package eu.dnetlib.dhp.actionmanager.project; import java.io.IOException; import java.nio.file.Files; import java.nio.file.Path; import java.util.List; import org.apache.commons.io.FileUtils; import org.apache.hadoop.io.Text; import org.apache.spark.SparkConf; import org.apache.spark.api.java.JavaRDD; import org.apache.spark.api.java.JavaSparkContext; import org.apache.spark.sql.Dataset; import org.apache.spark.sql.Encoders; import org.apache.spark.sql.Row; import org.apache.spark.sql.SparkSession; import org.junit.jupiter.api.AfterAll; import org.junit.jupiter.api.Assertions; import org.junit.jupiter.api.BeforeAll; import org.junit.jupiter.api.Test; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import com.fasterxml.jackson.databind.ObjectMapper; import eu.dnetlib.dhp.schema.action.AtomicAction; import eu.dnetlib.dhp.schema.oaf.Project; public class SparkUpdateProjectTest { private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper(); private static final ClassLoader cl = eu.dnetlib.dhp.actionmanager.project.SparkUpdateProjectTest.class .getClassLoader(); private static SparkSession spark; private static Path workingDir; private static final Logger log = LoggerFactory .getLogger(eu.dnetlib.dhp.actionmanager.project.SparkUpdateProjectTest.class); @BeforeAll public static void beforeAll() throws IOException { workingDir = Files .createTempDirectory(eu.dnetlib.dhp.actionmanager.project.SparkUpdateProjectTest.class.getSimpleName()); log.info("using work dir {}", workingDir); SparkConf conf = new SparkConf(); conf.setAppName(eu.dnetlib.dhp.actionmanager.project.SparkUpdateProjectTest.class.getSimpleName()); conf.setMaster("local[*]"); conf.set("spark.driver.host", "localhost"); conf.set("hive.metastore.local", "true"); conf.set("spark.ui.enabled", "false"); conf.set("spark.sql.warehouse.dir", workingDir.toString()); conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString()); spark = SparkSession .builder() .appName(SparkUpdateProjectTest.class.getSimpleName()) .config(conf) .getOrCreate(); } @AfterAll public static void afterAll() throws IOException { FileUtils.deleteDirectory(workingDir.toFile()); spark.stop(); } @Test public void numberDistinctProgrammeTest() throws Exception { SparkAtomicActionJob .main( new String[] { "-isSparkSessionManaged", Boolean.FALSE.toString(), "-programmePath", getClass() .getResource( "/eu/dnetlib/dhp/actionmanager/project/preparedProgramme_whole.json.gz") .getPath(), "-projectPath", getClass().getResource("/eu/dnetlib/dhp/actionmanager/project/prepared_projects.json").getPath(), "-topicPath", getClass().getResource("/eu/dnetlib/dhp/actionmanager/project/topic.json.gz").getPath(), "-outputPath", workingDir.toString() + "/actionSet" }); final JavaSparkContext sc = new JavaSparkContext(spark.sparkContext()); JavaRDD tmp = sc .sequenceFile(workingDir.toString() + "/actionSet", Text.class, Text.class) .map(value -> OBJECT_MAPPER.readValue(value._2().toString(), AtomicAction.class)) .map(aa -> ((Project) aa.getPayload())); Assertions.assertEquals(15, tmp.count()); Dataset verificationDataset = spark.createDataset(tmp.rdd(), Encoders.bean(Project.class)); verificationDataset.createOrReplaceTempView("project"); Dataset execverification = spark .sql( "SELECT id, class classification, h2020topiccode, h2020topicdescription FROM project LATERAL VIEW EXPLODE(h2020classification) c as class "); Assertions .assertEquals( "H2020-EU.3.4.7.", execverification .filter("id = '40|corda__h2020::2c7298913008865ba784e5c1350a0aa5'") .select("classification.h2020Programme.code") .collectAsList() .get(0) .getString(0)); Assertions .assertEquals( "SESAR JU", execverification .filter("id = '40|corda__h2020::2c7298913008865ba784e5c1350a0aa5'") .select("classification.h2020Programme.description") .collectAsList() .get(0) .getString(0)); Assertions .assertEquals( "Societal Challenges", execverification .filter("id = '40|corda__h2020::2c7298913008865ba784e5c1350a0aa5'") .select("classification.level1") .collectAsList() .get(0) .getString(0)); Assertions .assertEquals( "Transport", execverification .filter("id = '40|corda__h2020::2c7298913008865ba784e5c1350a0aa5'") .select("classification.level2") .collectAsList() .get(0) .getString(0)); Assertions .assertEquals( "SESAR JU", execverification .filter("id = '40|corda__h2020::2c7298913008865ba784e5c1350a0aa5'") .select("classification.level3") .collectAsList() .get(0) .getString(0)); Assertions .assertEquals( "Societal challenges | Smart, Green And Integrated Transport | SESAR JU", execverification .filter("id = '40|corda__h2020::2c7298913008865ba784e5c1350a0aa5'") .select("classification.classification") .collectAsList() .get(0) .getString(0)); Assertions .assertEquals( "SESAR-ER4-31-2019", execverification .filter("id = '40|corda__h2020::2c7298913008865ba784e5c1350a0aa5'") .select("h2020topiccode") .collectAsList() .get(0) .getString(0)); Assertions .assertEquals( "U-space", execverification .filter("id = '40|corda__h2020::2c7298913008865ba784e5c1350a0aa5'") .select("h2020topicdescription") .collectAsList() .get(0) .getString(0)); Assertions .assertEquals( "H2020-EU.1.3.2.", execverification .filter("id = '40|corda__h2020::1a1f235fdd06ef14790baec159aa1202'") .select("classification.h2020Programme.code") .collectAsList() .get(0) .getString(0)); Assertions .assertEquals( "MSCA Mobility", execverification .filter("id = '40|corda__h2020::1a1f235fdd06ef14790baec159aa1202'") .select("classification.h2020Programme.description") .collectAsList() .get(0) .getString(0)); Assertions .assertEquals( "Excellent Science", execverification .filter("id = '40|corda__h2020::1a1f235fdd06ef14790baec159aa1202'") .select("classification.level1") .collectAsList() .get(0) .getString(0)); Assertions .assertEquals( "Marie-Sklodowska-Curie Actions", execverification .filter("id = '40|corda__h2020::1a1f235fdd06ef14790baec159aa1202'") .select("classification.level2") .collectAsList() .get(0) .getString(0)); Assertions .assertEquals( "MSCA Mobility", execverification .filter("id = '40|corda__h2020::1a1f235fdd06ef14790baec159aa1202'") .select("classification.level3") .collectAsList() .get(0) .getString(0)); Assertions .assertEquals( "Excellent science | Marie Skłodowska-Curie Actions | Nurturing excellence by means of cross-border and cross-sector mobility", execverification .filter("id = '40|corda__h2020::1a1f235fdd06ef14790baec159aa1202'") .select("classification.classification") .collectAsList() .get(0) .getString(0)); Assertions .assertEquals( "MSCA-IF-2019", execverification .filter("id = '40|corda__h2020::1a1f235fdd06ef14790baec159aa1202'") .select("h2020topiccode") .collectAsList() .get(0) .getString(0)); Assertions .assertEquals( "Individual Fellowships", execverification .filter("id = '40|corda__h2020::1a1f235fdd06ef14790baec159aa1202'") .select("h2020topicdescription") .collectAsList() .get(0) .getString(0)); Assertions .assertTrue( execverification .filter("id = '40|corda__h2020::a657c271769fec90b60c1f2dbc25f4d5'") .select("classification.h2020Programme.code") .collectAsList() .get(0) .getString(0) .equals("H2020-EU.2.1.4.") || execverification .filter("id = '40|corda__h2020::a657c271769fec90b60c1f2dbc25f4d5'") .select("classification.h2020Programme.code") .collectAsList() .get(1) .getString(0) .equals("H2020-EU.2.1.4.")); Assertions .assertTrue( execverification .filter("id = '40|corda__h2020::a657c271769fec90b60c1f2dbc25f4d5'") .select("classification.h2020Programme.code") .collectAsList() .get(0) .getString(0) .equals("H2020-EU.3.2.6.") || execverification .filter("id = '40|corda__h2020::a657c271769fec90b60c1f2dbc25f4d5'") .select("classification.h2020Programme.code") .collectAsList() .get(1) .getString(0) .equals("H2020-EU.3.2.6.")); Assertions .assertEquals( "Biotechnology", execverification .filter( "id = '40|corda__h2020::a657c271769fec90b60c1f2dbc25f4d5' and classification.h2020Programme.code = 'H2020-EU.2.1.4.'") .select("classification.h2020Programme.description") .collectAsList() .get(0) .getString(0)); Assertions .assertEquals( "Bio-based Industries Joint Technology Initiative (BBI-JTI)", execverification .filter( "id = '40|corda__h2020::a657c271769fec90b60c1f2dbc25f4d5' and classification.h2020Programme.code = 'H2020-EU.3.2.6.'") .select("classification.h2020Programme.description") .collectAsList() .get(0) .getString(0)); Assertions .assertEquals( "BBI-2019-SO3-D4", execverification .filter("id = '40|corda__h2020::a657c271769fec90b60c1f2dbc25f4d5'") .select("h2020topiccode") .collectAsList() .get(0) .getString(0)); Assertions .assertEquals( "Demonstrate bio-based pesticides and/or biostimulant agents for sustainable increase in agricultural productivity", execverification .filter("id = '40|corda__h2020::a657c271769fec90b60c1f2dbc25f4d5'") .select("h2020topicdescription") .collectAsList() .get(0) .getString(0)); } }