getDatabaseService().getQueryable(UserRoleEntity.class);
-        if (criteria.getLike() != null)
-            query.where((builder, root) -> builder.equal(root.get("userInfo").get("name"), criteria.getLike()));
-        if (criteria.getAppRoles() != null && !criteria.getAppRoles().isEmpty())
-            query.where((builder, root) -> root.get("role").in(criteria.getAppRoles()));
-        return query;
-    }
-
-    @Override
-    public QueryableList<UserRoleEntity> asQueryable() {
-        return this.getDatabaseService().getQueryable(UserRoleEntity.class);
-    }
-
-    @Async
-    @Override
-    public CompletableFuture<UserRoleEntity> createOrUpdateAsync(UserRoleEntity item) {
-        return CompletableFuture.supplyAsync(() -> this.createOrUpdate(item));
-    }
-
-    @Override
-    public UserRoleEntity find(UUID id, String hint) {
-        throw new UnsupportedOperationException();
-    }
-}

dmp-backend/data/src/main/java/eu/eudat/data/dao/entities/security/CredentialDao.java

@@ -1,13 +0,0 @@
-package eu.eudat.data.dao.entities.security;
-
-import eu.eudat.data.UserCredentialEntity;
-import eu.eudat.data.dao.DatabaseAccessLayer;
-
-import javax.management.InvalidApplicationException;
-import java.util.UUID;
-
-
-public interface CredentialDao extends DatabaseAccessLayer<UserCredentialEntity, UUID> {
-
-    UserCredentialEntity getLoggedInCredentials(String username, String secret, Integer provider) throws InvalidApplicationException;
-}

dmp-backend/data/src/main/java/eu/eudat/data/dao/entities/security/CredentialDaoImpl.java

@@ -1,62 +0,0 @@
-package eu.eudat.data.dao.entities.security;
-
-import eu.eudat.data.UserCredentialEntity;
-import eu.eudat.data.dao.DatabaseAccess;
-import eu.eudat.data.dao.databaselayer.service.DatabaseService;
-import eu.eudat.queryable.QueryableList;
-import org.springframework.beans.factory.annotation.Autowired;
-import org.springframework.stereotype.Component;
-
-import javax.management.InvalidApplicationException;
-import java.util.UUID;
-import java.util.concurrent.CompletableFuture;
-
-
-@Component("credentialDao")
-public class CredentialDaoImpl extends DatabaseAccess<UserCredentialEntity> implements CredentialDao {
-
-    @Autowired
-    public CredentialDaoImpl(DatabaseService<UserCredentialEntity> databaseService) {
-        super(databaseService);
-    }
-
-    @Override
-    public UserCredentialEntity createOrUpdate(UserCredentialEntity item) {
-        return this.getDatabaseService().createOrUpdate(item, UserCredentialEntity.class);
-    }
-
-    @Override
-    public UserCredentialEntity find(UUID id) throws InvalidApplicationException {
-        return this.getDatabaseService().getQueryable(UserCredentialEntity.class).where((builder, root) -> builder.equal(root.get("id"), id)).getSingleOrDefault();
-    }
-
-    @Override
-    public UserCredentialEntity getLoggedInCredentials(String username, String secret, Integer provider) throws InvalidApplicationException {
-        return this.getDatabaseService().getQueryable(UserCredentialEntity.class).where(((builder, root) ->
-                builder.and(
-                        builder.equal(root.get("publicValue"), username),
-                        builder.equal(root.get("secret"), secret),
-                        builder.equal(root.get("provider"), provider)
-                ))).getSingleOrDefault();
-    }
-
-    @Override
-    public void delete(UserCredentialEntity item) {
-        this.getDatabaseService().delete(item);
-    }
-
-    @Override
-    public QueryableList<UserCredentialEntity> asQueryable() {
-        return this.getDatabaseService().getQueryable(UserCredentialEntity.class);
-    }
-
-    @Override
-    public CompletableFuture<UserCredentialEntity> createOrUpdateAsync(UserCredentialEntity item) {
-        return CompletableFuture.supplyAsync(() -> this.createOrUpdate(item));
-    }
-
-    @Override
-    public UserCredentialEntity find(UUID id, String hint) {
-        throw new UnsupportedOperationException();
-    }
-}

dmp-backend/data/src/main/java/eu/eudat/data/query/items/item/userinfo/UserInfoRequestItem.java

@@ -1,21 +0,0 @@
-package eu.eudat.data.query.items.item.userinfo;
-
-import eu.eudat.data.dao.criteria.UserInfoCriteria;
-import eu.eudat.data.UserEntity;
-import eu.eudat.data.query.definition.Query;
-import eu.eudat.queryable.QueryableList;
-
-
-public class UserInfoRequestItem extends Query<UserInfoCriteria, UserEntity> {
-    @Override
-    public QueryableList<UserEntity> applyCriteria() {
-        QueryableList<UserEntity> users = this.getQuery();
-        if (this.getCriteria().getAppRoles() != null && !this.getCriteria().getAppRoles().isEmpty())
-            users.where((builder, root) -> root.join("userRoles").get("role").in(this.getCriteria().getAppRoles()));
-        if (this.getCriteria().getLike() != null)
-            users.where((builder, root) -> builder.or(builder.like(builder.upper(root.get("name")), "%" + this.getCriteria().getLike().toUpperCase() + "%"), builder.like(root.get("email"), "%" + this.getCriteria().getLike() + "%")));
-        if (this.getCriteria().getEmail() != null)
-            users.where((builder, root) -> builder.equal(root.get("email"), this.getCriteria().getEmail()));
-        return users;
-    }
-}

dmp-backend/data/src/main/java/eu/eudat/data/query/items/table/userinfo/UserInfoTableRequestItem.java

@@ -1,29 +0,0 @@
-package eu.eudat.data.query.items.table.userinfo;
-
-import eu.eudat.data.dao.criteria.UserInfoCriteria;
-import eu.eudat.data.UserEntity;
-import eu.eudat.data.query.definition.TableQuery;
-import eu.eudat.queryable.QueryableList;
-
-import java.util.UUID;
-
-
-public class UserInfoTableRequestItem extends TableQuery<UserInfoCriteria, UserEntity, UUID> {
-
-    @Override
-    public QueryableList<UserEntity> applyCriteria() {
-        QueryableList<UserEntity> users = this.getQuery();
-        if (this.getCriteria().getAppRoles() != null && !this.getCriteria().getAppRoles().isEmpty())
-            users.where((builder, root) -> root.join("userRoles").get("role").in(this.getCriteria().getAppRoles()));
-        if (this.getCriteria().getLike() != null)
-            users.where((builder, root) -> builder.or(builder.like(builder.upper(root.get("name")), "%" + this.getCriteria().getLike().toUpperCase() + "%"), builder.like(root.get("email"), "%" + this.getCriteria().getLike() + "%")));
-        if (this.getCriteria().getEmail() != null)
-            users.where((builder, root) -> builder.equal(root.get("email"), this.getCriteria().getEmail()));
-        return users;
-    }
-
-    @Override
-    public QueryableList<UserEntity> applyPaging(QueryableList<UserEntity> items) {
-        return null;
-    }
-}

dmp-backend/data/src/main/java/eu/eudat/query/DMPQuery.java

@@ -23,7 +23,7 @@ public class DMPQuery extends Query<DmpEntity, UUID> {
 	private String label;
 	private int version;
 	private GrantQuery grantQuery;
-	private UserQueryOld userQuery;
+//	private UserQueryOld userQuery;
 	private DatasetQuery datasetQuery;
 	private List<Integer> statuses;
 	private Date created;
@@ -101,13 +101,13 @@ public class DMPQuery extends Query<DmpEntity, UUID> {
 		this.modified = modified;
 	}
 
-	public UserQueryOld getUserQuery() {
+//	public UserQueryOld getUserQuery() {
-		return userQuery;
+//		return userQuery;
-	}
+//	}
-
+//
-	public void setUserQuery(UserQueryOld userQuery) {
+//	public void setUserQuery(UserQueryOld userQuery) {
-		this.userQuery = userQuery;
+//		this.userQuery = userQuery;
-	}
+//	}
 
 	public DatasetQuery getDatasetQuery() {
 		return datasetQuery;
@@ -129,10 +129,10 @@ public class DMPQuery extends Query<DmpEntity, UUID> {
 		if (this.getStatuses() != null && !this.getStatuses().isEmpty()) {
 			query.where((builder, root) -> root.get("status").in(this.getStatuses()));
 		}
-		if (this.userQuery != null) {
+//		if (this.userQuery != null) {
-			Subquery<UserEntity> userInfoSubQuery = this.userQuery.getQuery().query(Arrays.asList(new SelectionField(FieldSelectionType.FIELD, "id")));
+//			Subquery<UserEntity> userInfoSubQuery = this.userQuery.getQuery().query(Arrays.asList(new SelectionField(FieldSelectionType.FIELD, "id")));
-			query.where((builder, root) -> root.get("creator").get("id").in(userInfoSubQuery));
+//			query.where((builder, root) -> root.get("creator").get("id").in(userInfoSubQuery));
-		}
+//		}
 		if(this.datasetQuery != null){
 			Subquery<DescriptionEntity> datasetSubQuery = this.datasetQuery.getQuery().query(Arrays.asList(new SelectionField(FieldSelectionType.COMPOSITE_FIELD, "dmp:id")));
 			query.where((builder, root) -> root.get("id").in(datasetSubQuery ));

dmp-backend/data/src/main/java/eu/eudat/query/DatasetProfileQuery.java

@@ -1,14 +0,0 @@
-package eu.eudat.query;
-
-public class DatasetProfileQuery {
-
-    private UserQueryOld userQuery;
-
-    public UserQueryOld getUserQuery() {
-        return userQuery;
-    }
-
-    public void setUserQuery(UserQueryOld userQuery) {
-        this.userQuery = userQuery;
-    }
-}

dmp-backend/data/src/main/java/eu/eudat/query/GrantQuery.java

@@ -23,7 +23,7 @@ public class GrantQuery extends Query<Grant, UUID> {
 	private List<Integer> statuses;
 	private Date created;
 	private Date modified;
-	private UserQueryOld userQuery;
+//	private UserQueryOld userQuery;
 
 	public GrantQuery(DatabaseAccessLayer<Grant, UUID> databaseAccessLayer) {
 		super(databaseAccessLayer);
@@ -81,13 +81,13 @@ public class GrantQuery extends Query<Grant, UUID> {
 		this.modified = modified;
 	}
 
-	public UserQueryOld getUserQuery() {
+//	public UserQueryOld getUserQuery() {
-		return userQuery;
+//		return userQuery;
-	}
+//	}
-
+//
-	public void setUserQuery(UserQueryOld userQuery) {
+//	public void setUserQuery(UserQueryOld userQuery) {
-		this.userQuery = userQuery;
+//		this.userQuery = userQuery;
-	}
+//	}
 
 	@Override
 	public QueryableList<Grant> getQuery() throws InvalidApplicationException {
@@ -98,10 +98,10 @@ public class GrantQuery extends Query<Grant, UUID> {
 			query.where((builder, root) -> root.get("id").in(this.ids));
 		if (this.getStatuses() != null && !this.getStatuses().isEmpty())
 			query.where((builder, root) -> root.get("status").in(this.getStatuses()));
-		if (this.userQuery != null) {
+//		if (this.userQuery != null) {
-			Subquery<UserEntity> userInfoSubQuery = this.userQuery.getQuery().query(Arrays.asList(new SelectionField(FieldSelectionType.FIELD, "id")));
+//			Subquery<UserEntity> userInfoSubQuery = this.userQuery.getQuery().query(Arrays.asList(new SelectionField(FieldSelectionType.FIELD, "id")));
-			query.where((builder, root) -> root.get("creationUser").get("id").in(userInfoSubQuery));
+//			query.where((builder, root) -> root.get("creationUser").get("id").in(userInfoSubQuery));
-		}
+//		}
 		if (!this.getSelectionFields().isEmpty() && this.getSelectionFields() != null) {
 			query.withFields(this.getSelectionFields());
 		}

dmp-backend/data/src/main/java/eu/eudat/query/LockQuery.java

@@ -19,7 +19,7 @@ public class LockQuery extends Query<Lock, UUID> {
 
 	private UUID id;
 	private UUID target;
-	private UserQueryOld userQuery;
+//	private UserQueryOld userQuery;
 	private Date touchedAt;
 
 	public UUID getId() {
@@ -38,13 +38,13 @@ public class LockQuery extends Query<Lock, UUID> {
 		this.target = target;
 	}
 
-	public UserQueryOld getUserQuery() {
+//	public UserQueryOld getUserQuery() {
-		return userQuery;
+//		return userQuery;
-	}
+//	}
-
+//
-	public void setUserQuery(UserQueryOld userQuery) {
+//	public void setUserQuery(UserQueryOld userQuery) {
-		this.userQuery = userQuery;
+//		this.userQuery = userQuery;
-	}
+//	}
 
 	public Date getTouchedAt() {
 		return touchedAt;
@@ -71,10 +71,10 @@ public class LockQuery extends Query<Lock, UUID> {
 		if (this.target != null) {
 			query.where(((builder, root) -> builder.equal(root.get("target"), this.target)));
 		}
-		if (this.userQuery != null) {
+//		if (this.userQuery != null) {
-			Subquery<UserEntity> userSubQuery = this.userQuery.getQuery().query(Arrays.asList(new SelectionField(FieldSelectionType.FIELD, "id")));
+//			Subquery<UserEntity> userSubQuery = this.userQuery.getQuery().query(Arrays.asList(new SelectionField(FieldSelectionType.FIELD, "id")));
-			query.where((builder, root) -> root.get("lockedBy").get("id").in(userSubQuery));
+//			query.where((builder, root) -> root.get("lockedBy").get("id").in(userSubQuery));
-		}
+//		}
 		return query;
 	}
 }

dmp-backend/data/src/main/java/eu/eudat/query/UserQueryOld.java

@@ -1,37 +0,0 @@
-package eu.eudat.query;
-
-import eu.eudat.data.dao.DatabaseAccessLayer;
-import eu.eudat.data.UserEntity;
-import eu.eudat.queryable.QueryableList;
-
-import java.util.List;
-import java.util.UUID;
-
-public class UserQueryOld extends Query<UserEntity, UUID> {
-
-	private UUID id;
-
-	public UUID getId() {
-		return id;
-	}
-
-	public void setId(UUID id) {
-		this.id = id;
-	}
-
-	public UserQueryOld(DatabaseAccessLayer<UserEntity, UUID> databaseAccessLayer) {
-		super(databaseAccessLayer);
-	}
-
-	public UserQueryOld(DatabaseAccessLayer<UserEntity, UUID> databaseAccessLayer, List<String> selectionFields) {
-		super(databaseAccessLayer, selectionFields);
-	}
-
-	@Override
-	public QueryableList<UserEntity> getQuery() {
-		QueryableList<UserEntity> query = this.databaseAccessLayer.asQueryable();
-		if (this.id != null)
-			query.where((builder, root) -> builder.equal(root.get("id"), this.id));
-		return query;
-	}
-}

dmp-backend/web/src/main/java/eu/eudat/controllers/DMPs.java

@@ -17,6 +17,7 @@ import eu.eudat.logic.managers.DataManagementPlanManager;
 import eu.eudat.logic.proxy.config.configloaders.ConfigLoader;
 import eu.eudat.logic.services.ApiContext;
 import eu.eudat.logic.services.operations.DatabaseRepository;
+import eu.eudat.model.DmpUser;
 import eu.eudat.model.file.FileEnvelope;
 import eu.eudat.utilities.pdf.PDFUtils;
 import eu.eudat.models.data.datasetprofile.DatasetProfileListingModel;
@@ -27,7 +28,6 @@ import eu.eudat.models.data.helpers.common.DataTableData;
 import eu.eudat.models.data.helpers.responses.ResponseItem;
 import eu.eudat.models.data.listingmodels.DataManagementPlanListingModel;
 import eu.eudat.models.data.listingmodels.DataManagementPlanOverviewModel;
-import eu.eudat.models.data.listingmodels.UserInfoListingModel;
 import eu.eudat.models.data.listingmodels.VersionListingModel;
 import eu.eudat.query.DMPQuery;
 import eu.eudat.types.ApiMessageCode;
@@ -353,7 +353,7 @@ public class DMPs extends BaseController {
 
 
     @RequestMapping(method = RequestMethod.POST, value = {"/updateusers/{id}"})
-    public ResponseEntity<ResponseItem<DmpEntity>> updateUsers(@PathVariable String id, @RequestBody List<UserInfoListingModel> users) {
+    public ResponseEntity<ResponseItem<DmpEntity>> updateUsers(@PathVariable String id, @RequestBody List<DmpUser> users) {
         this.authorizationService.authorizeForce(Permission.AuthenticatedRole);
         
         try {

dmp-backend/web/src/main/java/eu/eudat/controllers/EmailMergeConfirmation.java

@@ -5,7 +5,6 @@ import eu.eudat.exceptions.emailconfirmation.HasConfirmedEmailException;
 import eu.eudat.exceptions.emailconfirmation.TokenExpiredException;
 import eu.eudat.logic.managers.MergeEmailConfirmationManager;
 import eu.eudat.models.data.helpers.responses.ResponseItem;
-import eu.eudat.models.data.userinfo.UserMergeRequestModel;
 import eu.eudat.types.ApiMessageCode;
 import gr.cite.commons.web.authz.service.AuthorizationService;
 import org.springframework.beans.factory.annotation.Autowired;
@@ -48,19 +47,19 @@ public class EmailMergeConfirmation {
 		}
 	}
 
-	@Transactional
+//	@Transactional
-	@RequestMapping(method = RequestMethod.POST, consumes = "application/json", produces = "application/json")
+//	@RequestMapping(method = RequestMethod.POST, consumes = "application/json", produces = "application/json")
-	public @ResponseBody
+//	public @ResponseBody
-	ResponseEntity sendConfirmatioEmail(@RequestBody UserMergeRequestModel requestModel) {
+//	ResponseEntity sendConfirmatioEmail(@RequestBody UserMergeRequestModel requestModel) {
-		this.authorizationService.authorizeForce(Permission.AuthenticatedRole);
+//		this.authorizationService.authorizeForce(Permission.AuthenticatedRole);
-		try {
+//		try {
-			this.emailConfirmationManager.sendConfirmationEmail(requestModel.getEmail(), requestModel.getUserId(), requestModel.getProvider());
+//			this.emailConfirmationManager.sendConfirmationEmail(requestModel.getEmail(), requestModel.getUserId(), requestModel.getProvider());
-			return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem().status(ApiMessageCode.SUCCESS_MESSAGE));
+//			return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem().status(ApiMessageCode.SUCCESS_MESSAGE));
-		} catch (Exception ex) {
+//		} catch (Exception ex) {
-			if (ex instanceof HasConfirmedEmailException) {
+//			if (ex instanceof HasConfirmedEmailException) {
-				return ResponseEntity.status(HttpStatus.FOUND).body(new ResponseItem().status(ApiMessageCode.WARN_MESSAGE));
+//				return ResponseEntity.status(HttpStatus.FOUND).body(new ResponseItem().status(ApiMessageCode.WARN_MESSAGE));
-			}
+//			}
-			return ResponseEntity.status(HttpStatus.BAD_REQUEST).body(new ResponseItem().status(ApiMessageCode.NO_MESSAGE));
+//			return ResponseEntity.status(HttpStatus.BAD_REQUEST).body(new ResponseItem().status(ApiMessageCode.NO_MESSAGE));
-		}
+//		}
-	}
+//	}
 }

dmp-backend/web/src/main/java/eu/eudat/controllers/EmailUnlinkConfirmation.java

@@ -5,7 +5,6 @@ import eu.eudat.exceptions.emailconfirmation.HasConfirmedEmailException;
 import eu.eudat.exceptions.emailconfirmation.TokenExpiredException;
 import eu.eudat.logic.managers.UnlinkEmailConfirmationManager;
 import eu.eudat.models.data.helpers.responses.ResponseItem;
-import eu.eudat.models.data.userinfo.UserUnlinkRequestModel;
 import eu.eudat.types.ApiMessageCode;
 import gr.cite.commons.web.authz.service.AuthorizationService;
 import org.springframework.beans.factory.annotation.Autowired;
@@ -48,16 +47,16 @@ public class EmailUnlinkConfirmation {
         }
     }
 
-    @Transactional
+//    @Transactional
-    @RequestMapping(method = RequestMethod.POST, consumes = "application/json", produces = "application/json")
+//    @RequestMapping(method = RequestMethod.POST, consumes = "application/json", produces = "application/json")
-    public @ResponseBody
+//    public @ResponseBody
-    ResponseEntity<ResponseItem> sendUnlinkConfirmationEmail(@RequestBody UserUnlinkRequestModel requestModel) {
+//    ResponseEntity<ResponseItem> sendUnlinkConfirmationEmail(@RequestBody UserUnlinkRequestModel requestModel) {
-        this.authorizationService.authorizeForce(Permission.AuthenticatedRole);
+//        this.authorizationService.authorizeForce(Permission.AuthenticatedRole);
-        try {
+//        try {
-            this.unlinkEmailConfirmationManager.sendConfirmationEmail(requestModel.getEmail(), requestModel.getUserId(), requestModel.getProvider());
+//            this.unlinkEmailConfirmationManager.sendConfirmationEmail(requestModel.getEmail(), requestModel.getUserId(), requestModel.getProvider());
-            return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem().status(ApiMessageCode.SUCCESS_MESSAGE));
+//            return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem().status(ApiMessageCode.SUCCESS_MESSAGE));
-        } catch (Exception ex) {
+//        } catch (Exception ex) {
-            return ResponseEntity.status(HttpStatus.BAD_REQUEST).body(new ResponseItem().status(ApiMessageCode.NO_MESSAGE).message("Could not send unlink email."));
+//            return ResponseEntity.status(HttpStatus.BAD_REQUEST).body(new ResponseItem().status(ApiMessageCode.NO_MESSAGE).message("Could not send unlink email."));
-        }
+//        }
-    }
+//    }
 }

dmp-backend/web/src/main/java/eu/eudat/controllers/UserInvitationController.java

@@ -1,12 +1,10 @@
 package eu.eudat.controllers;
 
 import eu.eudat.authorization.Permission;
-import eu.eudat.data.query.items.item.userinfo.UserInfoRequestItem;
 import eu.eudat.logic.managers.InvitationsManager;
 import eu.eudat.logic.services.ApiContext;
 import eu.eudat.models.data.helpers.responses.ResponseItem;
 import eu.eudat.models.data.invitation.Invitation;
-import eu.eudat.models.data.userinfo.UserInfoInvitationModel;
 import eu.eudat.types.ApiMessageCode;
 import gr.cite.commons.web.authz.service.AuthorizationService;
 import org.springframework.beans.factory.annotation.Autowired;
@@ -57,14 +55,14 @@ public class UserInvitationController extends BaseController {
         return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<UUID>().status(ApiMessageCode.SUCCESS_MESSAGE).payload(dmpId));
     }
 
-    @RequestMapping(method = RequestMethod.POST, value = {"/getUsers"}, consumes = "application/json", produces = "application/json")
+//    @RequestMapping(method = RequestMethod.POST, value = {"/getUsers"}, consumes = "application/json", produces = "application/json")
-    public @ResponseBody
+//    public @ResponseBody
-//    ResponseEntity<ResponseItem<List<UserInfoInvitationModel>>> getUsers() throws IllegalAccessException, InstantiationException {
+////    ResponseEntity<ResponseItem<List<UserInfoInvitationModel>>> getUsers() throws IllegalAccessException, InstantiationException {
-    ResponseEntity<ResponseItem<List<UserInfoInvitationModel>>> getUsers(@RequestBody UserInfoRequestItem userInfoRequestItem) throws IllegalAccessException, InstantiationException, InvalidApplicationException {
+//    ResponseEntity<ResponseItem<List<UserInfoInvitationModel>>> getUsers(@RequestBody UserInfoRequestItem userInfoRequestItem) throws IllegalAccessException, InstantiationException, InvalidApplicationException {
-//        List<UserInfoInvitationModel> users = invitationsManager.getUsers(principal);
+////        List<UserInfoInvitationModel> users = invitationsManager.getUsers(principal);
-        this.authorizationService.authorizeForce(Permission.AuthenticatedRole);
+//        this.authorizationService.authorizeForce(Permission.AuthenticatedRole);
-
+//
-        List<UserInfoInvitationModel> users = invitationsManager.getUsersWithCriteria(userInfoRequestItem);
+//        List<UserInfoInvitationModel> users = invitationsManager.getUsersWithCriteria(userInfoRequestItem);
-        return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<List<UserInfoInvitationModel>>().status(ApiMessageCode.SUCCESS_MESSAGE).payload(users));
+//        return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<List<UserInfoInvitationModel>>().status(ApiMessageCode.SUCCESS_MESSAGE).payload(users));
-    }
+//    }
 }

dmp-backend/web/src/main/java/eu/eudat/controllers/v2/ReferenceTypeController.java

@@ -107,6 +107,25 @@ public class ReferenceTypeController extends BaseController {
         return model;
     }
 
+    @GetMapping("code/{code}")
+    public ReferenceType get(@PathVariable("code") String code, FieldSet fieldSet) throws MyApplicationException, MyForbiddenException, MyNotFoundException {
+        logger.debug(new MapLogEntry("retrieving" + ReferenceType.class.getSimpleName()).And("code", code).And("fields", fieldSet));
+
+        this.censorFactory.censor(ReferenceTypeCensor.class).censor(fieldSet, null);
+
+        ReferenceTypeQuery query = this.queryFactory.query(ReferenceTypeQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).codes(code);
+        ReferenceType model = this.builderFactory.builder(ReferenceTypeBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(fieldSet, query.firstAs(fieldSet));
+        if (model == null)
+            throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{code, Reference.class.getSimpleName()}, LocaleContextHolder.getLocale()));
+
+        this.auditService.track(AuditableAction.ReferenceType_Lookup, Map.ofEntries(
+                new AbstractMap.SimpleEntry<String, Object>("code", code),
+                new AbstractMap.SimpleEntry<String, Object>("fields", fieldSet)
+        ));
+
+        return model;
+    }
+
     @PostMapping("persist")
     @Transactional
     public ReferenceType persist(@MyValidate @RequestBody ReferenceTypePersist model, FieldSet fieldSet) throws MyApplicationException, MyForbiddenException, MyNotFoundException, InvalidApplicationException, JAXBException, JsonProcessingException, InvalidApplicationException {

dmp-backend/web/src/main/java/eu/eudat/criteria/DMPCriteria.java

@@ -143,7 +143,7 @@ public class DMPCriteria {
 		DMPQuery dmpQuery = new DMPQuery(dao.getDmpDao(), fields);
 		if (this.id != null) dmpQuery.setId(this.id.getValue());
 		if (this.grant != null) dmpQuery.setGrantQuery(this.grant.buildQuery(dao));
-		if (this.creator != null) dmpQuery.setUserQuery(this.creator.buildQuery(dao));
+//		if (this.creator != null) dmpQuery.setUserQuery(this.creator.buildQuery(dao));
 		if (this.dataset != null) dmpQuery.setDatasetQuery(this.dataset.buildQuery(dao));
 		return dmpQuery;
 	}

dmp-backend/web/src/main/java/eu/eudat/criteria/GrantCriteria.java

@@ -103,7 +103,7 @@ public class GrantCriteria {
 		List<String> fields = this.buildFields("");
 		GrantQuery query = new GrantQuery(dao.getGrantDao(), fields);
 		query.setId(this.id.getValue());
-		if (this.creator != null) query.setUserQuery(this.creator.buildQuery(dao));
+//		if (this.creator != null) query.setUserQuery(this.creator.buildQuery(dao));
 		return query;
 	}
 }

dmp-backend/web/src/main/java/eu/eudat/criteria/UserCriteria.java

@@ -7,7 +7,8 @@ import com.fasterxml.jackson.databind.ObjectReader;
 import com.fasterxml.jackson.databind.node.JsonNodeType;
 import eu.eudat.criteria.entities.Criteria;
 import eu.eudat.logic.services.operations.DatabaseRepository;
-import eu.eudat.query.UserQueryOld;
+import eu.eudat.model.User;
+import eu.eudat.query.UserQuery;
 
 import java.io.IOException;
 import java.util.*;
@@ -57,10 +58,10 @@ public class UserCriteria {
 		return new LinkedList<>(fields);
 	}
 
-	public UserQueryOld buildQuery(DatabaseRepository dao) {
+	public UserQuery buildQuery(DatabaseRepository dao) {
 		List<String> fields = this.buildFields("");
-		UserQueryOld query = new UserQueryOld(dao.getUserInfoDao(), fields);
+//		UserQuery query = new UserQuery(dao.getUserInfoDao(), fields);
-		if (this.id != null) query.setId(this.id.getValue());
+//		if (this.id != null) query.setId(this.id.getValue());
-		return query;
+		return null;
 	}
 }

dmp-backend/web/src/main/java/eu/eudat/logic/managers/ContactEmailManager.java

@@ -7,6 +7,7 @@ import eu.eudat.model.UserContactInfo;
 import eu.eudat.models.data.ContactEmail.ContactEmailModel;
 import eu.eudat.models.data.ContactEmail.PublicContactEmailModel;
 import eu.eudat.query.UserContactInfoQuery;
+import eu.eudat.query.UserQuery;
 import eu.eudat.service.mail.SimpleMail;
 import gr.cite.tools.data.query.Ordering;
 import gr.cite.tools.data.query.QueryFactory;
@@ -34,7 +35,7 @@ public class ContactEmailManager {
 	}
 
 	public void sendContactEmail(ContactEmailModel contactEmailModel) throws MessagingException, InvalidApplicationException {
-		UserEntity user = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(this.userScope.getUserId());
+		UserEntity user = this.queryFactory.query(UserQuery.class).ids(this.userScope.getUserId()).first();
 		SimpleMail mail = new SimpleMail();
 		UserContactInfoQuery query = this.queryFactory.query(UserContactInfoQuery.class).userIds(user.getId());
 		query.setOrder(new Ordering().addAscending(UserContactInfo._ordinal));

dmp-backend/web/src/main/java/eu/eudat/logic/managers/DataManagementPlanManager.java

@@ -27,6 +27,7 @@ import eu.eudat.exceptions.security.ForbiddenException;
 import eu.eudat.exceptions.security.UnauthorisedException;
 import eu.eudat.logic.builders.entity.UserInfoBuilder;
 import eu.eudat.logic.proxy.config.configloaders.ConfigLoader;
+import eu.eudat.model.DmpUser;
 import eu.eudat.model.mapper.deposit.DMPToDepositMapper;
 import eu.eudat.logic.services.ApiContext;
 import eu.eudat.logic.services.forms.VisibilityRuleService;
@@ -34,7 +35,7 @@ import eu.eudat.logic.services.forms.VisibilityRuleServiceImpl;
 import eu.eudat.logic.services.operations.DatabaseRepository;
 import eu.eudat.commons.types.xml.XmlBuilder;
 import eu.eudat.model.file.FileEnvelope;
-import eu.eudat.query.DmpDescriptionTemplateQuery;
+import eu.eudat.query.*;
 import eu.eudat.utilities.pdf.PDFUtils;
 import eu.eudat.logic.utilities.documents.types.ParagraphStyle;
 import eu.eudat.logic.utilities.documents.word.WordBuilder;
@@ -55,9 +56,6 @@ import eu.eudat.models.data.helpers.common.DataTableData;
 import eu.eudat.models.data.listingmodels.*;
 import eu.eudat.models.data.project.ProjectDMPEditorModel;
 import eu.eudat.models.data.user.composite.PagedDatasetProfile;
-import eu.eudat.models.data.userinfo.UserListingModel;
-import eu.eudat.query.DescriptionTemplateQuery;
-import eu.eudat.query.DmpBlueprintQuery;
 import eu.eudat.queryable.QueryableList;
 import eu.eudat.service.dmpblueprint.DmpBlueprintService;
 import eu.eudat.types.MetricNames;
@@ -275,7 +273,7 @@ public class DataManagementPlanManager {
         QueryableList<DescriptionEntity> datasetItems = apiContext.getOperationsContext().getDatabaseRepository().getDatasetDao().getWithCriteria(datasetCriteria)
                 .orderBy((builder, root) -> builder.desc(root.get("modified")));
         if (principal != null) {
-            UserEntity userInfo = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(principal);
+            UserEntity userInfo = this.queryFactory.query(UserQuery.class).ids(principal).first();
             List<Integer> roles = new ArrayList<>();
             roles.add(0);
             roles.add(1);
@@ -505,7 +503,7 @@ public class DataManagementPlanManager {
         if (newDmp.getStatus().equals(DmpStatus.Finalized)) {
             checkDmpValidationRules(newDmp);
         }
-        UserEntity user = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(this.userScope.getUserId());
+        UserEntity user = this.queryFactory.query(UserQuery.class).ids(this.userScope.getUserId()).first();
         newDmp.setCreatorId(user.getId());
         DmpBlueprintEntity dmpBlueprint = this.queryFactory.query(DmpBlueprintQuery.class).ids(newDmp.getBlueprintId()).first();
 
@@ -535,15 +533,14 @@ public class DataManagementPlanManager {
 
         newDmp.setCreatedAt(dmp.getCreatedAt() == null ? Instant.now() : dmp.getCreatedAt());
         DmpEntity finalNewDmp = newDmp;
-        this.databaseRepository.getUserDmpDao().asQueryable().where((builder, root) -> root.get("dmp").in(finalNewDmp.getId())).toList();
+        if (this.queryFactory.query(DmpUserQuery.class).dmpIds(finalNewDmp.getId()).collect() != null &&
-        if (this.databaseRepository.getUserDmpDao().asQueryable().where((builder, root) -> root.get("dmp").in(finalNewDmp.getId())).toList()!= null &&
+                this.queryFactory.query(DmpUserQuery.class).dmpIds(finalNewDmp.getId()).collect().stream().filter(userInfo -> this.userScope.getUserIdSafe().equals(userInfo.getUserId()))
-                this.databaseRepository.getUserDmpDao().asQueryable().where((builder, root) -> root.get("dmp").in(finalNewDmp.getId())).toList().stream().filter(userInfo -> this.userScope.getUserIdSafe().equals(userInfo.getUserId()))
                                               .collect(Collectors.toList()).size() == 0) {
-            List<DmpUserEntity> userDMPList = new ArrayList<>(this.databaseRepository.getUserDmpDao().asQueryable().where((builder, root) -> root.get("dmp").in(finalNewDmp.getId())).toList());
+            List<DmpUserEntity> userDMPList = new ArrayList<>(this.queryFactory.query(DmpUserQuery.class).dmpIds(finalNewDmp.getId()).collect());
-            for (UserInfoListingModel userInfoListingModel : dataManagementPlan.getUsers()) {
+            for (DmpUser userInfoListingModel : dataManagementPlan.getUsers()) {
                 for (DmpUserEntity userDMP : userDMPList) {
                     if (!(userDMP.getUserId().equals(userInfoListingModel.getId()))) {
-                        apiContext.getOperationsContext().getDatabaseRepository().getUserDmpDao().delete(userDMP);
+//                        apiContext.getOperationsContext().getDatabaseRepository().getUserDmpDao().delete(userDMP);
                     }
                 }
             }
@@ -581,9 +578,9 @@ public class DataManagementPlanManager {
 
         if (dataManagementPlan.getUsers() != null && !dataManagementPlan.getUsers().isEmpty()) {
             clearUsers(newDmp);
-            for (UserInfoListingModel userListing : dataManagementPlan.getUsers()) {
+            for (DmpUser userListing : dataManagementPlan.getUsers()) {
-                UserEntity tempUser = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(userListing.getId());
+                UserEntity tempUser = this.queryFactory.query(UserQuery.class).ids(userListing.getId()).first();
-                assignUser(dmp, tempUser, DmpUserRole.of((short)userListing.getRole()));
+                assignUser(dmp, tempUser, userListing.getRole());
             }
         }
 
@@ -621,8 +618,8 @@ public class DataManagementPlanManager {
             }
         }
 
-        if (dataManagementPlan.getAssociatedUsers().size() == 0)
+//        if (dataManagementPlan.getAssociatedUsers().size() == 0)
-            assignUser(newDmp, user);
+//            assignUser(newDmp, user);
 
         UUID dmpId = newDmp.getId();
         //TODO
@@ -668,7 +665,7 @@ public class DataManagementPlanManager {
         if (tempDMP.getStatus().equals(DmpStatus.Finalized)) {
             checkDmpValidationRules(tempDMP);
         }
-        UserEntity user = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(this.userScope.getUserId());
+        UserEntity user = this.queryFactory.query(UserQuery.class).ids(this.userScope.getUserId()).first();
         DmpBlueprintEntity dmpBlueprint = this.queryFactory.query(DmpBlueprintQuery.class).ids(tempDMP.getBlueprintId()).first();
         
         if(this.dmpBlueprintService.fieldInBlueprint(dmpBlueprint, DmpBlueprintSystemFieldType.Organizations)) {
@@ -782,14 +779,13 @@ public class DataManagementPlanManager {
 
             copyDatasets(newDmp, databaseRepository.getDatasetDao());
 
-           databaseRepository
+            this.queryFactory.query(DmpUserQuery.class).dmpIds(oldDmp.getId()).collect()
-                    .getUserDmpDao().asQueryable().where((builder, root) -> builder.equal(root.get("dmp").get("id"), oldDmp.getId()))
+                    .stream().forEach(userDMP -> {
-                    .toList().stream().forEach(userDMP -> {
                         DmpUserEntity temp = new DmpUserEntity();
                         temp.setUserId(userDMP.getUserId());
                         temp.setRole(userDMP.getRole());
                         temp.setDmp(newDmp.getId());
-                        apiContext.getOperationsContext().getDatabaseRepository().getUserDmpDao().createOrUpdate(temp);
+//                        apiContext.getOperationsContext().getDatabaseRepository().getUserDmpDao().createOrUpdate(temp);
                     });
 
            //TODO
@@ -1230,7 +1226,7 @@ public class DataManagementPlanManager {
 //                }
 //            });
         });
-        UserEntity user = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(this.userScope.getUserId());
+        UserEntity user = this.queryFactory.query(UserQuery.class).ids(this.userScope.getUserId()).first(); 
         sendNotification(dmp, user, NotificationType.DMP_PUBLISH);
     }
 
@@ -1316,7 +1312,7 @@ public class DataManagementPlanManager {
         UUID dmpId = dmp.getId();
 //        dmp.setUsers(new HashSet<>(apiContext.getOperationsContext().getDatabaseRepository().getUserDmpDao().asQueryable().where((builder, root) -> builder.equal(root.get("dmp").get("id"), dmpId)).toList())); //TODO
         //this.updateIndex(dmp); //TODO
-        UserEntity user = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(this.userScope.getUserId());
+        UserEntity user = this.queryFactory.query(UserQuery.class).ids(this.userScope.getUserId()).first();
         sendNotification(dmp, user, NotificationType.DMP_FINALISED);
         metricsManager.decreaseValue(MetricNames.DMP, 1, MetricNames.DRAFT);
         metricsManager.increaseValue(MetricNames.DMP, 1, MetricNames.FINALIZED);
@@ -1344,14 +1340,14 @@ public class DataManagementPlanManager {
         metricsManager.increaseValue(MetricNames.DMP, 1, MetricNames.DRAFT);
     }
 
-    public void updateUsers(UUID id, List<UserInfoListingModel> users) throws Exception {
+    public void updateUsers(UUID id, List<DmpUser> users) throws Exception {
         DmpEntity dmp = this.apiContext.getOperationsContext().getDatabaseRepository().getDmpDao().find(id);
         if (!isUserOwnerOfDmp(dmp))
             throw new Exception("User does not have the privilege to do this action.");
         clearUsers(dmp);
-        for (UserInfoListingModel userListing : users) {
+        for (DmpUser userListing : users) {
-            UserEntity tempUser = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(userListing.getId());
+            UserEntity tempUser = this.queryFactory.query(UserQuery.class).ids(userListing.getId()).first();
-            assignUser(dmp, tempUser, DmpUserRole.of((short)userListing.getRole()));
+            assignUser(dmp, tempUser, userListing.getRole());
         }
 
     }
@@ -1824,14 +1820,14 @@ public class DataManagementPlanManager {
         Element dmpContactName = xmlDoc.createElement("name");
         Element dmpContactEmail = xmlDoc.createElement("email");
         if(dmp.getCreatorId() != null){
-            dmpContactName.setTextContent(this.databaseRepository.getUserInfoDao().find(dmp.getCreatorId()).getName());
+            dmpContactName.setTextContent(this.queryFactory.query(UserQuery.class).ids(dmp.getCreatorId()).first().getName());
             //TODO dmpContactEmail.setTextContent(this.databaseRepository.getUserInfoDao().find(dmp.getCreator()).getEmail());
         }
         else{
             Iterator<DmpUserEntity> users = new ArrayList<DmpUserEntity>().iterator(); //TODO dmp.getUsers().iterator();
             if(users.hasNext()){
                 DmpUserEntity creator = users.next();
-                dmpContactName.setTextContent(this.databaseRepository.getUserInfoDao().find(creator.getUserId()).getName());
+                dmpContactName.setTextContent(this.queryFactory.query(UserQuery.class).ids(creator.getUserId()).first().getName());
 //TODO .setTextContent(this.databaseRepository.getUserInfoDao().find(creator.getUser()).getEmail());
             }
         }
@@ -1846,7 +1842,7 @@ public class DataManagementPlanManager {
             Element dmpContributorName = xmlDoc.createElement("name");
             Element dmpContributorEmail= xmlDoc.createElement("email");
             DmpUserEntity contributor = users.next();
-            dmpContributorName.setTextContent(this.databaseRepository.getUserInfoDao().find(contributor.getUserId()).getName());
+            dmpContributorName.setTextContent(this.queryFactory.query(UserQuery.class).ids(contributor.getUserId()).first().getName());
             //TODO dmpContributorEmail.setTextContent(this.databaseRepository.getUserInfoDao().find(contributor.getUser()).getEmail());
             dmpContributorElement.appendChild(dmpContributorName);
             dmpContributorElement.appendChild(dmpContributorEmail);
@@ -2245,7 +2241,7 @@ public class DataManagementPlanManager {
                 researchers.add(researcher);
             }
 
-            List<UserListingModel> associatedUsers = new LinkedList<>();
+            //List<UserListingModel> associatedUsers = new LinkedList<>();
             List<DynamicFieldWithValue> dynamicFields = new LinkedList<>();
 
             // Sets properties.
@@ -2254,7 +2250,7 @@ public class DataManagementPlanManager {
             dm.setProfiles(associatedProfiles);
             dm.setOrganisations(organisations);  // Sets organisations property.
             dm.setResearchers(researchers);  // Sets researchers property.
-            dm.setAssociatedUsers(associatedUsers);  // Sets associatedUsers property.
+            //dm.setAssociatedUsers(associatedUsers);  // Sets associatedUsers property.
             dm.setDynamicFields(dynamicFields);  // Sets dynamicFields property.
             //dm.setDefinition(dmpProfile);
             //ObjectMapper mapper = new ObjectMapper();
@@ -2328,7 +2324,7 @@ public class DataManagementPlanManager {
         for (MultipartFile file: files) {
             DmpEntity dmp = rdaManager.convertToEntity(new String(file.getBytes(), "UTF-8"), profiles);
             dmp.setLabel(file.getOriginalFilename());
-            UserEntity me = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(this.userScope.getUserId());
+            UserEntity me = this.queryFactory.query(UserQuery.class).ids(dmp.getCreatorId()).first();
             dmp.setUpdatedAt(Instant.now());
             dmp.setCreatorId(me.getId());
             //TODO
@@ -2410,12 +2406,12 @@ public class DataManagementPlanManager {
         userDMP.setDmp(dmp.getId());
         userDMP.setUserId(userInfo.getId());
         userDMP.setRole(role);
-        databaseRepository.getUserDmpDao().createOrUpdate(userDMP);
+//        databaseRepository.getUserDmpDao().createOrUpdate(userDMP);
     }
 
     private void clearUsers(DmpEntity dmp) throws InvalidApplicationException {
-        List<DmpUserEntity> userDMPs = apiContext.getOperationsContext().getDatabaseRepository().getUserDmpDao().asQueryable().where(((builder, root) -> builder.equal(root.get("dmp").get("id"), dmp.getId()))).toList();
+        List<DmpUserEntity> userDMPs = this.queryFactory.query(DmpUserQuery.class).dmpIds(dmp.getId()).collect();
-        userDMPs.forEach(userDMP -> apiContext.getOperationsContext().getDatabaseRepository().getUserDmpDao().delete(userDMP));
+//        userDMPs.forEach(userDMP -> apiContext.getOperationsContext().getDatabaseRepository().getUserDmpDao().delete(userDMP));
     }
 
     private void assignGrandUserIfInternal(DmpEntity dmp, UserEntity user) {
@@ -2681,7 +2677,7 @@ public class DataManagementPlanManager {
     * */
 
     private void sendNotification(DmpEntity dmp, UserEntity user, NotificationType notificationType) throws InvalidApplicationException {
-        List<DmpUserEntity> userDMPS = databaseRepository.getUserDmpDao().asQueryable().where(((builder, root) -> builder.equal(root.get("dmp").get("id"), dmp.getId()))).toList();
+        List<DmpUserEntity> userDMPS = this.queryFactory.query(DmpUserQuery.class).dmpIds(dmp.getId()).collect();
         for (DmpUserEntity userDMP : userDMPS) {
             if (!userDMP.getUserId().equals(user.getId())) {
                 Notification notification = new Notification();

dmp-backend/web/src/main/java/eu/eudat/logic/managers/DatasetManager.java

@@ -51,6 +51,7 @@ import eu.eudat.models.data.listingmodels.DatasetListingModel;
 import eu.eudat.models.data.user.composite.PagedDatasetProfile;
 import eu.eudat.query.DescriptionTemplateQuery;
 import eu.eudat.query.DmpDescriptionTemplateQuery;
+import eu.eudat.query.DmpUserQuery;
 import eu.eudat.query.UserContactInfoQuery;
 import eu.eudat.queryable.QueryableList;
 import eu.eudat.types.MetricNames;
@@ -728,7 +729,7 @@ public class DatasetManager {
     }
 
     private void sendNotification(DescriptionEntity descriptionEntity, DmpEntity dmp, UserEntity user, NotificationType notificationType) throws InvalidApplicationException {
-        List<DmpUserEntity> userDMPS = databaseRepository.getUserDmpDao().asQueryable().where(((builder, root) -> builder.equal(root.get("dmp").get("id"), dmp.getId()))).toList();
+        List<DmpUserEntity> userDMPS = this.queryFactory.query(DmpUserQuery.class).dmpIds(dmp.getId()).collect();
         for (DmpUserEntity userDMP : userDMPS) {
             if (!userDMP.getUserId().equals(user.getId())) {
                 Notification notification = new Notification();

dmp-backend/web/src/main/java/eu/eudat/logic/managers/EmailConfirmationManager.java

@@ -1,13 +1,14 @@
 package eu.eudat.logic.managers;
 
 import eu.eudat.commons.scope.user.UserScope;
-import eu.eudat.data.UserCredentialEntity;
 import eu.eudat.data.old.EmailConfirmation;
 import eu.eudat.data.UserEntity;
 import eu.eudat.exceptions.emailconfirmation.HasConfirmedEmailException;
 import eu.eudat.exceptions.emailconfirmation.TokenExpiredException;
 import eu.eudat.logic.services.ApiContext;
 import eu.eudat.logic.services.operations.DatabaseRepository;
+import eu.eudat.query.UserQuery;
+import gr.cite.tools.data.query.QueryFactory;
 import org.springframework.beans.factory.annotation.Autowired;
 import org.springframework.stereotype.Component;
 
@@ -20,12 +21,14 @@ public class EmailConfirmationManager {
 	private ApiContext apiContext;
 	private DatabaseRepository databaseRepository;
 	private final UserScope userScope;
+	private final QueryFactory queryFactory;
 
 	@Autowired
-	public EmailConfirmationManager(ApiContext apiContext, UserScope userScope) {
+	public EmailConfirmationManager(ApiContext apiContext, UserScope userScope, QueryFactory queryFactory) {
 		this.apiContext = apiContext;
 		this.databaseRepository = apiContext.getOperationsContext().getDatabaseRepository();
 		this.userScope = userScope;
+		this.queryFactory = queryFactory;
 	}
 
 	public void confirmEmail(String token) throws TokenExpiredException, HasConfirmedEmailException, InvalidApplicationException {
@@ -33,8 +36,7 @@ public class EmailConfirmationManager {
 				.getDatabaseRepository().getLoginConfirmationEmailDao().asQueryable()
 				.where((builder, root) -> builder.equal(root.get("token"), UUID.fromString(token))).getSingle();
 
-		UserEntity user = databaseRepository.getUserInfoDao().asQueryable()
+		UserEntity user = this.queryFactory.query(UserQuery.class).ids(loginConfirmationEmail.getUserId()).first();
-				.where((builder, root) -> builder.equal(root.get("id"), loginConfirmationEmail.getUserId())).getSingle();
 
 //		if (user.getEmail() != null) //TODO
 //			throw new HasConfirmedEmailException("User already has confirmed his Email.");
@@ -45,12 +47,12 @@ public class EmailConfirmationManager {
 		loginConfirmationEmail.setIsConfirmed(true);
 
 		// Checks if mail is used by another user. If it is, merges the new the old.
-		Long existingUsers = databaseRepository.getUserInfoDao().asQueryable().where((builder, root) -> builder.equal(root.get("email"), loginConfirmationEmail.getEmail())).count();
+		Long existingUsers = this.queryFactory.query(UserQuery.class).emails(loginConfirmationEmail.getEmail()).count();
 		if (existingUsers > 0) {
-			UserCredentialEntity credential = databaseRepository.getCredentialDao().asQueryable().where((builder, root) -> builder.equal(root.get("userId"), user.getId())).getSingle();
+//			UserCredentialEntity credential = databaseRepository.getCredentialDao().asQueryable().where((builder, root) -> builder.equal(root.get("userId"), user.getId())).getSingle();
 //			credential.setEmail(loginConfirmationEmail.getEmail()); //TODO
-			databaseRepository.getCredentialDao().createOrUpdate(credential);
+//			databaseRepository.getCredentialDao().createOrUpdate(credential);
-			UserEntity oldUser = databaseRepository.getUserInfoDao().asQueryable().where((builder, root) -> builder.equal(root.get("email"), loginConfirmationEmail.getEmail())).getSingle();
+			UserEntity oldUser = this.queryFactory.query(UserQuery.class).emails(loginConfirmationEmail.getEmail()).first();
 			mergeNewUserToOld(user, oldUser);
 //			expireUserToken(user); //TODO: Authn
 			databaseRepository.getLoginConfirmationEmailDao().createOrUpdate(loginConfirmationEmail);
@@ -58,9 +60,9 @@ public class EmailConfirmationManager {
 		}
 
 //		user.setEmail(loginConfirmationEmail.getEmail()); //TODO
-		databaseRepository.getUserInfoDao().createOrUpdate(user);
+//		databaseRepository.getUserInfoDao().createOrUpdate(user);
-		UserCredentialEntity credential = databaseRepository.getCredentialDao().asQueryable()
+//		UserCredentialEntity credential = databaseRepository.getCredentialDao().asQueryable()
-				.where((builder, root) -> builder.equal(root.get("userId"), user.getId())).getSingle();
+//				.where((builder, root) -> builder.equal(root.get("userId"), user.getId())).getSingle();
 //		if(credential.getEmail() == null){//TODO
 //			credential.setEmail(user.getEmail());
 //			databaseRepository.getCredentialDao().createOrUpdate(credential);
@@ -69,7 +71,7 @@ public class EmailConfirmationManager {
 	}
 
 	public void sendConfirmationEmail(String email) throws HasConfirmedEmailException, InvalidApplicationException {
-		UserEntity user = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(this.userScope.getUserId());
+		UserEntity user = this.queryFactory.query(UserQuery.class).ids(this.userScope.getUserId()).first();
 //		if (user.getEmail() != null) //TODO
 //			throw new HasConfirmedEmailException("User already has confirmed his Email.");
 
@@ -82,8 +84,8 @@ public class EmailConfirmationManager {
 	}
 
 	private void mergeNewUserToOld(UserEntity newUser, UserEntity oldUser) throws InvalidApplicationException {
-		UserCredentialEntity credential = databaseRepository.getCredentialDao().asQueryable().where((builder, root) -> builder.equal(root.get("userId"), newUser.getId())).getSingle();
+//		UserCredentialEntity credential = databaseRepository.getCredentialDao().asQueryable().where((builder, root) -> builder.equal(root.get("userId"), newUser.getId())).getSingle();
-		credential.setUserId(oldUser.getId());
+//		credential.setUserId(oldUser.getId());
-		databaseRepository.getCredentialDao().createOrUpdate(credential);
+//		databaseRepository.getCredentialDao().createOrUpdate(credential);
 	}
 }

dmp-backend/web/src/main/java/eu/eudat/logic/managers/InvitationsManager.java

@@ -5,11 +5,10 @@ import eu.eudat.commons.scope.user.UserScope;
 import eu.eudat.data.DmpEntity;
 import eu.eudat.data.DmpUserEntity;
 import eu.eudat.data.UserEntity;
-import eu.eudat.data.query.items.item.userinfo.UserInfoRequestItem;
 import eu.eudat.exceptions.security.UnauthorisedException;
 import eu.eudat.logic.services.ApiContext;
+import eu.eudat.model.User;
 import eu.eudat.models.data.invitation.Invitation;
-import eu.eudat.models.data.userinfo.UserInfoInvitationModel;
 import org.springframework.beans.factory.annotation.Autowired;
 import org.springframework.stereotype.Component;
 
@@ -49,8 +48,8 @@ public class InvitationsManager {
 				item.setId(existingUser.getId());
 			}
         });
-        List<UserInfoInvitationModel> alreadySignedInUsers = invitation.getUsers().stream().filter(item -> item.getId() != null).collect(Collectors.toList());
+        List<User> alreadySignedInUsers = invitation.getUsers().stream().filter(item -> item.getId() != null).collect(Collectors.toList());
-        List<UserEntity> alreadySignedInUsersEntities = alreadySignedInUsers.stream().map(UserInfoInvitationModel::toDataModel).collect(Collectors.toList());
+        List<UserEntity> alreadySignedInUsersEntities = new ArrayList<>(); //alreadySignedInUsers.stream().map(User::toDataModel).collect(Collectors.toList());
         List<DmpUserEntity> userInfoToUserDmp = new LinkedList<>();
         for (UserEntity userInfo : alreadySignedInUsersEntities) {
             DmpUserEntity userDMP = new DmpUserEntity();
@@ -65,11 +64,11 @@ public class InvitationsManager {
             }*/
         }
         DmpEntity dataManagementPlan = apiContext.getOperationsContext().getDatabaseRepository().getDmpDao().find(invitation.getDataManagementPlan());
-        apiContext.getUtilitiesService().getInvitationService().createInvitations(apiContext.getOperationsContext().getDatabaseRepository().getInvitationDao(), apiContext.getUtilitiesService().getMailService(), invitation.getUsers().stream().map(UserInfoInvitationModel::toDataModel).collect(Collectors.toList()), dataManagementPlan, invitation.getRole(), principalUser);
+//        apiContext.getUtilitiesService().getInvitationService().createInvitations(apiContext.getOperationsContext().getDatabaseRepository().getInvitationDao(), apiContext.getUtilitiesService().getMailService(), invitation.getUsers().stream().map(UserInfoInvitationModel::toDataModel).collect(Collectors.toList()), dataManagementPlan, invitation.getRole(), principalUser);
         apiContext.getUtilitiesService().getInvitationService().assignToDmp(apiContext.getOperationsContext().getDatabaseRepository().getDmpDao(), userInfoToUserDmp, dataManagementPlan);
     }
 
-    public List<UserInfoInvitationModel> getUsers() throws InstantiationException, IllegalAccessException, InvalidApplicationException {
+    public List<User> getUsers() throws InstantiationException, IllegalAccessException, InvalidApplicationException {
         /*UserInfo principalUser = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(principal.getId());
         List<UserInfo> users = apiContext.getOperationsContext().getDatabaseRepository().getUserAssociationDao().getAssociated(principalUser).stream().map(userAssociation -> {
             if (userAssociation.getFirstUser().getId().equals(principal.getId())) {
@@ -85,28 +84,28 @@ public class InvitationsManager {
 //                                                 .where(((builder, root) -> builder.notEqual(root.get("isActive"), IsActive.Inactive))), this.userScope.getUserId(), Stream.of(0, 1).collect(Collectors.toList()))
 //                                         .toList().stream().map(DmpEntity::getUsers).flatMap(Collection::stream).map(DmpUser::getUser)
 //                                         .filter(userInfo -> !userInfo.getId().equals(this.userScope.getUserIdSafe())).filter(StreamDistinctBy.distinctByKey(UserInfo::getId)).collect(Collectors.toList());
-        List<UserInfoInvitationModel> userModels = users.stream().map(userInfo -> new UserInfoInvitationModel().fromDataModel(userInfo)).collect(Collectors.toList());
+        List<User> userModels = new ArrayList<>(); //users.stream().map(userInfo -> new User().fromDataModel(userInfo)).collect(Collectors.toList());
         return userModels;
     }
 
-    public List<UserInfoInvitationModel> getUsersWithCriteria(UserInfoRequestItem userInfoRequestItem) throws IllegalAccessException, InstantiationException, InvalidApplicationException {
+//    public List<UserInfoInvitationModel> getUsersWithCriteria(UserInfoRequestItem userInfoRequestItem) throws IllegalAccessException, InstantiationException, InvalidApplicationException {
-        //TODO
+//        //TODO
-//        List<UserInfo> users = apiContext.getOperationsContext().getDatabaseRepository().getDmpDao()
+////        List<UserInfo> users = apiContext.getOperationsContext().getDatabaseRepository().getDmpDao()
-//                .getAuthenticated(apiContext.getOperationsContext().getDatabaseRepository().getDmpDao().asQueryable()
+////                .getAuthenticated(apiContext.getOperationsContext().getDatabaseRepository().getDmpDao().asQueryable()
-//                        .where(((builder, root) ->
+////                        .where(((builder, root) ->
-//                                builder.notEqual(root.get("status"), DMP.DMPStatus.DELETED.getValue()))), this.userScope.getUserId(), Stream.of(0, 1).collect(Collectors.toList()))
+////                                builder.notEqual(root.get("status"), DMP.DMPStatus.DELETED.getValue()))), this.userScope.getUserId(), Stream.of(0, 1).collect(Collectors.toList()))
-//                .toList().stream().map(DMP::getUsers).flatMap(Collection::stream).map(UserDMP::getUser)
+////                .toList().stream().map(DMP::getUsers).flatMap(Collection::stream).map(UserDMP::getUser)
-//                .filter(userInfo -> !userInfo.getId().equals(this.userScope.getUserIdSafe())).filter(StreamDistinctBy.distinctByKey(UserInfo::getId))
+////                .filter(userInfo -> !userInfo.getId().equals(this.userScope.getUserIdSafe())).filter(StreamDistinctBy.distinctByKey(UserInfo::getId))
-//                .filter(userInfo -> (userInfoRequestItem == null || userInfoRequestItem.getCriteria() == null || userInfoRequestItem.getCriteria().getLike() == null
+////                .filter(userInfo -> (userInfoRequestItem == null || userInfoRequestItem.getCriteria() == null || userInfoRequestItem.getCriteria().getLike() == null
-//                        || userInfo.getName().toLowerCase().contains(userInfoRequestItem.getCriteria().getLike().toLowerCase())
+////                        || userInfo.getName().toLowerCase().contains(userInfoRequestItem.getCriteria().getLike().toLowerCase())
-//                        || (userInfo.getEmail().toLowerCase().contains(userInfoRequestItem.getCriteria().getLike().toLowerCase()))))
+////                        || (userInfo.getEmail().toLowerCase().contains(userInfoRequestItem.getCriteria().getLike().toLowerCase()))))
-//                .collect(Collectors.toList());
+////                .collect(Collectors.toList());
-////                                .where((builder, root) -> builder.like(builder.upper(root.get("name")), "%" + userInfoRequestItem.getCriteria().getLike().toUpperCase() + "%"))
+//////                                .where((builder, root) -> builder.like(builder.upper(root.get("name")), "%" + userInfoRequestItem.getCriteria().getLike().toUpperCase() + "%"))
-//
+////
-//        List<UserInfoInvitationModel> userModels = users.stream().map(userInfo -> new UserInfoInvitationModel().fromDataModel(userInfo)).collect(Collectors.toList());
+////        List<UserInfoInvitationModel> userModels = users.stream().map(userInfo -> new UserInfoInvitationModel().fromDataModel(userInfo)).collect(Collectors.toList());
-//        return userModels;
+////        return userModels;
-        return new ArrayList<>();
+//        return new ArrayList<>();
-    }
+//    }
 
     public UUID assignUserAcceptedInvitation(UUID invitationID) throws UnauthorisedException, JAXBException, IOException, InvalidApplicationException {
         //TODO

dmp-backend/web/src/main/java/eu/eudat/logic/managers/MergeEmailConfirmationManager.java

@@ -2,7 +2,6 @@ package eu.eudat.logic.managers;
 
 import eu.eudat.commons.enums.IsActive;
 import eu.eudat.commons.scope.user.UserScope;
-import eu.eudat.data.UserCredentialEntity;
 import eu.eudat.data.DmpUserEntity;
 import eu.eudat.data.old.EmailConfirmation;
 import eu.eudat.data.UserEntity;
@@ -11,6 +10,8 @@ import eu.eudat.exceptions.emailconfirmation.TokenExpiredException;
 import eu.eudat.logic.services.ApiContext;
 import eu.eudat.logic.services.operations.DatabaseRepository;
 
+import eu.eudat.query.UserQuery;
+import gr.cite.tools.data.query.QueryFactory;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 import org.springframework.beans.factory.annotation.Autowired;
@@ -30,13 +31,15 @@ public class MergeEmailConfirmationManager {
 	private DatabaseRepository databaseRepository;
 //	private DmpRepository dmpRepository;
 	private final UserScope userScope;
+	private final QueryFactory queryFactory;
 
 	@Autowired
-	public MergeEmailConfirmationManager(ApiContext apiContext, UserScope userScope) {
+	public MergeEmailConfirmationManager(ApiContext apiContext, UserScope userScope, QueryFactory queryFactory) {
 		this.apiContext = apiContext;
 		this.databaseRepository = apiContext.getOperationsContext().getDatabaseRepository();
 //		this.dmpRepository = apiContext.getOperationsContext().getElasticRepository().getDmpRepository();
 		this.userScope = userScope;
+		this.queryFactory = queryFactory;
 	}
 
 	@Transactional
@@ -48,14 +51,12 @@ public class MergeEmailConfirmationManager {
 		if (loginConfirmationEmail.getExpiresAt().compareTo(new Date()) < 0)
 			throw new TokenExpiredException("Token has expired.");
 
-		UserEntity userToBeMerged = databaseRepository.getUserInfoDao().asQueryable()
+		UserEntity userToBeMerged = this.queryFactory.query(UserQuery.class).ids(loginConfirmationEmail.getUserId()).first();
-				.where((builder, root) -> builder.equal(root.get("id"), loginConfirmationEmail.getUserId())).getSingle();
 		String userToBeMergedEmail = ""; //TODO userToBeMerged.getEmail();
 		try {
 			Map<String, Object> map = new ObjectMapper().readValue(loginConfirmationEmail.getData(), HashMap.class);
 			UUID otherUserId = UUID.fromString((String) map.get("userId"));
-			UserEntity user = databaseRepository.getUserInfoDao().asQueryable()
+			UserEntity user = this.queryFactory.query(UserQuery.class).ids(otherUserId).first();
-					.where((builder, root) -> builder.equal(root.get("id"), otherUserId)).getSingle();
 
 			// Checks if mail is used by another user. If it is, merges the new the old.
 			mergeNewUserToOld(user, userToBeMerged, Integer.valueOf((String) map.get("provider")));
@@ -70,7 +71,7 @@ public class MergeEmailConfirmationManager {
 	}
 
 	public void sendConfirmationEmail(String email, UUID userId, Integer provider) throws HasConfirmedEmailException, InvalidApplicationException {
-		UserEntity user = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(this.userScope.getUserId());
+		UserEntity user = this.queryFactory.query(UserQuery.class).ids(this.userScope.getUserId()).first();
 //TODO 
 //		if (user.getEmail() != null && !user.getEmail().equals(email)) {
 //			apiContext.getUtilitiesService().getConfirmationEmailService().createMergeConfirmationEmail(
@@ -85,14 +86,14 @@ public class MergeEmailConfirmationManager {
 
 	@Transactional
 	private void mergeNewUserToOld(UserEntity newUser, UserEntity oldUser, Integer provider) throws InvalidApplicationException {
-		UserCredentialEntity credential = databaseRepository.getCredentialDao().asQueryable().where((builder, root) -> builder.and(builder.equal(root.get("userId"), oldUser.getId()), builder.equal(root.get("provider"), provider))).getSingle();
+//		UserCredentialEntity credential = databaseRepository.getCredentialDao().asQueryable().where((builder, root) -> builder.and(builder.equal(root.get("userId"), oldUser.getId()), builder.equal(root.get("provider"), provider))).getSingle();
-		credential.setUserId(newUser.getId());
+//		credential.setUserId(newUser.getId());
-		databaseRepository.getCredentialDao().createOrUpdate(credential);
+//		databaseRepository.getCredentialDao().createOrUpdate(credential);
-		List<DmpUserEntity> userDmps = databaseRepository.getUserDmpDao().asQueryable().where((builder, root) -> builder.equal(root.get("user"), oldUser)).toList();
+//		List<DmpUserEntity> userDmps = databaseRepository.getUserDmpDao().asQueryable().where((builder, root) -> builder.equal(root.get("user"), oldUser)).toList();
-		userDmps.forEach(userDmp -> {
+//		userDmps.forEach(userDmp -> {
-			userDmp.setUserId(newUser.getId());
+//			userDmp.setUserId(newUser.getId());
-			databaseRepository.getUserDmpDao().createOrUpdate(userDmp);
+//			databaseRepository.getUserDmpDao().createOrUpdate(userDmp);
-		});
+//		});
 		//TODO
 //		try {
 //			
@@ -129,12 +130,12 @@ public class MergeEmailConfirmationManager {
 //		}
 		oldUser.setIsActive(IsActive.Inactive);
 		//TODO oldUser.setEmail(null);
-		List<UserCredentialEntity> credentials = databaseRepository.getCredentialDao().asQueryable().where((builder, root) -> builder.equal(root.get("userId"), oldUser.getId())).toList();
+//		List<UserCredentialEntity> credentials = databaseRepository.getCredentialDao().asQueryable().where((builder, root) -> builder.equal(root.get("userId"), oldUser.getId())).toList();
-		credentials.forEach(cred -> {
+//		credentials.forEach(cred -> {
-			if (cred.getId() != credential.getId()) {
+//			if (cred.getId() != credential.getId()) {
-				databaseRepository.getCredentialDao().delete(cred);
+//				databaseRepository.getCredentialDao().delete(cred);
-			}
+//			}
-		});
+//		});
-		databaseRepository.getUserInfoDao().createOrUpdate(oldUser);
+//		databaseRepository.getUserInfoDao().createOrUpdate(oldUser);
 	}
 }

dmp-backend/web/src/main/java/eu/eudat/logic/managers/NotificationManager.java

@@ -6,8 +6,10 @@ import eu.eudat.data.UserEntity;
 import eu.eudat.commons.enums.old.notification.ActiveStatus;
 import eu.eudat.commons.enums.old.notification.NotifyState;
 import eu.eudat.logic.services.ApiContext;
+import eu.eudat.query.UserQuery;
 import eu.eudat.service.mail.MailService;
 import eu.eudat.service.mail.SimpleMail;
+import gr.cite.tools.data.query.QueryFactory;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 import org.springframework.beans.factory.annotation.Autowired;
@@ -26,12 +28,14 @@ public class NotificationManager {
 	private ApiContext apiContext;
 	private Environment environment;
 	private MailService mailService;
+	private final QueryFactory queryFactory;
 
 	@Autowired
-	public NotificationManager(ApiContext apiContext, Environment environment, MailService mailService) {
+	public NotificationManager(ApiContext apiContext, Environment environment, MailService mailService, QueryFactory queryFactory) {
 		this.apiContext = apiContext;
 		this.environment = environment;
 		this.mailService = mailService;
+		this.queryFactory = queryFactory;
 	}
 
 	@Transactional
@@ -52,7 +56,7 @@ public class NotificationManager {
 		notification.setUpdatedAt(new Date());
 		try {
 			Map<String, String> data = new ObjectMapper().readValue(notification.getData(), HashMap.class);
-			UserEntity userInfo = this.apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(UUID.fromString(data.get("userId")));
+			UserEntity userInfo = this.queryFactory.query(UserQuery.class).ids(UUID.fromString(data.get("userId"))).first();
 			String subjectTemplate = "";
 			String contentTemplate = "";
 

dmp-backend/web/src/main/java/eu/eudat/logic/managers/QuickWizardManager.java

@@ -9,6 +9,8 @@ import eu.eudat.data.old.*;
 import eu.eudat.logic.services.ApiContext;
 import eu.eudat.logic.services.operations.DatabaseRepository;
 import eu.eudat.models.data.dmp.DataManagementPlan;
+import eu.eudat.query.UserQuery;
+import gr.cite.tools.data.query.QueryFactory;
 import org.springframework.beans.factory.annotation.Autowired;
 import org.springframework.stereotype.Component;
 
@@ -23,12 +25,15 @@ public class QuickWizardManager {
     private DatabaseRepository databaseRepository;
     private DatasetManager datasetManager;
     
+    private final QueryFactory queryFactory;
+
     private final UserScope userScope;
     @Autowired
-    public QuickWizardManager(ApiContext apiContext, DatasetManager datasetManager, UserScope userScope) {
+    public QuickWizardManager(ApiContext apiContext, DatasetManager datasetManager, QueryFactory queryFactory, UserScope userScope) {
         this.apiContext = apiContext;
         this.databaseRepository = apiContext.getOperationsContext().getDatabaseRepository();
         this.datasetManager = datasetManager;
+        this.queryFactory = queryFactory;
         this.userScope = userScope;
     }
 
@@ -40,13 +45,13 @@ public class QuickWizardManager {
     public Grant createOrUpdate(eu.eudat.models.data.grant.Grant grant) throws ParseException, IOException, InvalidApplicationException {
         Grant grantEntity = grant.toDataModel();
         grantEntity.setType(Grant.GrantType.INTERNAL.getValue());
-        grantEntity.setCreationUser(databaseRepository.getUserInfoDao().find(this.userScope.getUserId()));
+        grantEntity.setCreationUser(this.queryFactory.query(UserQuery.class).ids(this.userScope.getUserId()).first());
         return databaseRepository.getGrantDao().createOrUpdate(grantEntity);
     }
 
     public Project createOrUpdate(eu.eudat.models.data.project.Project project) throws InvalidApplicationException {
         Project projectEntity = project.toDataModel();
-        projectEntity.setCreationUser(databaseRepository.getUserInfoDao().find(this.userScope.getUserId()));
+        projectEntity.setCreationUser(this.queryFactory.query(UserQuery.class).ids(this.userScope.getUserId()).first());
         return databaseRepository.getProjectDao().createOrUpdate(projectEntity);
     }
 
@@ -56,7 +61,7 @@ public class QuickWizardManager {
             //TODO
             //newDmp.getGrant().setFunder(funderEntity);
         }
-        UserEntity user = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(this.userScope.getUserId());
+        UserEntity user = this.queryFactory.query(UserQuery.class).ids(this.userScope.getUserId()).first();
         createFunderIfItDoesntExist(newDmp, user);
         createGrantIfItDoesntExist(newDmp, user);
         //TODO
@@ -69,8 +74,8 @@ public class QuickWizardManager {
         //TODO
         //apiContext.getOperationsContext().getDatabaseRepository().getGrantDao().createOrUpdate(newDmp.getGrant());
         DmpEntity dmpret = apiContext.getOperationsContext().getDatabaseRepository().getDmpDao().createOrUpdate(newDmp);
-        if (dataManagementPlan.getAssociatedUsers().size() == 0)
+//        if (dataManagementPlan.getAssociatedUsers().size() == 0)
-            assignUser(newDmp, user, apiContext);
+//            assignUser(newDmp, user, apiContext);
 
 //        this.updateIndex(dmpret);
 
@@ -88,7 +93,7 @@ public class QuickWizardManager {
         userDMP.setDmp(dmp.getId());
         userDMP.setUserId(userInfo.getId());
         userDMP.setRole(DmpUserRole.User);
-        apiContext.getOperationsContext().getDatabaseRepository().getUserDmpDao().createOrUpdate(userDMP);
+        //apiContext.getOperationsContext().getDatabaseRepository().getUserDmpDao().createOrUpdate(userDMP);
     }
 
     private void createGrantIfItDoesntExist(DmpEntity newDmp, UserEntity userInfo) throws InvalidApplicationException {

dmp-backend/web/src/main/java/eu/eudat/logic/managers/ResearcherManager.java

@@ -11,8 +11,10 @@ import eu.eudat.data.query.items.item.researcher.ResearcherCriteriaRequest;
 import eu.eudat.logic.proxy.config.exceptions.HugeResultSet;
 import eu.eudat.logic.proxy.config.exceptions.NoURLFound;
 import eu.eudat.logic.proxy.fetching.RemoteFetcher;
+import eu.eudat.query.UserQuery;
 import eu.eudat.queryable.QueryableList;
 import eu.eudat.logic.services.ApiContext;
+import gr.cite.tools.data.query.QueryFactory;
 import org.springframework.beans.factory.annotation.Autowired;
 import org.springframework.stereotype.Component;
 
@@ -31,18 +33,20 @@ public class ResearcherManager {
     private RemoteFetcher remoteFetcher;
     private ConfigLoader configLoader;
     private final UserScope userScope;
+    private final QueryFactory queryFactory;
 
     @Autowired
-    public ResearcherManager(ApiContext apiContext, ConfigLoader configLoader, UserScope userScope) {
+    public ResearcherManager(ApiContext apiContext, ConfigLoader configLoader, UserScope userScope, QueryFactory queryFactory) {
         this.apiContext = apiContext;
         this.remoteFetcher = apiContext.getOperationsContext().getRemoteFetcher();
         this.configLoader = configLoader;
         this.userScope = userScope;
+        this.queryFactory = queryFactory;
     }
 
     public Researcher create(eu.eudat.models.data.researcher.Researcher researcher) throws Exception {
         Researcher researcherEntity = researcher.toDataModel();
-        researcherEntity.setCreationUser(apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(this.userScope.getUserId()));
+        researcherEntity.setCreationUser(this.queryFactory.query(UserQuery.class).ids(this.userScope.getUserId()).first());
         return apiContext.getOperationsContext().getDatabaseRepository().getResearcherDao().createOrUpdate(researcherEntity);
     }
 

dmp-backend/web/src/main/java/eu/eudat/logic/managers/UnlinkEmailConfirmationManager.java

@@ -11,6 +11,7 @@ import eu.eudat.logic.services.ApiContext;
 import eu.eudat.logic.services.operations.DatabaseRepository;
 import eu.eudat.model.UserContactInfo;
 import eu.eudat.query.UserContactInfoQuery;
+import eu.eudat.query.UserQuery;
 import gr.cite.tools.data.query.Ordering;
 import gr.cite.tools.data.query.QueryFactory;
 import org.slf4j.Logger;
@@ -71,15 +72,15 @@ public class UnlinkEmailConfirmationManager {
 
     @Transactional
     private void unlinkUser(String emailTobeUnlinked, Integer provider) throws InvalidApplicationException {
-        UserCredentialEntity credential = databaseRepository.getCredentialDao().asQueryable()
+//        UserCredentialEntity credential = databaseRepository.getCredentialDao().asQueryable()
-                .where((builder, root) -> builder.and(builder.equal(root.get("email"), emailTobeUnlinked), builder.equal(root.get("provider"), provider))).getSingle();
+//                .where((builder, root) -> builder.and(builder.equal(root.get("email"), emailTobeUnlinked), builder.equal(root.get("provider"), provider))).getSingle();
-        if(credential != null) {
+//        if(credential != null) {
-            databaseRepository.getCredentialDao().delete(credential);
+//            databaseRepository.getCredentialDao().delete(credential);
-        }
+//        }
     }
 
     public void sendConfirmationEmail(String email, UUID userId, Integer provider) throws InvalidApplicationException {
-        UserEntity user = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(userId);
+        UserEntity user = this.queryFactory.query(UserQuery.class).ids(userId).first();
         UserContactInfoQuery query = this.queryFactory.query(UserContactInfoQuery.class).userIds(user.getId());
         query.setOrder(new Ordering().addAscending(UserContactInfo._ordinal));
         if (query.first().getValue() != null && !query.first().getValue().equals(email)) {

dmp-backend/web/src/main/java/eu/eudat/logic/managers/UserManager.java

@@ -1,49 +1,27 @@
 package eu.eudat.logic.managers;
 
-import com.fasterxml.jackson.databind.ObjectMapper;
-import eu.eudat.authorization.Permission;
 import eu.eudat.commons.scope.user.UserScope;
 import eu.eudat.commons.types.descriptiontemplate.DefinitionEntity;
-import eu.eudat.data.UserCredentialEntity;
-import eu.eudat.data.DmpEntity;
-import eu.eudat.data.dao.criteria.DataManagementPlanCriteria;
-import eu.eudat.data.dao.entities.UserInfoDao;
-import eu.eudat.data.DescriptionTemplateEntity;
-import eu.eudat.data.UserEntity;
-import eu.eudat.data.UserRoleEntity;
-import eu.eudat.data.query.items.table.userinfo.UserInfoTableRequestItem;
-import eu.eudat.logic.builders.entity.UserRoleBuilder;
-import eu.eudat.logic.builders.model.models.DataTableDataBuilder;
-import eu.eudat.logic.services.ApiContext;
 import eu.eudat.commons.types.xml.XmlBuilder;
-import eu.eudat.models.HintedModelFactory;
+import eu.eudat.data.DescriptionTemplateEntity;
-import eu.eudat.models.data.dmp.DataManagementPlan;
+import eu.eudat.data.UserCredentialEntity;
-import eu.eudat.models.data.helpers.common.DataTableData;
+import eu.eudat.data.UserEntity;
-import eu.eudat.models.data.userinfo.UserCredential;
+import eu.eudat.logic.services.ApiContext;
-import eu.eudat.models.data.userinfo.UserListingModel;
-import eu.eudat.models.data.userinfo.UserProfile;
 import eu.eudat.query.UserCredentialQuery;
-import eu.eudat.queryable.QueryableList;
 import gr.cite.commons.web.authz.service.AuthorizationService;
 import gr.cite.tools.data.query.QueryFactory;
-import org.json.JSONObject;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 import org.springframework.beans.factory.annotation.Autowired;
 import org.springframework.core.env.Environment;
-import org.springframework.http.HttpHeaders;
-import org.springframework.http.HttpStatus;
-import org.springframework.http.MediaType;
-import org.springframework.http.ResponseEntity;
 import org.springframework.stereotype.Component;
 import org.w3c.dom.Document;
 import org.w3c.dom.Element;
 
 import javax.management.InvalidApplicationException;
-import java.io.*;
+import java.util.ArrayList;
-import java.nio.file.Files;
+import java.util.List;
-import java.util.*;
+import java.util.UUID;
-import java.util.stream.Collectors;
 
 @Component
 public class UserManager {
@@ -75,125 +53,125 @@ public class UserManager {
 		return datasetprofile;
 	}
 
-	public DataTableData<UserListingModel> getPaged(UserInfoTableRequestItem userInfoTableRequestItem) throws Exception {
+//	public DataTableData<UserListingModel> getPaged(UserInfoTableRequestItem userInfoTableRequestItem) throws Exception {
-		QueryableList<UserEntity> users = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().getWithCriteria(userInfoTableRequestItem.getCriteria()).withHint(HintedModelFactory.getHint(UserListingModel.class));
+//		QueryableList<UserEntity> users = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().getWithCriteria(userInfoTableRequestItem.getCriteria()).withHint(HintedModelFactory.getHint(UserListingModel.class));
-		QueryableList<UserEntity> pagedUsers = PaginationManager.applyPaging(users, userInfoTableRequestItem);
+//		QueryableList<UserEntity> pagedUsers = PaginationManager.applyPaging(users, userInfoTableRequestItem);
+//
+//		List<UserListingModel> modelUsers = pagedUsers.select(item -> new UserListingModel().fromDataModel(item));
+//		return apiContext.getOperationsContext().getBuilderFactory().getBuilder(DataTableDataBuilder.class).totalCount(users.count()).data(modelUsers).build();
+//	}
 	
-		List<UserListingModel> modelUsers = pagedUsers.select(item -> new UserListingModel().fromDataModel(item));
+//	public List<UserCredential> getCredentials(UUID userId) throws InvalidApplicationException {
-		return apiContext.getOperationsContext().getBuilderFactory().getBuilder(DataTableDataBuilder.class).totalCount(users.count()).data(modelUsers).build();
+//		List<UserCredential> results = new ArrayList<>();
-	}
+//		UserEntity user = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(userId);
+//		List<UserCredentialEntity> credentials = this.queryFactory.query(UserCredentialQuery.class).userIds(user.getId()).collect();
+//		credentials.forEach(credential -> {
+//			UserCredential userCredential = new UserCredential();
+//			results.add(userCredential);
+//		});
+//		return results;
+//	}
 
-	public List<UserCredential> getCredentials(UUID userId) throws InvalidApplicationException {
+//	public UserProfile getSingle(UUID userId) throws Exception {
-		List<UserCredential> results = new ArrayList<>();
+//		UserEntity user = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(userId);
-		UserEntity user = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(userId);
+//		UserProfile profile = new UserProfile().fromDataModel(user);
-		List<UserCredentialEntity> credentials = this.queryFactory.query(UserCredentialQuery.class).userIds(user.getId()).collect();
+//		List<Integer> roles = new LinkedList<>();
-		credentials.forEach(credential -> {
+//		DataManagementPlanCriteria criteria = new DataManagementPlanCriteria();
-			UserCredential userCredential = new UserCredential();
+//		criteria.setAllVersions(false);
-			results.add(userCredential);
+//		QueryableList<DmpEntity> items = apiContext.getOperationsContext().getDatabaseRepository().getDmpDao().getWithCriteria(criteria);
-		});
+//		List<DmpEntity> dmps = apiContext.getOperationsContext().getDatabaseRepository().getDmpDao().getAuthenticated(items, userId, roles).take(5).toList();
-		return results;
+//		profile.setAssociatedDmps(dmps.stream().map(x -> new DataManagementPlan().fromDataModel(x)).collect(Collectors.toList()));
-	}
+//		return profile;
+//	}
 
-	public UserProfile getSingle(UUID userId) throws Exception {
+//	public void editRoles(UserListingModel user) throws InvalidApplicationException {
-		UserEntity user = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(userId);
+//		UserEntity userInfo = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(user.getId());
-		UserProfile profile = new UserProfile().fromDataModel(user);
+//		//userInfo.getUserRoles().stream().forEach(item -> apiContext.getOperationsContext().getDatabaseRepository().getUserRoleDao().delete(item)); //TODO
-		List<Integer> roles = new LinkedList<>();
+//		for (String role : user.getAppRoles()) {
-		DataManagementPlanCriteria criteria = new DataManagementPlanCriteria();
+//			UserRoleEntity userRole = apiContext.getOperationsContext().getBuilderFactory().getBuilder(UserRoleBuilder.class).role(role).userInfo(userInfo).build();
-		criteria.setAllVersions(false);
+//			apiContext.getOperationsContext().getDatabaseRepository().getUserRoleDao().createOrUpdate(userRole);
-		QueryableList<DmpEntity> items = apiContext.getOperationsContext().getDatabaseRepository().getDmpDao().getWithCriteria(criteria);
+//		}
-		List<DmpEntity> dmps = apiContext.getOperationsContext().getDatabaseRepository().getDmpDao().getAuthenticated(items, userId, roles).take(5).toList();
+//	}
-		profile.setAssociatedDmps(dmps.stream().map(x -> new DataManagementPlan().fromDataModel(x)).collect(Collectors.toList()));
-		return profile;
-	}
 
-	public void editRoles(UserListingModel user) throws InvalidApplicationException {
+//	public void updateSettings(Map<String, Object> settings) throws IOException, InvalidApplicationException {
-		UserEntity userInfo = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(user.getId());
+//		UserEntity userInfo = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(this.userScope.getUserId());
-		//userInfo.getUserRoles().stream().forEach(item -> apiContext.getOperationsContext().getDatabaseRepository().getUserRoleDao().delete(item)); //TODO
+//		apiContext.getOperationsContext().getDatabaseRepository().detachEntity(userInfo);
-		for (String role : user.getAppRoles()) {
+//		HashMap<String, Object> result =
-			UserRoleEntity userRole = apiContext.getOperationsContext().getBuilderFactory().getBuilder(UserRoleBuilder.class).role(role).userInfo(userInfo).build();
+//				new ObjectMapper().readValue(userInfo.getAdditionalInfo(), HashMap.class);
-			apiContext.getOperationsContext().getDatabaseRepository().getUserRoleDao().createOrUpdate(userRole);
+//		userInfo.setName(settings.entrySet().stream().filter(entry -> entry.getKey().equals("name")).filter(Objects::nonNull).map(entry -> entry.getValue().toString()).findFirst().orElse(userInfo.getName()));
-		}
+//		settings.remove("name");
-	}
+//		result.putAll(settings);
-
+//		userInfo.setAdditionalInfo(new JSONObject(result).toString());
-	public void updateSettings(Map<String, Object> settings) throws IOException, InvalidApplicationException {
+//		apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao()
-		UserEntity userInfo = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(this.userScope.getUserId());
+//				.createOrUpdate(userInfo);
-		apiContext.getOperationsContext().getDatabaseRepository().detachEntity(userInfo);
+//	}
-		HashMap<String, Object> result =
+//
-				new ObjectMapper().readValue(userInfo.getAdditionalInfo(), HashMap.class);
+//	public DataTableData<UserListingModel> getCollaboratorsPaged(UserInfoTableRequestItem userInfoTableRequestItem) throws Exception {
-		userInfo.setName(settings.entrySet().stream().filter(entry -> entry.getKey().equals("name")).filter(Objects::nonNull).map(entry -> entry.getValue().toString()).findFirst().orElse(userInfo.getName()));
+//		UserInfoDao userInfoDao = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao();
-		settings.remove("name");
+//		QueryableList<UserEntity> users = userInfoDao.getWithCriteria(userInfoTableRequestItem.getCriteria());
-		result.putAll(settings);
+//
-		userInfo.setAdditionalInfo(new JSONObject(result).toString());
+//		List<UserListingModel> colaborators = userInfoDao.getAuthenticated(users, this.userScope.getUserId())
-		apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao()
+//				.withHint(HintedModelFactory.getHint(UserListingModel.class))
-				.createOrUpdate(userInfo);
+//				.select(colaborator -> new UserListingModel().fromDataModel(colaborator));
-	}
+//
-
+//		DataTableData<UserListingModel> dataTableData = new DataTableData<>();
-	public DataTableData<UserListingModel> getCollaboratorsPaged(UserInfoTableRequestItem userInfoTableRequestItem) throws Exception {
+//		dataTableData.setData(colaborators);
-		UserInfoDao userInfoDao = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao();
+//		dataTableData.setTotalCount((long) colaborators.size());
-		QueryableList<UserEntity> users = userInfoDao.getWithCriteria(userInfoTableRequestItem.getCriteria());
+//		return dataTableData;
-
+//	}
-		List<UserListingModel> colaborators = userInfoDao.getAuthenticated(users, this.userScope.getUserId())
+//
-				.withHint(HintedModelFactory.getHint(UserListingModel.class))
+//	public ResponseEntity<byte[]> exportToCsv() throws IOException, InvalidApplicationException {
-				.select(colaborator -> new UserListingModel().fromDataModel(colaborator));
+//
-
+//		this.authorizationService.authorizeForce(Permission.AdminRole);
-		DataTableData<UserListingModel> dataTableData = new DataTableData<>();
+//        
-		dataTableData.setData(colaborators);
+//        List<UserEntity> users = this.apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().asQueryable().toList();
-		dataTableData.setTotalCount((long) colaborators.size());
+//        StringBuilder resultBuilder = new StringBuilder();
-		return dataTableData;
+//        resultBuilder.append("User Id").append(",").append("User Name").append(",").append("User Email").append("\n");
-	}
+//        users.stream().forEach(user -> resultBuilder.append(user.getId().toString()).append(",")
-
+//        		.append(user.getName()).append(",")
-	public ResponseEntity<byte[]> exportToCsv() throws IOException, InvalidApplicationException {
+////TODO        		.append(user.getEmail()).append("\n")
-
+//        );
-		this.authorizationService.authorizeForce(Permission.AdminRole);
+//        String result = resultBuilder.toString();
-        
+//        String fileName = "Users_dump";//dmp.getLabel();
-        List<UserEntity> users = this.apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().asQueryable().toList();
+//        fileName = fileName.replaceAll("[^a-zA-Z0-9+ ]", "");
-        StringBuilder resultBuilder = new StringBuilder();
+//        String uuid = UUID.randomUUID().toString();
-        resultBuilder.append("User Id").append(",").append("User Name").append(",").append("User Email").append("\n");
+//        File file = new File(this.environment.getProperty("temp.temp") + uuid + ".csv");
-        users.stream().forEach(user -> resultBuilder.append(user.getId().toString()).append(",")
+//        OutputStream output = new FileOutputStream(file);
-        		.append(user.getName()).append(",")
+//        try {
-//TODO        		.append(user.getEmail()).append("\n")
+////            mapper.writeValue(file, rdaExportModel);
-        );
+//            output.write(result.getBytes());
-        String result = resultBuilder.toString();
+//            output.flush();
-        String fileName = "Users_dump";//dmp.getLabel();
+//            output.close();
-        fileName = fileName.replaceAll("[^a-zA-Z0-9+ ]", "");
+//        } catch (IOException e) {
-        String uuid = UUID.randomUUID().toString();
+//            logger.error(e.getMessage(), e);
-        File file = new File(this.environment.getProperty("temp.temp") + uuid + ".csv");
+//        }
-        OutputStream output = new FileOutputStream(file);
+//
-        try {
+//        InputStream resource = new FileInputStream(file);
-//            mapper.writeValue(file, rdaExportModel);
+//        HttpHeaders responseHeaders = new HttpHeaders();
-            output.write(result.getBytes());
+//        responseHeaders.setContentLength(file.length());
-            output.flush();
+//        responseHeaders.setContentType(MediaType.APPLICATION_OCTET_STREAM);
-            output.close();
+//        responseHeaders.set("Content-Disposition", "attachment;filename=" + fileName + ".csv");
-        } catch (IOException e) {
+//        responseHeaders.set("Access-Control-Expose-Headers", "Content-Disposition");
-            logger.error(e.getMessage(), e);
+//        responseHeaders.get("Access-Control-Expose-Headers").add("Content-Type");
-        }
+//
-
+//        byte[] content = org.apache.poi.util.IOUtils.toByteArray(resource);
-        InputStream resource = new FileInputStream(file);
+//        resource.close();
-        HttpHeaders responseHeaders = new HttpHeaders();
+//        Files.deleteIfExists(file.toPath());
-        responseHeaders.setContentLength(file.length());
+//        return new ResponseEntity<>(content, responseHeaders, HttpStatus.OK);
-        responseHeaders.setContentType(MediaType.APPLICATION_OCTET_STREAM);
+//    }
-        responseHeaders.set("Content-Disposition", "attachment;filename=" + fileName + ".csv");
+//
-        responseHeaders.set("Access-Control-Expose-Headers", "Content-Disposition");
+//    public UserProfile getFromEmail(String email) throws InvalidApplicationException {
-        responseHeaders.get("Access-Control-Expose-Headers").add("Content-Type");
+//		UserEntity user = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().asQueryable().where((builder, root) -> builder.equal(root.get("email"), email)).getSingle();
-
+//		return new UserProfile().fromDataModel(user);
-        byte[] content = org.apache.poi.util.IOUtils.toByteArray(resource);
+//	}
-        resource.close();
+//
-        Files.deleteIfExists(file.toPath());
+//	public Long countActiveUsers(){ //TODO: Authn
-        return new ResponseEntity<>(content, responseHeaders, HttpStatus.OK);
+//		return  0L;
-    }
+//		//return apiContext.getOperationsContext().getDatabaseRepository().getUserTokenDao().asQueryable().where(((builder, root) -> builder.greaterThan(root.get("expiresAt"), new Date()))).count();
-
+//	}
-    public UserProfile getFromEmail(String email) throws InvalidApplicationException {
+//
-		UserEntity user = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().asQueryable().where((builder, root) -> builder.equal(root.get("email"), email)).getSingle();
+//	public Long countAllUsers() throws InvalidApplicationException {
-		return new UserProfile().fromDataModel(user);
+//		return apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().asQueryable().count();
-	}
+//	}
-
-	public Long countActiveUsers(){ //TODO: Authn
-		return  0L;
-		//return apiContext.getOperationsContext().getDatabaseRepository().getUserTokenDao().asQueryable().where(((builder, root) -> builder.greaterThan(root.get("expiresAt"), new Date()))).count();
-	}
-
-	public Long countAllUsers() throws InvalidApplicationException {
-		return apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().asQueryable().count();
-	}
 	
 }

dmp-backend/web/src/main/java/eu/eudat/logic/services/operations/DatabaseRepository.java

@@ -1,7 +1,6 @@
 package eu.eudat.logic.services.operations;
 
 import eu.eudat.data.dao.entities.*;
-import eu.eudat.data.dao.entities.security.CredentialDao;
 
 public interface DatabaseRepository {
 
@@ -13,8 +12,6 @@ public interface DatabaseRepository {
 
     DMPDao getDmpDao();
 
-    DmpDatasetProfileDao getDmpDatasetProfileDao();
-
     OrganisationDao getOrganisationDao();
 
     GrantDao getGrantDao();
@@ -25,20 +22,10 @@ public interface DatabaseRepository {
 
     ServiceDao getServiceDao();
 
-    UserInfoDao getUserInfoDao();
-
-    UserRoleDao getUserRoleDao();
-
     InvitationDao getInvitationDao();
 
-    CredentialDao getCredentialDao();
-
     ExternalDatasetDao getExternalDatasetDao();
 
-    UserDatasetProfileDao getUserDatasetProfileDao();
-
-    UserDmpDao getUserDmpDao();
-
     ContentDao getContentDao();
 
     EmailConfirmationDao getLoginConfirmationEmailDao();

dmp-backend/web/src/main/java/eu/eudat/logic/services/operations/DatabaseRepositoryImpl.java

@@ -1,7 +1,6 @@
 package eu.eudat.logic.services.operations;
 
 import eu.eudat.data.dao.entities.*;
-import eu.eudat.data.dao.entities.security.CredentialDao;
 import jakarta.persistence.EntityManager;
 import org.springframework.beans.factory.annotation.Autowired;
 import org.springframework.stereotype.Service;
@@ -17,8 +16,6 @@ public class DatabaseRepositoryImpl implements DatabaseRepository {
 
     private DMPDao dmpDao;
 
-    private DmpDatasetProfileDao dmpDatasetProfileDao;
-
     private OrganisationDao organisationDao;
 
     private GrantDao GrantDao;
@@ -29,20 +26,10 @@ public class DatabaseRepositoryImpl implements DatabaseRepository {
 
     private ServiceDao serviceDao;
 
-    private UserInfoDao userInfoDao;
-
     private InvitationDao invitationDao;
 
-    private CredentialDao credentialDao;
-
     private ExternalDatasetDao externalDatasetDao;
 
-    private UserRoleDao userRoleDao;
-
-    private UserDatasetProfileDao userDatasetProfileDao;
-
-    private UserDmpDao userDmpDao;
-
     private ContentDao contentDao;
 
     private EmailConfirmationDao loginConfirmationEmailDao;
@@ -79,11 +66,6 @@ public class DatabaseRepositoryImpl implements DatabaseRepository {
         this.dmpDao = dmpDao;
     }
 
-    @Autowired
-    private void setDmpDatasetProfileDao(DmpDatasetProfileDao dmpDatasetProfileDao) {
-        this.dmpDatasetProfileDao = dmpDatasetProfileDao;
-    }
-
     @Autowired
     private void setOrganisationDao(OrganisationDao organisationDao) {
         this.organisationDao = organisationDao;
@@ -110,10 +92,6 @@ public class DatabaseRepositoryImpl implements DatabaseRepository {
     }
 
     @Autowired
-    private void setUserInfoDao(UserInfoDao userInfoDao) {
-        this.userInfoDao = userInfoDao;
-    }
-
     @Override
     public DataRepositoryDao getDataRepositoryDao() {
         return dataRepositoryDao;
@@ -134,11 +112,6 @@ public class DatabaseRepositoryImpl implements DatabaseRepository {
         return dmpDao;
     }
 
-    @Override
-    public DmpDatasetProfileDao getDmpDatasetProfileDao() {
-        return dmpDatasetProfileDao;
-    }
-
     @Override
     public OrganisationDao getOrganisationDao() {
         return organisationDao;
@@ -164,11 +137,6 @@ public class DatabaseRepositoryImpl implements DatabaseRepository {
         return serviceDao;
     }
 
-    @Override
-    public UserInfoDao getUserInfoDao() {
-        return userInfoDao;
-    }
-
     @Override
     public InvitationDao getInvitationDao() {
         return invitationDao;
@@ -179,16 +147,6 @@ public class DatabaseRepositoryImpl implements DatabaseRepository {
         this.invitationDao = invitationDao;
     }
 
-    @Override
-    public CredentialDao getCredentialDao() {
-        return credentialDao;
-    }
-
-    @Autowired
-    public void setCredentialDao(CredentialDao credentialDao) {
-        this.credentialDao = credentialDao;
-    }
-
     @Override
     public ExternalDatasetDao getExternalDatasetDao() {
         return externalDatasetDao;
@@ -199,31 +157,11 @@ public class DatabaseRepositoryImpl implements DatabaseRepository {
         this.externalDatasetDao = externalDatasetDao;
     }
 
-    @Override
-    public UserRoleDao getUserRoleDao() {
-        return userRoleDao;
-    }
-
-    @Autowired
-    public void setUserRoleDao(UserRoleDao userRoleDao) {
-        this.userRoleDao = userRoleDao;
-    }
-
     @Autowired
     public void setEntityManager(EntityManager entityManager) {
         this.entityManager = entityManager;
     }
 
-    @Override
-    public UserDmpDao getUserDmpDao() {
-        return userDmpDao;
-    }
-
-    @Autowired
-    public void setUserDmpDao(UserDmpDao userDmpDao) {
-        this.userDmpDao = userDmpDao;
-    }
-
     @Override
     public ContentDao getContentDao() {
         return this.contentDao;
@@ -284,15 +222,6 @@ public class DatabaseRepositoryImpl implements DatabaseRepository {
         this.notificationDao = notificationDao;
     }
 
-    @Override
-    public UserDatasetProfileDao getUserDatasetProfileDao() {
-        return userDatasetProfileDao;
-    }
-
-    @Autowired
-    public void setUserDatasetProfileDao(UserDatasetProfileDao userDatasetProfileDao) {
-        this.userDatasetProfileDao = userDatasetProfileDao;
-    }
 
     @Override
     public FileUploadDao getFileUploadDao() {

dmp-backend/web/src/main/java/eu/eudat/logic/services/references/ReferenceService.java

@@ -51,6 +51,7 @@ import gr.cite.tools.logging.LoggerService;
 import gr.cite.tools.logging.MapLogEntry;
 import jakarta.persistence.EntityManager;
 import jakarta.xml.bind.JAXBException;
+import net.minidev.json.JSONArray;
 import org.jetbrains.annotations.NotNull;
 import org.slf4j.LoggerFactory;
 import org.springframework.context.MessageSource;
@@ -323,7 +324,7 @@ public class ReferenceService {
             Map<String, String> map = new HashMap<>();
             source.getOptions().forEach(option -> {
                 map.put(option.getCode(), option.getValue());
-                map.put("label", source.getLabel());
+                map.put("tag", source.getLabel());
                 map.put("key", source.getKey());
             });
             results.add(map);
@@ -373,7 +374,7 @@ public class ReferenceService {
                         .collect(Collectors.toList()));
             }
             if (fetchStrategy == FetchStrategy.FIRST)
-                return results.getResults().stream().peek(x -> x.put("label", label)).peek(x -> x.put("key", key)).collect(Collectors.toList());
+                return results.getResults().stream().peek(x -> x.put("tag", label)).peek(x -> x.put("key", key)).collect(Collectors.toList());
 
             if (results.getPagination() != null && results.getPagination().get("pages") != null) //if has more pages, add them to the pages set
                 for (int i = 2; i <= results.getPagination().get("pages"); i++)
@@ -394,7 +395,7 @@ public class ReferenceService {
             Results remainingResults = optionalResults.orElseGet(Results::new);
             remainingResults.getResults().addAll(results.getResults());
 
-            return remainingResults.getResults().stream().peek(x -> x.put("label", label)).peek(x -> x.put("key", key)).collect(Collectors.toList());
+            return remainingResults.getResults().stream().peek(x -> x.put("tag", label)).peek(x -> x.put("key", key)).collect(Collectors.toList());
         }
         else {
             return new LinkedList<>();
@@ -404,17 +405,29 @@ public class ReferenceService {
     private String replaceLookupFields(String urlPath, ReferenceDefinitionSearchLookup lookup, String firstPage, List<QueryConfigEntity> queries){
         String completedPath = urlPath;
 
-        if (urlPath.contains("{like}")){
+        if (urlPath.contains("openaire") || urlPath.contains("orcid") ){
             if (lookup.getLike() != null) {
+                completedPath = completedPath.replace("{query}", lookup.getLike());
                 completedPath = completedPath.replace("{like}", lookup.getLike());
             } else {
+                completedPath = completedPath.replace("{query}", "*");
                 completedPath = completedPath.replace("{like}", "*");
             }
         }
 
-        if (urlPath.contains("{page}")){
+        if (urlPath.contains("{like}")){
+            if (lookup.getLike() != null) {
+                completedPath = completedPath.replace("{like}", lookup.getLike());
+            } else {
+                completedPath = completedPath.replace("{like}", "");
+            }
+        }
+
+        if (urlPath.contains("{page}")) {
             if (lookup.getPage() != null && lookup.getPage().getOffset() > 0) {
                 completedPath = completedPath.replace("{page}", String.valueOf(lookup.getPage().getOffset()));
+            } else if (firstPage != null) {
+                completedPath = completedPath.replace("{page}", firstPage);
             } else {
                 completedPath = completedPath.replace("{page}", "1");
             }
@@ -428,13 +441,6 @@ public class ReferenceService {
             }
         }
 
-        if (urlPath.contains("openaire")){
-            if (lookup.getLike() != null) {
-                completedPath = completedPath.replace("{query}", lookup.getLike());
-            } else {
-                completedPath = completedPath.replace("{query}", "*");
-            }
-        }
 
         return completedPath;
     }
@@ -485,20 +491,76 @@ public class ReferenceService {
     private static List<Map<String, String>> parseData (DocumentContext jsonContext, ResultsConfigurationEntity resultsEntity) {
         List <Map<String, String>> rawData = jsonContext.read(resultsEntity.getResultsArrayPath());
         List<Map<String, String>> parsedData = new ArrayList<>();
-        rawData.forEach(stringObjectMap -> {
+
+        for (Map<String, String> stringObjectMap: rawData){
             Map<String, String> map = new HashMap<>();
-            resultsEntity.getFieldsMapping().forEach(field ->{
+            for(ResultFieldsMappingConfigurationEntity field: resultsEntity.getFieldsMapping()){
                 String pathValue = field.getResponsePath();
-                if (stringObjectMap.containsKey(pathValue)){
+                if (!pathValue.contains(".")){
-                    map.put(field.getCode(), stringObjectMap.get(pathValue));
+                    if (stringObjectMap.containsKey(pathValue)) {
+                        //map.put(field.getCode(), stringObjectMap.get(pathValue));
+                        map.put(field.getCode(), normalizeValue(stringObjectMap.get(pathValue)));
+                    }
+                }else {
+                    if (stringObjectMap.containsKey(pathValue.split("\\.")[0])){
+                        String value = null;
+                        Object fieldObj = stringObjectMap.get(pathValue.split("\\.")[0]);
+                        if (fieldObj != null){
+                            if (fieldObj instanceof Map){
+                                Object o = ((Map<String, Object>) fieldObj).get(pathValue.split("\\.")[1]);
+                                if(o instanceof String){
+                                    value = (String)o;
+                                }
+                                else if(o instanceof Integer){
+                                    value = String.valueOf(o);
+                                }
+                            } else if (fieldObj instanceof List) {
+                                Object o = ((List<Map<String,?>>) fieldObj).get(0).get(pathValue.split("\\.")[1]);
+                                if(o instanceof String){
+                                    value = (String)o;
+                                }
+                                else if(o instanceof Integer){
+                                    value = String.valueOf(o);
+                                }
+                            }
+                        }
+                        if (value != null){
+                            map.put(field.getCode(), value);
+                        }
+                    }
+                }
             }
-            });
             parsedData.add(map);
-
+        }
-
-        });
         return parsedData;
     }
 
 
+    private static String normalizeValue(Object value) {
+        if (value instanceof JSONArray) {
+            JSONArray jarr = (JSONArray) value;
+            if (jarr.get(0) instanceof String) {
+                return jarr.get(0).toString();
+            } else {
+                for (Object o : jarr) {
+                    if ((o instanceof Map) && ((Map) o).containsKey("content")) {
+                        try {
+                            return ((Map<String, String>) o).get("content");
+                        }
+                        catch (ClassCastException e){
+                            if(((Map<?, ?>) o).get("content") instanceof Integer) {
+                                return String.valueOf(((Map<?, ?>) o).get("content"));
+                            }
+                            return null;
+                        }
+                    }
+                }
+            }
+        } else if (value instanceof Map) {
+            String key = ((Map<String, String>)value).containsKey("$") ? "$" : "content";
+            return ((Map<String, String>)value).get(key);
+        }
+        return value != null ? value.toString() : null;
+    }
+
 }

dmp-backend/web/src/main/java/eu/eudat/models/data/admin/composite/DatasetProfile.java

@@ -1,11 +1,10 @@
 package eu.eudat.models.data.admin.composite;
 
 import eu.eudat.commons.types.descriptiontemplate.DefinitionEntity;
-import eu.eudat.commons.types.descriptiontemplate.SectionEntity;
 import eu.eudat.logic.utilities.builders.ModelBuilder;
+import eu.eudat.model.DmpUser;
 import eu.eudat.models.data.admin.components.datasetprofile.Page;
 import eu.eudat.models.data.admin.components.datasetprofile.Section;
-import eu.eudat.models.data.listingmodels.UserInfoListingModel;
 
 import java.util.ArrayList;
 import java.util.Collections;
@@ -21,7 +20,7 @@ public class DatasetProfile {
     private Short status;
     private Short version;
     private String language;
-    private List<UserInfoListingModel> users;
+    private List<DmpUser> users;
 
 
     public String getLabel() {
@@ -74,10 +73,10 @@ public class DatasetProfile {
         this.language = language;
     }
 
-    public List<UserInfoListingModel> getUsers() {
+    public List<DmpUser> getUsers() {
         return users;
     }
-    public void setUsers(List<UserInfoListingModel> users) {
+    public void setUsers(List<DmpUser> users) {
         this.users = users;
     }
 

dmp-backend/web/src/main/java/eu/eudat/models/data/dashboard/recent/model/RecentActivityModel.java

@@ -1,8 +1,8 @@
 package eu.eudat.models.data.dashboard.recent.model;
 
+import eu.eudat.model.DmpUser;
 import eu.eudat.models.DataModel;
 import eu.eudat.models.data.datasetprofile.DatasetProfileOverviewModel;
-import eu.eudat.models.data.listingmodels.UserInfoListingModel;
 import eu.eudat.data.old.queryableentity.DataEntity;
 
 import java.util.Date;
@@ -20,7 +20,7 @@ public abstract class RecentActivityModel<T extends DataEntity, S extends DataMo
 	private Date publishedAt;
 	private DatasetProfileOverviewModel profile;
 	private int type;
-	private List<UserInfoListingModel> users;
+	private List<DmpUser> users;
 	private Boolean isPublic;
 
 	public String getId() {
@@ -111,11 +111,11 @@ public abstract class RecentActivityModel<T extends DataEntity, S extends DataMo
 		this.type = type;
 	}
 
-	public List<UserInfoListingModel> getUsers() {
+	public List<DmpUser> getUsers() {
 		return users;
 	}
 
-	public void setUsers(List<UserInfoListingModel> users) {
+	public void setUsers(List<DmpUser> users) {
 		this.users = users;
 	}
 

dmp-backend/web/src/main/java/eu/eudat/models/data/dashboard/recent/model/RecentDatasetModel.java

@@ -1,11 +1,6 @@
 package eu.eudat.models.data.dashboard.recent.model;
 
 import eu.eudat.data.DescriptionEntity;
-import eu.eudat.models.data.datasetprofile.DatasetProfileOverviewModel;
-import eu.eudat.models.data.listingmodels.UserInfoListingModel;
-
-import java.util.Date;
-import java.util.stream.Collectors;
 
 public class RecentDatasetModel extends RecentActivityModel<DescriptionEntity, RecentDatasetModel> {
 	private String dmp;

dmp-backend/web/src/main/java/eu/eudat/models/data/dashboard/recent/model/RecentDmpModel.java

@@ -1,14 +1,12 @@
 package eu.eudat.models.data.dashboard.recent.model;
 
 import eu.eudat.data.DmpEntity;
-import eu.eudat.models.data.listingmodels.UserInfoListingModel;
 import eu.eudat.models.data.urls.DatasetUrlListing;
 
 import jakarta.transaction.Transactional;
 import java.util.List;
 import java.util.Map;
 import java.util.UUID;
-import java.util.stream.Collectors;
 
 public class RecentDmpModel extends RecentActivityModel<DmpEntity, RecentDmpModel> {
 	private Map<String, Object> extraProperties;

dmp-backend/web/src/main/java/eu/eudat/models/data/dataset/DatasetOverviewModel.java

@@ -2,17 +2,15 @@ package eu.eudat.models.data.dataset;
 
 import eu.eudat.commons.enums.DescriptionStatus;
 import eu.eudat.data.DescriptionEntity;
+import eu.eudat.model.DmpUser;
 import eu.eudat.models.DataModel;
 import eu.eudat.models.data.datasetprofile.DatasetProfileOverviewModel;
 import eu.eudat.models.data.grant.GrantOverviewModel;
 import eu.eudat.models.data.listingmodels.DataManagementPlanOverviewModel;
-import eu.eudat.models.data.listingmodels.UserInfoListingModel;
 
 import java.time.Instant;
-import java.util.Date;
 import java.util.List;
 import java.util.UUID;
-import java.util.stream.Collectors;
 
 public class DatasetOverviewModel implements DataModel<DescriptionEntity, DatasetOverviewModel> {
 
@@ -20,7 +18,7 @@ public class DatasetOverviewModel implements DataModel<DescriptionEntity, Datase
     private String label;
     private DescriptionStatus status;
     private DatasetProfileOverviewModel datasetTemplate;
-    private List<UserInfoListingModel> users;
+    private List<DmpUser> users;
     private DataManagementPlanOverviewModel dmp;
     private GrantOverviewModel grant;
     private String description;
@@ -56,11 +54,11 @@ public class DatasetOverviewModel implements DataModel<DescriptionEntity, Datase
         this.datasetTemplate = datasetTemplate;
     }
 
-    public List<UserInfoListingModel> getUsers() {
+    public List<DmpUser> getUsers() {
         return users;
     }
 
-    public void setUsers(List<UserInfoListingModel> users) {
+    public void setUsers(List<DmpUser> users) {
         this.users = users;
     }
 

dmp-backend/web/src/main/java/eu/eudat/models/data/dmp/DataManagementPlan.java

@@ -1,26 +1,17 @@
 package eu.eudat.models.data.dmp;
 
-import com.fasterxml.jackson.core.type.TypeReference;
-import com.fasterxml.jackson.databind.ObjectMapper;
-import eu.eudat.commons.enums.DescriptionStatus;
-import eu.eudat.commons.enums.IsActive;
-import eu.eudat.data.DmpBlueprintEntity;
 import eu.eudat.data.DmpEntity;
-import eu.eudat.data.old.*;
+import eu.eudat.model.DmpUser;
 import eu.eudat.model.doi.Doi;
 import eu.eudat.models.DataModel;
 import eu.eudat.models.data.datasetwizard.DatasetWizardModel;
 import eu.eudat.models.data.dynamicfields.DynamicFieldWithValue;
 import eu.eudat.models.data.funder.Funder;
 import eu.eudat.models.data.helpermodels.Tuple;
-import eu.eudat.models.data.listingmodels.UserInfoListingModel;
 import eu.eudat.models.data.grant.Grant;
 import eu.eudat.models.data.project.Project;
-import eu.eudat.models.data.userinfo.UserListingModel;
-import net.minidev.json.JSONObject;
 
 import java.util.*;
-import java.util.stream.Collectors;
 
 public class DataManagementPlan implements DataModel<DmpEntity, DataManagementPlan> {
     private UUID id;
@@ -36,14 +27,12 @@ public class DataManagementPlan implements DataModel<DmpEntity, DataManagementPl
     private Grant grant;
     private List<Organisation> organisations;
     private List<Researcher> researchers;
-    private List<UserListingModel> associatedUsers;
     private List<ExtraFieldModel> extraFields;
-    private eu.eudat.models.data.userinfo.UserInfo creator;
     private Date modified;
     private Date created;
     private List<DynamicFieldWithValue> dynamicFields;
     private Map<String, Object> properties;
-    private List<UserInfoListingModel> users;
+    private List<DmpUser> users;
     private List<Doi> dois;
     private Project project;
     private Funder funder;
@@ -78,13 +67,6 @@ public class DataManagementPlan implements DataModel<DmpEntity, DataManagementPl
         this.groupId = groupId;
     }
 
-    public List<UserListingModel> getAssociatedUsers() {
-        return associatedUsers;
-    }
-    public void setAssociatedUsers(List<UserListingModel> associatedUsers) {
-        this.associatedUsers = associatedUsers;
-    }
-
     public int getVersion() {
         return version;
     }
@@ -120,13 +102,6 @@ public class DataManagementPlan implements DataModel<DmpEntity, DataManagementPl
         this.grant = grant;
     }
 
-    public eu.eudat.models.data.userinfo.UserInfo getCreator() {
-        return creator;
-    }
-    public void setCreator(eu.eudat.models.data.userinfo.UserInfo creator) {
-        this.creator = creator;
-    }
-
     public List<AssociatedProfile> getProfiles() {
         return profiles;
     }
@@ -191,10 +166,10 @@ public class DataManagementPlan implements DataModel<DmpEntity, DataManagementPl
         this.datasets = datasets;
     }
 
-    public List<UserInfoListingModel> getUsers() {
+    public List<DmpUser> getUsers() {
         return users;
     }
-    public void setUsers(List<UserInfoListingModel> users) {
+    public void setUsers(List<DmpUser> users) {
         this.users = users;
     }
 

dmp-backend/web/src/main/java/eu/eudat/models/data/dmp/DataManagementPlanEditorModel.java

@@ -1,23 +1,19 @@
 package eu.eudat.models.data.dmp;
 
-import com.fasterxml.jackson.core.type.TypeReference;
-import com.fasterxml.jackson.databind.ObjectMapper;
-import eu.eudat.data.DmpBlueprintEntity;
 import eu.eudat.data.DmpEntity;
-import eu.eudat.data.old.*;
+import eu.eudat.model.DmpUser;
 import eu.eudat.models.DataModel;
 import eu.eudat.models.data.datasetwizard.DatasetWizardModel;
 import eu.eudat.models.data.dynamicfields.DynamicFieldWithValue;
 import eu.eudat.models.data.funder.FunderDMPEditorModel;
-import eu.eudat.models.data.helpermodels.Tuple;
-import eu.eudat.models.data.listingmodels.UserInfoListingModel;
 import eu.eudat.models.data.grant.GrantDMPEditorModel;
+import eu.eudat.models.data.helpermodels.Tuple;
 import eu.eudat.models.data.project.ProjectDMPEditorModel;
-import eu.eudat.models.data.userinfo.UserListingModel;
-import net.minidev.json.JSONObject;
 
-import java.util.*;
+import java.util.Date;
-import java.util.stream.Collectors;
+import java.util.List;
+import java.util.Map;
+import java.util.UUID;
 
 public class DataManagementPlanEditorModel implements DataModel<DmpEntity, DataManagementPlanEditorModel> {
     private UUID id;
@@ -33,14 +29,12 @@ public class DataManagementPlanEditorModel implements DataModel<DmpEntity, DataM
     private eu.eudat.models.data.grant.GrantDMPEditorModel grant;
     private List<Organisation> organisations;
     private List<Researcher> researchers;
-    private List<UserListingModel> associatedUsers;
     private List<ExtraFieldModel> extraFields;
-    private eu.eudat.models.data.userinfo.UserInfo creator;
     private Date modified;
     private Date created;
     private List<DynamicFieldWithValue> dynamicFields;
     private Map<String, Object> properties;
-    private List<UserInfoListingModel> users;
+    private List<DmpUser> users;
     private List<UUID> datasetsToBeFinalized;
     private ProjectDMPEditorModel project;
     private FunderDMPEditorModel funder;
@@ -74,16 +68,6 @@ public class DataManagementPlanEditorModel implements DataModel<DmpEntity, DataM
         this.groupId = groupId;
     }
 
-    public List<UserListingModel> getAssociatedUsers() {
-        return associatedUsers;
-    }
-    public void setAssociatedUsers(List<UserListingModel> associatedUsers) {
-        this.associatedUsers = associatedUsers;
-    }
-
-    public int getVersion() {
-        return version;
-    }
     public void setVersion(int version) {
         this.version = version;
     }
@@ -116,13 +100,6 @@ public class DataManagementPlanEditorModel implements DataModel<DmpEntity, DataM
         this.grant = grant;
     }
 
-    public eu.eudat.models.data.userinfo.UserInfo getCreator() {
-        return creator;
-    }
-    public void setCreator(eu.eudat.models.data.userinfo.UserInfo creator) {
-        this.creator = creator;
-    }
-
     public List<AssociatedProfile> getProfiles() {
         return profiles;
     }
@@ -187,10 +164,10 @@ public class DataManagementPlanEditorModel implements DataModel<DmpEntity, DataM
         this.datasets = datasets;
     }
 
-    public List<UserInfoListingModel> getUsers() {
+    public List<DmpUser> getUsers() {
         return users;
     }
-    public void setUsers(List<UserInfoListingModel> users) {
+    public void setUsers(List<DmpUser> users) {
         this.users = users;
     }
 

dmp-backend/web/src/main/java/eu/eudat/models/data/dmp/DataManagementPlanNewVersionModel.java

@@ -11,8 +11,6 @@ import eu.eudat.models.data.dataset.Dataset;
 import eu.eudat.models.data.funder.FunderDMPEditorModel;
 import eu.eudat.models.data.grant.GrantDMPEditorModel;
 import eu.eudat.models.data.project.ProjectDMPEditorModel;
-import eu.eudat.models.data.userinfo.UserInfo;
-import eu.eudat.models.data.userinfo.UserListingModel;
 import net.minidev.json.JSONObject;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
@@ -37,9 +35,6 @@ public class DataManagementPlanNewVersionModel implements DataModel<DmpEntity, D
     private eu.eudat.models.data.grant.GrantDMPEditorModel grant;
     private List<Organisation> organisations;
     private List<Researcher> researchers;
-    private List<UserListingModel> associatedUsers;
-    private eu.eudat.models.data.userinfo.UserInfo creator;
-    private Date created;
     private List<Dataset> datasets;
     private ProjectDMPEditorModel project;
     private FunderDMPEditorModel funder;
@@ -115,27 +110,6 @@ public class DataManagementPlanNewVersionModel implements DataModel<DmpEntity, D
         this.researchers = researchers;
     }
 
-    public List<UserListingModel> getAssociatedUsers() {
-        return associatedUsers;
-    }
-    public void setAssociatedUsers(List<UserListingModel> associatedUsers) {
-        this.associatedUsers = associatedUsers;
-    }
-
-    public UserInfo getCreator() {
-        return creator;
-    }
-    public void setCreator(UserInfo creator) {
-        this.creator = creator;
-    }
-
-    public Date getCreated() {
-        return created;
-    }
-    public void setCreated(Date created) {
-        this.created = created;
-    }
-
     public List<Dataset> getDatasets() {
         return datasets;
     }

dmp-backend/web/src/main/java/eu/eudat/models/data/invitation/Invitation.java

@@ -1,6 +1,6 @@
 package eu.eudat.models.data.invitation;
 
-import eu.eudat.models.data.userinfo.UserInfoInvitationModel;
+import eu.eudat.model.User;
 
 import java.util.List;
 import java.util.UUID;
@@ -8,7 +8,7 @@ import java.util.UUID;
 
 public class Invitation {
     private UUID dataManagementPlan;
-    private List<UserInfoInvitationModel> users;
+    private List<User> users;
     private Integer role;
 
     public UUID getDataManagementPlan() {
@@ -19,11 +19,11 @@ public class Invitation {
         this.dataManagementPlan = dataManagementPlan;
     }
 
-    public List<UserInfoInvitationModel> getUsers() {
+    public List<User> getUsers() {
         return users;
     }
 
-    public void setUsers(List<UserInfoInvitationModel> users) {
+    public void setUsers(List<User> users) {
         this.users = users;
     }
 

dmp-backend/web/src/main/java/eu/eudat/models/data/listingmodels/DataManagementPlanListingModel.java

@@ -2,6 +2,7 @@ package eu.eudat.models.data.listingmodels;
 
 import eu.eudat.data.DmpEntity;
 import eu.eudat.data.old.Grant;
+import eu.eudat.model.DmpUser;
 import eu.eudat.models.DataModel;
 import eu.eudat.models.data.urls.DatasetUrlListing;
 
@@ -22,7 +23,7 @@ public class DataManagementPlanListingModel implements DataModel<DmpEntity, Data
     private int status;
     private UUID groupId;
     private List<DatasetUrlListing> datasets;
-    private List<UserInfoListingModel> users;
+    private List<DmpUser> users;
     private Date finalizedAt;
     private Boolean isPublic;
     private Date publishedAt;
@@ -91,10 +92,10 @@ public class DataManagementPlanListingModel implements DataModel<DmpEntity, Data
         this.status = status;
     }
 
-    public List<UserInfoListingModel> getUsers() {
+    public List<DmpUser> getUsers() {
         return users;
     }
-    public void setUsers(List<UserInfoListingModel> users) {
+    public void setUsers(List<DmpUser> users) {
         this.users = users;
     }
 

dmp-backend/web/src/main/java/eu/eudat/models/data/listingmodels/DataManagementPlanOverviewModel.java

@@ -5,6 +5,7 @@ import com.fasterxml.jackson.databind.ObjectMapper;
 import eu.eudat.commons.enums.DescriptionStatus;
 import eu.eudat.commons.enums.IsActive;
 import eu.eudat.data.DmpEntity;
+import eu.eudat.model.DmpUser;
 import eu.eudat.model.doi.Doi;
 import eu.eudat.models.DataModel;
 import eu.eudat.models.data.dataset.DatasetOverviewModel;
@@ -32,7 +33,7 @@ public class DataManagementPlanOverviewModel implements DataModel<DmpEntity, Dat
     private List<DatasetOverviewModel> datasets;
     private List<AssociatedProfile> associatedProfiles;
     private List<Researcher> researchers;
-    private List<UserInfoListingModel> users;
+    private List<DmpUser> users;
     private String description;
     private boolean isPublic;
     private Date publishedAt;
@@ -130,10 +131,10 @@ public class DataManagementPlanOverviewModel implements DataModel<DmpEntity, Dat
         this.associatedProfiles = associatedProfiles;
     }
 
-    public List<UserInfoListingModel> getUsers() {
+    public List<DmpUser> getUsers() {
         return users;
     }
-    public void setUsers(List<UserInfoListingModel> users) {
+    public void setUsers(List<DmpUser> users) {
         this.users = users;
     }
 

dmp-backend/web/src/main/java/eu/eudat/models/data/listingmodels/DatasetListingModel.java

@@ -2,6 +2,7 @@ package eu.eudat.models.data.listingmodels;
 
 import eu.eudat.commons.enums.DescriptionStatus;
 import eu.eudat.data.DescriptionEntity;
+import eu.eudat.model.DmpUser;
 import eu.eudat.models.DataModel;
 import eu.eudat.models.data.datasetprofile.DatasetProfileOverviewModel;
 
@@ -23,7 +24,7 @@ public class DatasetListingModel implements DataModel<DescriptionEntity, Dataset
     private Instant finalizedAt;
     private Instant dmpPublishedAt;
     private int version;
-    private List<UserInfoListingModel> users;
+    private List<DmpUser> users;
     private Boolean isPublic;
 
     public String getId() {
@@ -118,11 +119,11 @@ public class DatasetListingModel implements DataModel<DescriptionEntity, Dataset
         this.version = version;
     }
 
-    public List<UserInfoListingModel> getUsers() {
+    public List<DmpUser> getUsers() {
         return users;
     }
 
-    public void setUsers(List<UserInfoListingModel> users) {
+    public void setUsers(List<DmpUser> users) {
         this.users = users;
     }
 

dmp-backend/web/src/main/java/eu/eudat/models/data/listingmodels/UserInfoListingModel.java

@@ -1,61 +0,0 @@
-package eu.eudat.models.data.listingmodels;
-
-import eu.eudat.commons.enums.DmpUserRole;
-import eu.eudat.data.DmpUserEntity;
-import eu.eudat.data.UserEntity;
-import eu.eudat.models.DataModel;
-
-import java.util.UUID;
-
-public class UserInfoListingModel implements DataModel<DmpUserEntity, UserInfoListingModel> {
-
-    private UUID id;
-    private String name;
-    private int role;
-
-    public UUID getId() {
-        return id;
-    }
-    public void setId(UUID id) {
-        this.id = id;
-    }
-
-    public String getName() {
-        return name;
-    }
-    public void setName(String name) {
-        this.name = name;
-    }
-
-    public int getRole() {
-        return role;
-    }
-    public void setRole(int role) {
-        this.role = role;
-    }
-
-    @Override
-    public UserInfoListingModel fromDataModel(DmpUserEntity entity) {
-//        this.id = entity.getUser().getId(); //TODO
-//        this.name = entity.getUser().getName();
-//        this.role = entity.getRole();
-//        this.email = entity.getUser().getEmail();
-        return this;
-    }
-
-    @Override
-    public DmpUserEntity toDataModel() {
-        DmpUserEntity entity = new DmpUserEntity();
-        entity.setId(this.getId());
-        entity.setRole(DmpUserRole.of((short) this.getRole()));
-        UserEntity userInfo = new UserEntity();
-        userInfo.setName(this.getName());
-//        entity.setUser(userInfo);
-        return entity;
-    }
-
-    @Override
-    public String getHint() {
-        return "UserInfoListingModel";
-    }
-}