MaDgiK-CITE
/
argos
13
0
Fork 0
Code Issues Pull Requests Projects Releases 3 Wiki Activity

Fix various issues with spring update

This commit is contained in:
George Kalampokis 2021-09-14 17:43:02 +03:00
parent a805e823e5
commit 1ae2788453
4 changed files with 48 additions and 13 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

4
dmp-backend/data/src/main/java/eu/eudat/data/entities/Grant.java
View File

@ -106,11 +106,11 @@ public class Grant implements DataEntity<Grant, UUID> {
@Column(name = "\"Definition\"", columnDefinition = "xml", nullable = true)
private String definition;
@Column(name = "\"StartDate\"", nullable = false)
@Column(name = "\"StartDate\"", nullable = true)
@Convert(converter = DateToUTCConverter.class)
private Date startdate = null;
@Column(name = "\"EndDate\"", nullable = false)
@Column(name = "\"EndDate\"", nullable = true)
@Convert(converter = DateToUTCConverter.class)
private Date enddate = null;

40
dmp-backend/web/src/main/java/eu/eudat/logic/managers/DataManagementPlanManager.java
View File

@ -151,8 +151,11 @@ public class DataManagementPlanManager {
items = null;
}
}
if (items == null) {
items = apiContext.getOperationsContext().getDatabaseRepository().getDmpDao().getWithCriteria(dataManagementPlanTableRequest.getCriteria());
}
List<Integer> roles = new LinkedList<>();
if (!dataManagementPlanTableRequest.getCriteria().isOnlyPublic()) {
if (dataManagementPlanTableRequest.getCriteria().getRole() != null)
@ -161,8 +164,11 @@ public class DataManagementPlanManager {
} else {
authItems = items;
}
if (items == null) {
totalData = authItems.count();
items = PaginationManager.applyPaging(authItems, dataManagementPlanTableRequest);
} else {
items = authItems;
}
@ -534,6 +540,10 @@ public class DataManagementPlanManager {
if (dataManagementPlan.getAssociatedUsers().size() == 0)
assignUser(newDmp, user);
UUID dmpId = newDmp.getId();
Set<UserDMP> users = new HashSet<>(databaseRepository.getUserDmpDao().asQueryable().where((builder, root) -> builder.equal(root.get("dmp").get("id"), dmpId)).toList());
newDmp.setUsers(users);
this.updateIndex(newDmp);
if (setNotification) {
@ -625,13 +635,16 @@ public class DataManagementPlanManager {
assignGrandUserIfInternal(newDmp, user);
assignFunderUserIfInternal(newDmp, user);
assignProjectUserIfInternal(newDmp, user);
if (newDmp.getGrant().getStartdate() == null) {
newDmp.getGrant().setStartdate(new Date());
}
if (newDmp.getGrant().getEnddate() == null) {
newDmp.getGrant().setEnddate(Date.from(Instant.now().plus(365, ChronoUnit.DAYS)));
}
databaseRepository.getGrantDao().createOrUpdate(newDmp.getGrant());
DMP tempDmp = databaseRepository.getDmpDao().createOrUpdate(newDmp);
newDmp.setId(tempDmp.getId());
// Assign creator.
assignUser(newDmp, user);
copyDatasets(newDmp, databaseRepository.getDatasetDao());
databaseRepository
@ -797,6 +810,12 @@ public class DataManagementPlanManager {
else {
grant.setType(Grant.GrantType.EXTERNAL.getValue());
grant.setCreationUser(null);
if (grant.getStartdate() == null) {
grant.setStartdate(new Date());
}
if (grant.getEnddate() == null) {
grant.setEnddate(Date.from(Instant.now().plus(365, ChronoUnit.DAYS)));
}
grantDao.createOrUpdate(grant);
}
}
@ -1749,7 +1768,16 @@ public class DataManagementPlanManager {
userDMP.setDmp(dmp);
userDMP.setUser(userInfo);
userDMP.setRole(role.getValue());
databaseRepository.getUserDmpDao().createOrUpdate(userDMP);
userDMP = databaseRepository.getUserDmpDao().createOrUpdate(userDMP);
logger.debug("UserDMP Id: " + userDMP.getId());
}
private boolean userExists(UserDMP userDMP, UserInfo userInfo, UserDMP.UserDMPRoles role) {
UserDMP tempUser = userDMP;
if (userDMP.getUser() == null) {
tempUser = databaseRepository.getUserDmpDao().find(userDMP.getId());
}
return tempUser.getUser().getId().equals(userInfo.getId()) && tempUser.getRole().equals(role.getValue());
}
private void clearUsers(DMP dmp) {
@ -2147,7 +2175,9 @@ public class DataManagementPlanManager {
jsonFos.flush();
}
fileSystemResource = new FileSystemResource(tempJsonFile);
addFileMapRequest = new HttpEntity<>(fileSystemResource, null);
HttpHeaders jsonHeaders = new HttpHeaders();
jsonHeaders.add(HttpHeaders.CONTENT_TYPE, MediaType.APPLICATION_OCTET_STREAM_VALUE);
addFileMapRequest = new HttpEntity<>(fileSystemResource, jsonHeaders);
String jsonFileName = jsonFile.getHeaders().get("Content-Disposition").get(0).substring(jsonFile.getHeaders().get("Content-Disposition").get(0).lastIndexOf('=') + 1);
addFileUrl = links.get("bucket") + "/" + jsonFileName + "?access_token=" + zenodoToken;
restTemplate.put(addFileUrl, addFileMapRequest);

2
dmp-backend/web/src/main/java/eu/eudat/logic/managers/DatasetManager.java
View File

@ -1095,7 +1095,7 @@ public class DatasetManager {
if (!tagNodes.isEmpty()) {
tagNodes.forEach(node -> {
JsonNode value = node.get("value");
String stringValue = value.asText().replaceAll("=", ":");
String stringValue = value.toString().replaceAll("=", ":");
JSONArray values = new JSONArray(stringValue);
if (values != null) {
values.iterator().forEachRemaining(element -> {

13
dmp-backend/web/src/main/java/eu/eudat/models/data/dmp/DataManagementPlanNewVersionModel.java
View File

@ -7,7 +7,10 @@ import eu.eudat.models.data.funder.FunderDMPEditorModel;
import eu.eudat.models.data.grant.GrantDMPEditorModel;
import eu.eudat.models.data.project.ProjectDMPEditorModel;
import eu.eudat.models.data.userinfo.UserInfo;
import eu.eudat.models.data.userinfo.UserListingModel;
import net.minidev.json.JSONObject;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import java.util.*;
import java.util.stream.Collectors;
@ -16,6 +19,8 @@ import java.util.stream.Collectors;
* Created by ikalyvas on 2/5/2018.
*/
public class DataManagementPlanNewVersionModel implements DataModel<DMP, DataManagementPlanNewVersionModel> {
private static final Logger logger = LoggerFactory.getLogger(DataManagementPlanNewVersionModel.class);
private UUID id;
private String label;
private UUID groupId;
@ -26,7 +31,7 @@ public class DataManagementPlanNewVersionModel implements DataModel<DMP, DataMan
private eu.eudat.models.data.grant.GrantDMPEditorModel grant;
private List<Organisation> organisations;
private List<Researcher> researchers;
private List<UserDMP> associatedUsers;
private List<UserListingModel> associatedUsers;
private eu.eudat.models.data.userinfo.UserInfo creator;
private Date created;
private List<Dataset> datasets;
@ -104,10 +109,10 @@ public class DataManagementPlanNewVersionModel implements DataModel<DMP, DataMan
this.researchers = researchers;
}
public List<UserDMP> getAssociatedUsers() {
public List<UserListingModel> getAssociatedUsers() {
return associatedUsers;
}
public void setAssociatedUsers(List<UserDMP> associatedUsers) {
public void setAssociatedUsers(List<UserListingModel> associatedUsers) {
this.associatedUsers = associatedUsers;
}
@ -163,7 +168,7 @@ public class DataManagementPlanNewVersionModel implements DataModel<DMP, DataMan
public DMP toDataModel() throws Exception {
DMP entity = new DMP();
entity.setId(this.id);
entity.setUsers(new HashSet<>(new ArrayList<>(this.associatedUsers)));
// entity.setUsers(new HashSet<>(new ArrayList<>(this.associatedUsers)));
entity.setDescription(this.description);
entity.setStatus((short) this.status);
entity.setGroupId(this.groupId == null ? UUID.randomUUID() : this.groupId);