PR: Bypass Action Set #157
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package eu.dnetlib.dhp.bypassactionset;
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import eu.dnetlib.dhp.application.ArgumentApplicationParser;
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import eu.dnetlib.dhp.bypassactionset.model.FOSDataModel;
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import org.apache.commons.io.IOUtils;
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import org.apache.spark.SparkConf;
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import org.apache.spark.api.java.function.FlatMapFunction;
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import org.apache.spark.sql.Dataset;
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import org.apache.spark.sql.Encoders;
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import org.apache.spark.sql.SaveMode;
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import org.apache.spark.sql.SparkSession;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import java.io.Serializable;
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import java.util.ArrayList;
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import java.util.Arrays;
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import java.util.List;
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import static eu.dnetlib.dhp.PropagationConstant.*;
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import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
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public class DistributeFOSSparkJob implements Serializable {
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private static final Logger log = LoggerFactory.getLogger(DistributeFOSSparkJob.class);
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public static void main(String[] args) throws Exception {
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String jsonConfiguration = IOUtils
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.toString(
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DistributeFOSSparkJob.class
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.getResourceAsStream(
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"/eu/dnetlib/dhp/bypassactionset/distribute_fos_parameters.json"));
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final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration);
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parser.parseArgument(args);
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Boolean isSparkSessionManaged = isSparkSessionManaged(parser);
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log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
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String sourcePath = parser.get("sourcePath");
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log.info("sourcePath: {}", sourcePath);
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final String outputPath = parser.get("outputPath");
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log.info("outputPath: {}", outputPath);
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SparkConf conf = new SparkConf();
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runWithSparkSession(
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conf,
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isSparkSessionManaged,
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spark -> {
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removeOutputDir(spark, outputPath);
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distributeFOSdois(
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spark,
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sourcePath,
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outputPath
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);
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});
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}
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private static void distributeFOSdois(SparkSession spark, String sourcePath, String outputPath) {
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Dataset<FOSDataModel> fosDataset = readPath(spark, sourcePath, FOSDataModel.class);
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fosDataset.flatMap((FlatMapFunction<FOSDataModel, FOSDataModel>) v -> {
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List<FOSDataModel> fosList = new ArrayList<>();
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final String level1 = v.getLevel1();
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final String level2 = v.getLevel2();
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final String level3 = v.getLevel3();
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Arrays.stream(v.getDoi().split("\u0002")).forEach(d -> fosList.add(FOSDataModel.newInstance(d, level1, level2, level3)));
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return fosList.iterator();
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}, Encoders.bean(FOSDataModel.class))
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.write()
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.mode(SaveMode.Overwrite)
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.option("compression","gzip")
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.json(outputPath);
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}
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}
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@ -0,0 +1,79 @@
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package eu.dnetlib.dhp.bypassactionset;
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import eu.dnetlib.dhp.application.ArgumentApplicationParser;
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import eu.dnetlib.dhp.common.collection.GetCSV;
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import org.apache.commons.io.IOUtils;
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import org.apache.hadoop.conf.Configuration;
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import org.apache.hadoop.fs.FileSystem;
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import org.apache.hadoop.fs.Path;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import java.io.*;
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import java.util.Objects;
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import java.util.Optional;
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public class GetFOSData implements Serializable {
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private static final Logger log = LoggerFactory.getLogger(GetFOSData.class);
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public static final char DEFAULT_DELIMITER = '\t';
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public static void main(final String[] args) throws Exception {
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final ArgumentApplicationParser parser = new ArgumentApplicationParser(
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IOUtils
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.toString(
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Objects
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.requireNonNull(
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GetFOSData.class
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.getResourceAsStream(
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"/eu/dnetlib/dhp/bypassactionset/get_fos_parameters.json"))));
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parser.parseArgument(args);
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//the path where the original fos csv file is stored
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final String inputPath = parser.get("inputPath");
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log.info("inputPath {}", inputPath);
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//the path where to put the file as json
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final String outputFile = parser.get("outputFile");
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log.info("outputFile {}", outputFile);
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final String hdfsNameNode = parser.get("hdfsNameNode");
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log.info("hdfsNameNode {}", hdfsNameNode);
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final String classForName = parser.get("classForName");
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log.info("classForName {}", classForName);
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final char delimiter = Optional
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.ofNullable(parser.get("delimiter"))
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.map(s -> s.charAt(0))
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.orElse(DEFAULT_DELIMITER);
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log.info("delimiter {}", delimiter);
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Configuration conf = new Configuration();
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conf.set("fs.defaultFS", hdfsNameNode);
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FileSystem fileSystem = FileSystem.get(conf);
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new GetFOSData().doRewrite(inputPath, outputFile, classForName, delimiter, fileSystem);
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}
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public void doRewrite(String inputPath, String outputFile, String classForName, char delimiter, FileSystem fs)
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throws IOException, ClassNotFoundException{
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//reads the csv and writes it as its json equivalent
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try (InputStreamReader reader = new InputStreamReader(fs.open(new Path (inputPath)))) {
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GetCSV.getCsv(fs, reader, outputFile, classForName, delimiter);
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}
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}
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}
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@ -0,0 +1,28 @@
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package eu.dnetlib.dhp.bypassactionset.model;
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import java.io.Serializable;
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import java.util.ArrayList;
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import java.util.HashMap;
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import java.util.List;
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/**
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* Class that maps the model of the bipFinder! input data.
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* Only needed for deserialization purposes
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*/
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public class BipDeserialize extends HashMap<String, List<Score>> implements Serializable {
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public BipDeserialize() {
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super();
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}
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public List<Score> get(String key) {
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if (super.get(key) == null) {
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return new ArrayList<>();
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}
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return super.get(key);
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}
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}
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package eu.dnetlib.dhp.bypassactionset.model;
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import com.opencsv.bean.CsvBindByPosition;
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import java.io.Serializable;
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public class FOSDataModel implements Serializable {
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@CsvBindByPosition(position = 1)
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// @CsvBindByName(column = "doi")
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private String doi;
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@CsvBindByPosition(position = 2)
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// @CsvBindByName(column = "level1")
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private String level1;
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@CsvBindByPosition(position = 3)
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// @CsvBindByName(column = "level2")
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private String level2;
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@CsvBindByPosition(position = 4)
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// @CsvBindByName(column = "level3")
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private String level3;
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public FOSDataModel() {
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}
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public FOSDataModel(String doi, String level1, String level2, String level3) {
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this.doi = doi;
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this.level1 = level1;
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this.level2 = level2;
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this.level3 = level3;
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}
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public static FOSDataModel newInstance(String d, String level1, String level2, String level3) {
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return new FOSDataModel(d, level1, level2, level3);
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}
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public String getDoi() {
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return doi;
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}
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public void setDoi(String doi) {
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this.doi = doi;
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}
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public String getLevel1() {
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return level1;
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}
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public void setLevel1(String level1) {
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this.level1 = level1;
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}
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public String getLevel2() {
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return level2;
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}
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public void setLevel2(String level2) {
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this.level2 = level2;
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}
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public String getLevel3() {
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return level3;
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}
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public void setLevel3(String level3) {
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this.level3 = level3;
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}
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}
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package eu.dnetlib.dhp.bypassactionset.model;
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import java.io.Serializable;
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public class KeyValue implements Serializable {
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private String key;
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private String value;
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public String getKey() {
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return key;
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}
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public void setKey(String key) {
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this.key = key;
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}
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public String getValue() {
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return value;
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}
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public void setValue(String value) {
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this.value = value;
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}
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}
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package eu.dnetlib.dhp.bypassactionset.model;
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import java.io.Serializable;
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import java.util.List;
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/**
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* represents the score in the input file
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*/
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public class Score implements Serializable {
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private String id;
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private List<KeyValue> unit;
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public String getId() {
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return id;
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}
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public void setId(String id) {
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this.id = id;
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}
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public List<KeyValue> getUnit() {
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return unit;
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}
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public void setUnit(List<KeyValue> unit) {
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this.unit = unit;
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}
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}
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@ -0,0 +1,21 @@
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[
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{
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"paramName":"s",
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"paramLongName":"sourcePath",
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"paramDescription": "the path of the sequencial file to read",
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"paramRequired": true
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},
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{
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"paramName":"out",
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"paramLongName":"outputPath",
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"paramDescription": "the output path",
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"paramRequired": true
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},
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{
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"paramName": "ssm",
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"paramLongName": "isSparkSessionManaged",
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"paramDescription": "true if the spark session is managed, false otherwise",
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"paramRequired": false
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}
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]
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@ -0,0 +1,27 @@
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[
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{
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"paramName":"s",
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"paramLongName":"sourcePath",
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"paramDescription": "the path of the sequencial file to read",
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"paramRequired": true
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},
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{
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"paramName":"out",
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"paramLongName":"outputPath",
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"paramDescription": "the output path",
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"paramRequired": true
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},
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||||||
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|
||||||
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{
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||||||
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"paramName": "ssm",
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"paramLongName": "isSparkSessionManaged",
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||||||
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"paramDescription": "true if the spark session is managed, false otherwise",
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||||||
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"paramRequired": false
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||||||
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},
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||||||
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{
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||||||
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"paramName": "hnn",
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"paramLongName": "hdfsNameNode",
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"paramDescription": "the path used to store the HostedByMap",
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"paramRequired": true
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||||||
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}
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||||||
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]
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@ -0,0 +1,332 @@
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package eu.dnetlib.dhp.bypassactionset;
|
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|
|
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import com.fasterxml.jackson.databind.ObjectMapper;
|
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import eu.dnetlib.dhp.bypassactionset.model.FOSDataModel;
|
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import eu.dnetlib.dhp.common.collection.CollectorException;
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import eu.dnetlib.dhp.countrypropagation.CountryPropagationJobTest;
|
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import org.apache.commons.io.FileUtils;
|
||||||
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import org.apache.hadoop.conf.Configuration;
|
||||||
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import org.apache.hadoop.fs.FileSystem;
|
||||||
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import org.apache.hadoop.fs.LocalFileSystem;
|
||||||
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|
||||||
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import java.nio.file.Path;
|
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import org.apache.spark.SparkConf;
|
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|
import org.apache.spark.api.java.JavaRDD;
|
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import org.apache.spark.api.java.JavaSparkContext;
|
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import org.apache.spark.sql.SparkSession;
|
||||||
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import org.junit.jupiter.api.AfterAll;
|
||||||
|
import org.junit.jupiter.api.BeforeAll;
|
||||||
|
import org.junit.jupiter.api.Test;
|
||||||
|
import org.slf4j.Logger;
|
||||||
|
import org.slf4j.LoggerFactory;
|
||||||
|
|
||||||
|
import java.io.BufferedReader;
|
||||||
|
import java.io.IOException;
|
||||||
|
import java.io.InputStreamReader;
|
||||||
|
import java.nio.file.Files;
|
||||||
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|
||||||
|
import static org.junit.jupiter.api.Assertions.assertEquals;
|
||||||
|
import static org.junit.jupiter.api.Assertions.assertTrue;
|
||||||
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|
||||||
|
public class GetFOSTest {
|
||||||
|
private static final Logger log = LoggerFactory.getLogger(GetFOSTest.class);
|
||||||
|
|
||||||
|
private static Path workingDir;
|
||||||
|
private static SparkSession spark;
|
||||||
|
private static LocalFileSystem fs;
|
||||||
|
private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
|
||||||
|
|
||||||
|
@BeforeAll
|
||||||
|
public static void beforeAll() throws IOException {
|
||||||
|
workingDir = Files.createTempDirectory(CountryPropagationJobTest.class.getSimpleName());
|
||||||
|
|
||||||
|
fs = FileSystem.getLocal(new Configuration());
|
||||||
|
log.info("using work dir {}", workingDir);
|
||||||
|
|
||||||
|
SparkConf conf = new SparkConf();
|
||||||
|
conf.setAppName(GetFOSTest.class.getSimpleName());
|
||||||
|
|
||||||
|
conf.setMaster("local[*]");
|
||||||
|
conf.set("spark.driver.host", "localhost");
|
||||||
|
conf.set("hive.metastore.local", "true");
|
||||||
|
conf.set("spark.ui.enabled", "false");
|
||||||
|
conf.set("spark.sql.warehouse.dir", workingDir.toString());
|
||||||
|
conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString());
|
||||||
|
|
||||||
|
spark = SparkSession
|
||||||
|
.builder()
|
||||||
|
.appName(CountryPropagationJobTest.class.getSimpleName())
|
||||||
|
.config(conf)
|
||||||
|
.getOrCreate();
|
||||||
|
}
|
||||||
|
@AfterAll
|
||||||
|
public static void afterAll() throws IOException {
|
||||||
|
FileUtils.deleteDirectory(workingDir.toFile());
|
||||||
|
spark.stop();
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
@Test
|
||||||
|
void getFOSFileTest() throws CollectorException, IOException, ClassNotFoundException {
|
||||||
|
|
||||||
|
final String sourcePath = getClass()
|
||||||
|
.getResource("/eu/dnetlib/dhp/bypassactionset/fos/h2020_fos_sbs.csv")
|
||||||
|
.getPath();
|
||||||
|
final String outputPath = workingDir.toString() + "/fos.json";
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
new GetFOSData()
|
||||||
|
.doRewrite(sourcePath, outputPath, "eu.dnetlib.dhp.bypassactionset.FOSDataModel", '\t',fs );
|
||||||
|
|
||||||
|
BufferedReader in = new BufferedReader(new InputStreamReader(fs.open(new org.apache.hadoop.fs.Path(outputPath))));
|
||||||
|
|
||||||
|
String line;
|
||||||
|
int count = 0;
|
||||||
|
while ((line = in.readLine()) != null) {
|
||||||
|
FOSDataModel fos = new ObjectMapper().readValue(line, FOSDataModel.class);
|
||||||
|
|
||||||
|
System.out.println(new ObjectMapper().writeValueAsString(fos));
|
||||||
|
count += 1;
|
||||||
|
}
|
||||||
|
|
||||||
|
assertEquals(38, count);
|
||||||
|
|
||||||
|
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
@Test
|
||||||
|
void distributeDoiTest() throws Exception{
|
||||||
|
final String sourcePath = getClass()
|
||||||
|
.getResource("/eu/dnetlib/dhp/bypassactionset/fos/fos.json")
|
||||||
|
.getPath();
|
||||||
|
|
||||||
|
DistributeFOSSparkJob
|
||||||
|
.main(
|
||||||
|
new String[] {
|
||||||
|
"--isSparkSessionManaged", Boolean.FALSE.toString(),
|
||||||
|
"--sourcePath", sourcePath,
|
||||||
|
|
||||||
|
"-outputPath", workingDir.toString() + "/distribute"
|
||||||
|
|
||||||
|
});
|
||||||
|
|
||||||
|
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
|
||||||
|
|
||||||
|
JavaRDD<FOSDataModel> tmp = sc
|
||||||
|
.textFile(workingDir.toString() + "/distribute")
|
||||||
|
.map(item -> OBJECT_MAPPER.readValue(item, FOSDataModel.class));
|
||||||
|
|
||||||
|
|
||||||
|
assertEquals(50, tmp.count());
|
||||||
|
assertEquals(1, tmp.filter(row -> row.getDoi().equals("10.3390/s18072310")).count());
|
||||||
|
assertEquals("engineering and technology", tmp.filter(r -> r.getDoi().equals("10.3390/s18072310")).collect().get(0).getLevel1());
|
||||||
|
assertEquals("nano-technology", tmp.filter(r -> r.getDoi().equals("10.3390/s18072310")).collect().get(0).getLevel2());
|
||||||
|
assertEquals("nanoscience & nanotechnology", tmp.filter(r -> r.getDoi().equals("10.3390/s18072310")).collect().get(0).getLevel3());
|
||||||
|
|
||||||
|
assertEquals(1, tmp.filter(row -> row.getDoi().equals("10.1111/1365-2656.12831")).count());
|
||||||
|
assertEquals("social sciences", tmp.filter(r -> r.getDoi().equals("10.1111/1365-2656.12831")).collect().get(0).getLevel1());
|
||||||
|
assertEquals("psychology and cognitive sciences", tmp.filter(r -> r.getDoi().equals("10.1111/1365-2656.12831")).collect().get(0).getLevel2());
|
||||||
|
assertEquals("NULL", tmp.filter(r -> r.getDoi().equals("10.1111/1365-2656.12831")).collect().get(0).getLevel3());
|
||||||
|
|
||||||
|
// {"doi":"10.1111/1365-2656.12831\u000210.17863/cam.24369","level1":"social sciences","level2":"psychology and cognitive sciences","level3":"NULL"}
|
||||||
|
|
||||||
|
}
|
||||||
|
|
||||||
|
/**
|
||||||
|
* @Test
|
||||||
|
* void testCountryPropagationSoftware() throws Exception {
|
||||||
|
* final String sourcePath = getClass()
|
||||||
|
* .getResource("/eu/dnetlib/dhp/countrypropagation/sample/software")
|
||||||
|
* .getPath();
|
||||||
|
* final String preparedInfoPath = getClass()
|
||||||
|
* .getResource("/eu/dnetlib/dhp/countrypropagation/preparedInfo")
|
||||||
|
* .getPath();
|
||||||
|
* SparkCountryPropagationJob
|
||||||
|
* .main(
|
||||||
|
* new String[] {
|
||||||
|
* "--isSparkSessionManaged", Boolean.FALSE.toString(),
|
||||||
|
* "--sourcePath", sourcePath,
|
||||||
|
* "-saveGraph", "true",
|
||||||
|
* "-resultTableName", Software.class.getCanonicalName(),
|
||||||
|
* "-outputPath", workingDir.toString() + "/software",
|
||||||
|
* "-preparedInfoPath", preparedInfoPath
|
||||||
|
* });
|
||||||
|
*
|
||||||
|
* final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
|
||||||
|
*
|
||||||
|
* JavaRDD<Software> tmp = sc
|
||||||
|
* .textFile(workingDir.toString() + "/software")
|
||||||
|
* .map(item -> OBJECT_MAPPER.readValue(item, Software.class));
|
||||||
|
*
|
||||||
|
* // tmp.map(s -> new Gson().toJson(s)).foreach(s -> System.out.println(s));
|
||||||
|
*
|
||||||
|
* Assertions.assertEquals(10, tmp.count());
|
||||||
|
*
|
||||||
|
* Dataset<Software> verificationDs = spark.createDataset(tmp.rdd(), Encoders.bean(Software.class));
|
||||||
|
*
|
||||||
|
* Assertions.assertEquals(6, verificationDs.filter("size(country) > 0").count());
|
||||||
|
* Assertions.assertEquals(3, verificationDs.filter("size(country) = 1").count());
|
||||||
|
* Assertions.assertEquals(3, verificationDs.filter("size(country) = 2").count());
|
||||||
|
* Assertions.assertEquals(0, verificationDs.filter("size(country) > 2").count());
|
||||||
|
*
|
||||||
|
* Dataset<String> countryExploded = verificationDs
|
||||||
|
* .flatMap(
|
||||||
|
* (FlatMapFunction<Software, Country>) row -> row.getCountry().iterator(), Encoders.bean(Country.class))
|
||||||
|
* .map((MapFunction<Country, String>) Qualifier::getClassid, Encoders.STRING());
|
||||||
|
*
|
||||||
|
* Assertions.assertEquals(9, countryExploded.count());
|
||||||
|
*
|
||||||
|
* Assertions.assertEquals(1, countryExploded.filter("value = 'FR'").count());
|
||||||
|
* Assertions.assertEquals(1, countryExploded.filter("value = 'TR'").count());
|
||||||
|
* Assertions.assertEquals(2, countryExploded.filter("value = 'IT'").count());
|
||||||
|
* Assertions.assertEquals(1, countryExploded.filter("value = 'US'").count());
|
||||||
|
* Assertions.assertEquals(1, countryExploded.filter("value = 'MX'").count());
|
||||||
|
* Assertions.assertEquals(1, countryExploded.filter("value = 'CH'").count());
|
||||||
|
* Assertions.assertEquals(2, countryExploded.filter("value = 'JP'").count());
|
||||||
|
*
|
||||||
|
* Dataset<Tuple2<String, String>> countryExplodedWithCountryclassid = verificationDs
|
||||||
|
* .flatMap((FlatMapFunction<Software, Tuple2<String, String>>) row -> {
|
||||||
|
* List<Tuple2<String, String>> prova = new ArrayList<>();
|
||||||
|
* List<Country> countryList = row.getCountry();
|
||||||
|
* countryList
|
||||||
|
* .forEach(
|
||||||
|
* c -> prova
|
||||||
|
* .add(
|
||||||
|
* new Tuple2<>(
|
||||||
|
* row.getId(), c.getClassid())));
|
||||||
|
* return prova.iterator();
|
||||||
|
* }, Encoders.tuple(Encoders.STRING(), Encoders.STRING()));
|
||||||
|
*
|
||||||
|
* Assertions.assertEquals(9, countryExplodedWithCountryclassid.count());
|
||||||
|
*
|
||||||
|
* countryExplodedWithCountryclassid.show(false);
|
||||||
|
* Assertions
|
||||||
|
* .assertEquals(
|
||||||
|
* 1,
|
||||||
|
* countryExplodedWithCountryclassid
|
||||||
|
* .filter(
|
||||||
|
* "_1 = '50|od______1582::6e7a9b21a2feef45673890432af34244' and _2 = 'FR' ")
|
||||||
|
* .count());
|
||||||
|
* Assertions
|
||||||
|
* .assertEquals(
|
||||||
|
* 1,
|
||||||
|
* countryExplodedWithCountryclassid
|
||||||
|
* .filter(
|
||||||
|
* "_1 = '50|dedup_wf_001::40ea2f24181f6ae77b866ebcbffba523' and _2 = 'TR' ")
|
||||||
|
* .count());
|
||||||
|
* Assertions
|
||||||
|
* .assertEquals(
|
||||||
|
* 2,
|
||||||
|
* countryExplodedWithCountryclassid
|
||||||
|
* .filter(
|
||||||
|
* "_1 = '50|od______1106::2b7ca9726230be8e862be224fd463ac4' and (_2 = 'IT' or _2 = 'MX') ")
|
||||||
|
* .count());
|
||||||
|
* Assertions
|
||||||
|
* .assertEquals(
|
||||||
|
* 2,
|
||||||
|
* countryExplodedWithCountryclassid
|
||||||
|
* .filter(
|
||||||
|
* "_1 = '50|od_______935::46a0ad9964171c3dd13373f5427b9a1c' and (_2 = 'IT' or _2 = 'US') ")
|
||||||
|
* .count());
|
||||||
|
* Assertions
|
||||||
|
* .assertEquals(
|
||||||
|
* 1,
|
||||||
|
* countryExplodedWithCountryclassid
|
||||||
|
* .filter(
|
||||||
|
* "_1 = '50|dedup_wf_001::b67bc915603fc01e445f2b5888ba7218' and _2 = 'JP'")
|
||||||
|
* .count());
|
||||||
|
* Assertions
|
||||||
|
* .assertEquals(
|
||||||
|
* 2,
|
||||||
|
* countryExplodedWithCountryclassid
|
||||||
|
* .filter(
|
||||||
|
* "_1 = '50|od_______109::f375befa62a741e9250e55bcfa88f9a6' and (_2 = 'CH' or _2 = 'JP') ")
|
||||||
|
* .count());
|
||||||
|
*
|
||||||
|
* Dataset<Tuple2<String, String>> countryExplodedWithCountryclassname = verificationDs
|
||||||
|
* .flatMap(
|
||||||
|
* (FlatMapFunction<Software, Tuple2<String, String>>) row -> {
|
||||||
|
* List<Tuple2<String, String>> prova = new ArrayList<>();
|
||||||
|
* List<Country> countryList = row.getCountry();
|
||||||
|
* countryList
|
||||||
|
* .forEach(
|
||||||
|
* c -> prova
|
||||||
|
* .add(
|
||||||
|
* new Tuple2<>(
|
||||||
|
* row.getId(),
|
||||||
|
* c.getClassname())));
|
||||||
|
* return prova.iterator();
|
||||||
|
* },
|
||||||
|
* Encoders.tuple(Encoders.STRING(), Encoders.STRING()));
|
||||||
|
*
|
||||||
|
* countryExplodedWithCountryclassname.show(false);
|
||||||
|
* Assertions
|
||||||
|
* .assertEquals(
|
||||||
|
* 1,
|
||||||
|
* countryExplodedWithCountryclassname
|
||||||
|
* .filter(
|
||||||
|
* "_1 = '50|od______1582::6e7a9b21a2feef45673890432af34244' and _2 = 'France' ")
|
||||||
|
* .count());
|
||||||
|
* Assertions
|
||||||
|
* .assertEquals(
|
||||||
|
* 1,
|
||||||
|
* countryExplodedWithCountryclassname
|
||||||
|
* .filter(
|
||||||
|
* "_1 = '50|dedup_wf_001::40ea2f24181f6ae77b866ebcbffba523' and _2 = 'Turkey' ")
|
||||||
|
* .count());
|
||||||
|
* Assertions
|
||||||
|
* .assertEquals(
|
||||||
|
* 2,
|
||||||
|
* countryExplodedWithCountryclassname
|
||||||
|
* .filter(
|
||||||
|
* "_1 = '50|od______1106::2b7ca9726230be8e862be224fd463ac4' and (_2 = 'Italy' or _2 = 'Mexico') ")
|
||||||
|
* .count());
|
||||||
|
* Assertions
|
||||||
|
* .assertEquals(
|
||||||
|
* 2,
|
||||||
|
* countryExplodedWithCountryclassname
|
||||||
|
* .filter(
|
||||||
|
* "_1 = '50|od_______935::46a0ad9964171c3dd13373f5427b9a1c' and (_2 = 'Italy' or _2 = 'United States') ")
|
||||||
|
* .count());
|
||||||
|
* Assertions
|
||||||
|
* .assertEquals(
|
||||||
|
* 1,
|
||||||
|
* countryExplodedWithCountryclassname
|
||||||
|
* .filter(
|
||||||
|
* "_1 = '50|dedup_wf_001::b67bc915603fc01e445f2b5888ba7218' and _2 = 'Japan' ")
|
||||||
|
* .count());
|
||||||
|
* Assertions
|
||||||
|
* .assertEquals(
|
||||||
|
* 2,
|
||||||
|
* countryExplodedWithCountryclassname
|
||||||
|
* .filter(
|
||||||
|
* "_1 = '50|od_______109::f375befa62a741e9250e55bcfa88f9a6' and (_2 = 'Switzerland' or _2 = 'Japan') ")
|
||||||
|
* .count());
|
||||||
|
*
|
||||||
|
* Dataset<Tuple2<String, String>> countryExplodedWithCountryProvenance = verificationDs
|
||||||
|
* .flatMap(
|
||||||
|
* (FlatMapFunction<Software, Tuple2<String, String>>) row -> {
|
||||||
|
* List<Tuple2<String, String>> prova = new ArrayList<>();
|
||||||
|
* List<Country> countryList = row.getCountry();
|
||||||
|
* countryList
|
||||||
|
* .forEach(
|
||||||
|
* c -> prova
|
||||||
|
* .add(
|
||||||
|
* new Tuple2<>(
|
||||||
|
* row.getId(),
|
||||||
|
* c
|
||||||
|
* .getDataInfo()
|
||||||
|
* .getInferenceprovenance())));
|
||||||
|
* return prova.iterator();
|
||||||
|
* },
|
||||||
|
* Encoders.tuple(Encoders.STRING(), Encoders.STRING()));
|
||||||
|
*
|
||||||
|
* Assertions
|
||||||
|
* .assertEquals(
|
||||||
|
* 7, countryExplodedWithCountryProvenance.filter("_2 = 'propagation'").count());
|
||||||
|
* }
|
||||||
|
*/
|
||||||
|
}
|
||||||
|
|
@ -0,0 +1,38 @@
|
||||||
|
{"doi":"10.3390/s18072310","level1":"engineering and technology","level2":"nano-technology","level3":"nanoscience & nanotechnology"}
|
||||||
|
{"doi":"10.1111/1365-2656.12831\u000210.17863/cam.24369","level1":"social sciences","level2":"psychology and cognitive sciences","level3":"NULL"}
|
||||||
|
{"doi":"10.3929/ethz-b-000187584\u000210.1002/chem.201701644","level1":"natural sciences","level2":"NULL","level3":"NULL"}
|
||||||
|
{"doi":"10.1080/01913123.2017.1367361","level1":"medical and health sciences","level2":"clinical medicine","level3":"oncology & carcinogenesis"}
|
||||||
|
{"doi":"10.1051/e3sconf/20199207011","level1":"natural sciences","level2":"earth and related environmental sciences","level3":"environmental sciences"}
|
||||||
|
{"doi":"10.1038/onc.2015.333","level1":"medical and health sciences","level2":"clinical medicine","level3":"oncology & carcinogenesis"}
|
||||||
|
{"doi":"10.1093/mnras/staa256","level1":"natural sciences","level2":"physical sciences","level3":"NULL"}
|
||||||
|
{"doi":"10.1016/j.jclepro.2018.07.166","level1":"engineering and technology","level2":"other engineering and technologies","level3":"building & construction"}
|
||||||
|
{"doi":"10.1103/physrevlett.125.037403","level1":"natural sciences","level2":"physical sciences","level3":"nuclear & particles physics"}
|
||||||
|
{"doi":"10.1080/03602532.2017.1316285","level1":"natural sciences","level2":"NULL","level3":"NULL"}
|
||||||
|
{"doi":"10.1001/jamanetworkopen.2019.1868","level1":"medical and health sciences","level2":"other medical science","level3":"health policy & services"}
|
||||||
|
{"doi":"10.1128/mra.00874-18","level1":"natural sciences","level2":"biological sciences","level3":"plant biology & botany"}
|
||||||
|
{"doi":"10.1016/j.nancom.2018.03.001","level1":"engineering and technology","level2":"NULL","level3":"NULL"}
|
||||||
|
{"doi":"10.1112/topo.12174","level1":"natural sciences","level2":"NULL","level3":"NULL"}
|
||||||
|
{"doi":"10.12688/wellcomeopenres.15846.1","level1":"medical and health sciences","level2":"health sciences","level3":"NULL"}
|
||||||
|
{"doi":"10.21468/scipostphys.3.1.001","level1":"natural sciences","level2":"physical sciences","level3":"NULL"}
|
||||||
|
{"doi":"10.1088/1741-4326/ab6c77","level1":"natural sciences","level2":"physical sciences","level3":"nuclear & particles physics"}
|
||||||
|
{"doi":"10.1109/tpwrs.2019.2944747","level1":"engineering and technology","level2":"electrical engineering, electronic engineering, information engineering","level3":"electrical & electronic engineering"}
|
||||||
|
{"doi":"10.1016/j.expthermflusci.2019.109994\u000210.17863/cam.46212","level1":"engineering and technology","level2":"mechanical engineering","level3":"mechanical engineering & transports"}
|
||||||
|
{"doi":"10.1109/tc.2018.2860012","level1":"engineering and technology","level2":"electrical engineering, electronic engineering, information engineering","level3":"computer hardware & architecture"}
|
||||||
|
{"doi":"10.1002/mma.6622","level1":"natural sciences","level2":"mathematics","level3":"numerical & computational mathematics"}
|
||||||
|
{"doi":"10.1051/radiopro/2020020","level1":"natural sciences","level2":"chemical sciences","level3":"NULL"}
|
||||||
|
{"doi":"10.1007/s12268-019-1003-4","level1":"medical and health sciences","level2":"basic medicine","level3":"NULL"}
|
||||||
|
{"doi":"10.3390/cancers12010236","level1":"medical and health sciences","level2":"health sciences","level3":"biochemistry & molecular biology"}
|
||||||
|
{"doi":"10.6084/m9.figshare.9912614\u000210.6084/m9.figshare.9912614.v1\u000210.1080/00268976.2019.1665199","level1":"natural sciences","level2":"chemical sciences","level3":"physical chemistry"}
|
||||||
|
{"doi":"10.1175/jpo-d-17-0239.1","level1":"natural sciences","level2":"biological sciences","level3":"marine biology & hydrobiology"}
|
||||||
|
{"doi":"10.1007/s13218-020-00674-7","level1":"engineering and technology","level2":"industrial biotechnology","level3":"industrial engineering & automation"}
|
||||||
|
{"doi":"10.1016/j.psyneuen.2016.02.003\u000210.1016/j.psyneuen.2016.02.00310.7892/boris.78886\u000210.7892/boris.78886","level1":"medical and health sciences","level2":"basic medicine","level3":"NULL"}
|
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dedup_wf_001::2a300a7d3ca7347791ebcef986bc0682 10.1109/tc.2018.2860012 engineering and technology electrical engineering, electronic engineering, information engineering computer hardware & architecture
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dedup_wf_001::80bc15d69bdc589149631f3439dde5aa 10.1109/ted.2018.2813542 engineering and technology electrical engineering, electronic engineering, information engineering electrical & electronic engineering
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dedup_wf_001::e3f892db413a689e572dd256acad55fe 10.1038/ng.366710.1038/ng.3667.10.17615/tct6-4m2610.17863/cam.15649 medical and health sciences health sciences genetics & heredity
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dedup_wf_001::14ba594e8fd081847bc3f50f56335003 10.1016/j.jclepro.2019.119065 engineering and technology other engineering and technologies building & construction
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dedup_wf_001::08ac7b33a41bcea2d055ecd8585d632e 10.1111/pce.13392 agricultural and veterinary sciences agriculture, forestry, and fisheries agronomy & agriculture
|
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|
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Reference in New Issue