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8172_impact_indicators_workflow #284

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miriam.baglioni merged 49 commits from 8172_impact_indicators_workflow into beta 2023-08-14 15:50:48 +02:00
Conversation 7 Commits 49 Files Changed 23 +55 -2
2 changed files with 55 additions and 2 deletions
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6
dhp-workflows/dhp-impact-indicators/src/main/resources/job.properties
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@ -63,6 +63,9 @@ oozieWorkflowPath=user/ilias.kanellos/workflow_example/
# The directory where the workflow data is/should be stored
workflowDataDir=user/ilias.kanellos/ranking_workflow
# Directory where json data containing scores will be output
bipScorePath=${workflowDataDir}/openaire_universe_scores/
# Directory where dataframes are checkpointed
checkpointDir=${nameNode}/${workflowDataDir}/check/
@ -84,3 +87,6 @@ wfAppPath=${nameNode}/${oozieWorkflowPath}
# The following is needed as a property of a workflow
oozie.wf.application.path=${wfAppPath}
# Path where the final output should be?
actionSetOutputPath=${workflowDataDir}/bip_actionsets/

51
dhp-workflows/dhp-impact-indicators/src/main/resources/workflow.xml
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@ -552,11 +552,50 @@
</spark>
<!-- Do this after finishing okay -->
<ok to="end" />
<ok to="deleteOutputPathForActionSet" />
<!-- Go there if we have an error -->
<error to="map-scores-fail" />
</action>
</action>
<action name="deleteOutputPathForActionSet">
<fs>
<delete path="${actionSetOutputPath}"/>
<mkdir path="${actionSetOutputPath}"/>
<!--
<delete path="${workingDir}"/>
<mkdir path="${workingDir}"/>
-->
</fs>
<ok to="createActionSet"/>
<error to="actionset-delete-fail"/>
</action>
<action name="createActionSet">
<spark xmlns="uri:oozie:spark-action:0.2">
<master>yarn</master>
<mode>cluster</mode>
<name>Produces the atomic action with the bip finder scores for publications</name>
<class>eu.dnetlib.dhp.actionmanager.bipfinder.SparkAtomicActionScoreJob</class>
<jar>dhp-aggregation-${projectVersion}.jar</jar>
<spark-opts>
--executor-memory=${sparkExecutorMemory}
--executor-cores=${sparkExecutorCores}
--driver-memory=${sparkDriverMemory}
--conf spark.extraListeners=${spark2ExtraListeners}
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
</spark-opts>
<arg>--inputPath</arg><arg>${bipScorePath}</arg>
<arg>--outputPath</arg><arg>${actionSetOutputPath}</arg>
</spark>
<ok to="end"/>
<error to="actionset-creation-fail"/>
</action>
<!-- TODO: end the workflow-->
@ -597,4 +636,12 @@
<message>Mapping scores to DOIs failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
</kill>
<kill name="actionset-delete-fail">
<message>Deleting output path for actionsets failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
</kill>
<kill name="actionset-creation-fail">
<message>ActionSet creation failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
</kill>
</workflow-app>