326 lines
9.8 KiB
Java
326 lines
9.8 KiB
Java
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package eu.dnetlib.dhp.actionmanager.project;
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import java.io.IOException;
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import java.nio.file.Files;
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import java.nio.file.Path;
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import java.util.List;
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import org.apache.commons.io.FileUtils;
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import org.apache.hadoop.io.Text;
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import org.apache.spark.SparkConf;
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import org.apache.spark.api.java.JavaRDD;
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import org.apache.spark.api.java.JavaSparkContext;
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import org.apache.spark.sql.Dataset;
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import org.apache.spark.sql.Encoders;
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import org.apache.spark.sql.Row;
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import org.apache.spark.sql.SparkSession;
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import org.junit.jupiter.api.AfterAll;
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import org.junit.jupiter.api.Assertions;
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import org.junit.jupiter.api.BeforeAll;
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import org.junit.jupiter.api.Test;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import eu.dnetlib.dhp.schema.action.AtomicAction;
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import eu.dnetlib.dhp.schema.oaf.Project;
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public class SparkUpdateProjectTest {
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private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
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private static final ClassLoader cl = eu.dnetlib.dhp.actionmanager.project.SparkUpdateProjectTest.class
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.getClassLoader();
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private static SparkSession spark;
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private static Path workingDir;
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private static final Logger log = LoggerFactory
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.getLogger(eu.dnetlib.dhp.actionmanager.project.SparkUpdateProjectTest.class);
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@BeforeAll
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public static void beforeAll() throws IOException {
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workingDir = Files
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.createTempDirectory(eu.dnetlib.dhp.actionmanager.project.SparkUpdateProjectTest.class.getSimpleName());
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log.info("using work dir {}", workingDir);
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SparkConf conf = new SparkConf();
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conf.setAppName(eu.dnetlib.dhp.actionmanager.project.SparkUpdateProjectTest.class.getSimpleName());
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conf.setMaster("local[*]");
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conf.set("spark.driver.host", "localhost");
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conf.set("hive.metastore.local", "true");
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conf.set("spark.ui.enabled", "false");
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conf.set("spark.sql.warehouse.dir", workingDir.toString());
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conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString());
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spark = SparkSession
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.builder()
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.appName(SparkUpdateProjectTest.class.getSimpleName())
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.config(conf)
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.getOrCreate();
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}
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@AfterAll
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public static void afterAll() throws IOException {
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FileUtils.deleteDirectory(workingDir.toFile());
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spark.stop();
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}
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@Test
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public void numberDistinctProgrammeTest() throws Exception {
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SparkAtomicActionJob
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.main(
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new String[] {
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"-isSparkSessionManaged",
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Boolean.FALSE.toString(),
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"-programmePath",
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getClass()
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.getResource(
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"/eu/dnetlib/dhp/actionmanager/project/preparedProgramme_whole.json.gz")
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.getPath(),
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"-projectPath",
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getClass().getResource("/eu/dnetlib/dhp/actionmanager/project/prepared_projects.json").getPath(),
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"-topicPath",
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getClass().getResource("/eu/dnetlib/dhp/actionmanager/project/topic.json.gz").getPath(),
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"-outputPath",
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workingDir.toString() + "/actionSet"
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});
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final JavaSparkContext sc = new JavaSparkContext(spark.sparkContext());
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JavaRDD<Project> tmp = sc
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.sequenceFile(workingDir.toString() + "/actionSet", Text.class, Text.class)
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.map(value -> OBJECT_MAPPER.readValue(value._2().toString(), AtomicAction.class))
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.map(aa -> ((Project) aa.getPayload()));
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Assertions.assertEquals(15, tmp.count());
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Dataset<Project> verificationDataset = spark.createDataset(tmp.rdd(), Encoders.bean(Project.class));
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verificationDataset.createOrReplaceTempView("project");
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Dataset<Row> execverification = spark
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.sql(
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"SELECT id, class classification, h2020topiccode, h2020topicdescription FROM project LATERAL VIEW EXPLODE(h2020classification) c as class ");
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Assertions
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.assertEquals(
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"H2020-EU.3.4.7.",
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execverification
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.filter("id = '40|corda__h2020::2c7298913008865ba784e5c1350a0aa5'")
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.select("classification.h2020Programme.code")
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.collectAsList()
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.get(0)
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.getString(0));
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Assertions
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.assertEquals(
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"SESAR JU",
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execverification
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.filter("id = '40|corda__h2020::2c7298913008865ba784e5c1350a0aa5'")
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.select("classification.h2020Programme.description")
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.collectAsList()
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.get(0)
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.getString(0));
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Assertions
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.assertEquals(
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"Societal Challenges",
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execverification
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.filter("id = '40|corda__h2020::2c7298913008865ba784e5c1350a0aa5'")
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.select("classification.level1")
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.collectAsList()
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.get(0)
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.getString(0));
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Assertions
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.assertEquals(
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"Transport",
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execverification
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.filter("id = '40|corda__h2020::2c7298913008865ba784e5c1350a0aa5'")
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.select("classification.level2")
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.collectAsList()
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.get(0)
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.getString(0));
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Assertions
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.assertEquals(
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"SESAR JU",
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execverification
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.filter("id = '40|corda__h2020::2c7298913008865ba784e5c1350a0aa5'")
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.select("classification.level3")
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.collectAsList()
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.get(0)
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.getString(0));
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Assertions
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.assertEquals(
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"Societal challenges | Smart, Green And Integrated Transport | SESAR JU",
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execverification
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.filter("id = '40|corda__h2020::2c7298913008865ba784e5c1350a0aa5'")
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.select("classification.classification")
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.collectAsList()
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.get(0)
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.getString(0));
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Assertions
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.assertEquals(
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"SESAR-ER4-31-2019",
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execverification
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.filter("id = '40|corda__h2020::2c7298913008865ba784e5c1350a0aa5'")
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.select("h2020topiccode")
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.collectAsList()
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.get(0)
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.getString(0));
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Assertions
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.assertEquals(
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"U-space",
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execverification
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.filter("id = '40|corda__h2020::2c7298913008865ba784e5c1350a0aa5'")
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.select("h2020topicdescription")
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.collectAsList()
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.get(0)
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.getString(0));
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Assertions
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.assertEquals(
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"H2020-EU.1.3.2.",
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execverification
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.filter("id = '40|corda__h2020::1a1f235fdd06ef14790baec159aa1202'")
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.select("classification.h2020Programme.code")
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.collectAsList()
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.get(0)
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.getString(0));
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Assertions
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.assertEquals(
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"MSCA Mobility",
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execverification
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.filter("id = '40|corda__h2020::1a1f235fdd06ef14790baec159aa1202'")
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.select("classification.h2020Programme.description")
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.collectAsList()
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.get(0)
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.getString(0));
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Assertions
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.assertEquals(
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"Excellent Science",
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execverification
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.filter("id = '40|corda__h2020::1a1f235fdd06ef14790baec159aa1202'")
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.select("classification.level1")
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.collectAsList()
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.get(0)
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.getString(0));
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Assertions
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.assertEquals(
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"Marie-Sklodowska-Curie Actions",
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execverification
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.filter("id = '40|corda__h2020::1a1f235fdd06ef14790baec159aa1202'")
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.select("classification.level2")
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.collectAsList()
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.get(0)
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.getString(0));
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Assertions
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.assertEquals(
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"MSCA Mobility",
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execverification
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.filter("id = '40|corda__h2020::1a1f235fdd06ef14790baec159aa1202'")
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.select("classification.level3")
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.collectAsList()
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.get(0)
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.getString(0));
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Assertions
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.assertEquals(
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"Excellent science | Marie Skłodowska-Curie Actions | Nurturing excellence by means of cross-border and cross-sector mobility",
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execverification
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.filter("id = '40|corda__h2020::1a1f235fdd06ef14790baec159aa1202'")
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.select("classification.classification")
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.collectAsList()
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.get(0)
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.getString(0));
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Assertions
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.assertEquals(
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"MSCA-IF-2019",
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execverification
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.filter("id = '40|corda__h2020::1a1f235fdd06ef14790baec159aa1202'")
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.select("h2020topiccode")
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.collectAsList()
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.get(0)
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.getString(0));
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Assertions
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.assertEquals(
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"Individual Fellowships",
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execverification
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.filter("id = '40|corda__h2020::1a1f235fdd06ef14790baec159aa1202'")
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.select("h2020topicdescription")
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.collectAsList()
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.get(0)
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.getString(0));
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Assertions
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.assertTrue(
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execverification
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.filter("id = '40|corda__h2020::a657c271769fec90b60c1f2dbc25f4d5'")
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.select("classification.h2020Programme.code")
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.collectAsList()
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.get(0)
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.getString(0)
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.equals("H2020-EU.2.1.4.") ||
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execverification
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.filter("id = '40|corda__h2020::a657c271769fec90b60c1f2dbc25f4d5'")
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.select("classification.h2020Programme.code")
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.collectAsList()
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.get(1)
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.getString(0)
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.equals("H2020-EU.2.1.4."));
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Assertions
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.assertTrue(
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execverification
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.filter("id = '40|corda__h2020::a657c271769fec90b60c1f2dbc25f4d5'")
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.select("classification.h2020Programme.code")
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.collectAsList()
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.get(0)
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.getString(0)
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.equals("H2020-EU.3.2.6.") ||
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execverification
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.filter("id = '40|corda__h2020::a657c271769fec90b60c1f2dbc25f4d5'")
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.select("classification.h2020Programme.code")
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.collectAsList()
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.get(1)
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.getString(0)
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.equals("H2020-EU.3.2.6."));
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Assertions
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.assertEquals(
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"Biotechnology",
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execverification
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.filter(
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"id = '40|corda__h2020::a657c271769fec90b60c1f2dbc25f4d5' and classification.h2020Programme.code = 'H2020-EU.2.1.4.'")
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.select("classification.h2020Programme.description")
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.collectAsList()
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.get(0)
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.getString(0));
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Assertions
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.assertEquals(
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"Bio-based Industries Joint Technology Initiative (BBI-JTI)",
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execverification
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.filter(
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"id = '40|corda__h2020::a657c271769fec90b60c1f2dbc25f4d5' and classification.h2020Programme.code = 'H2020-EU.3.2.6.'")
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.select("classification.h2020Programme.description")
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.collectAsList()
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.get(0)
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.getString(0));
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Assertions
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.assertEquals(
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"BBI-2019-SO3-D4",
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execverification
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.filter("id = '40|corda__h2020::a657c271769fec90b60c1f2dbc25f4d5'")
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.select("h2020topiccode")
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.collectAsList()
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.get(0)
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.getString(0));
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Assertions
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.assertEquals(
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"Demonstrate bio-based pesticides and/or biostimulant agents for sustainable increase in agricultural productivity",
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execverification
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.filter("id = '40|corda__h2020::a657c271769fec90b60c1f2dbc25f4d5'")
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.select("h2020topicdescription")
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.collectAsList()
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.get(0)
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.getString(0));
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}
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}
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