 Miriam Baglioni
|
bbc9b4f329
|
removed unused imports
|
2020-05-11 14:28:55 +02:00 |
|
Miriam Baglioni
|
757bae53ea
|
removed unusefule serialization points
|
2020-05-11 14:28:37 +02:00 |
|
Miriam Baglioni
|
b35d57a1ac
|
added resources for test
|
2020-05-11 14:15:30 +02:00 |
|
Miriam Baglioni
|
e563e65335
|
moved check from join to method
|
2020-05-11 14:11:44 +02:00 |
|
Miriam Baglioni
|
f5d785e096
|
used the DbClient moved in dhp-common
|
2020-05-11 13:59:42 +02:00 |
|
Miriam Baglioni
|
112b2cb3c3
|
added the test class
|
2020-05-11 13:58:58 +02:00 |
|
Miriam Baglioni
|
9a7ae523c9
|
update to version 1.2.1-SNAPSHOT
|
2020-05-11 13:57:47 +02:00 |
|
Miriam Baglioni
|
2abb84877d
|
Merge branch 'master' into blacklist
|
2020-05-11 10:37:49 +02:00 |
|
Miriam Baglioni
|
b0f0b24263
|
update to version 1.2.1-SNAPSHOT
|
2020-05-11 10:37:31 +02:00 |
|
Miriam Baglioni
|
a7e91e23ba
|
update to versione 1.2.1-SNAPSHOT
|
2020-05-11 10:34:30 +02:00 |
|
Miriam Baglioni
|
bb59bdd60f
|
merge upstream
|
2020-05-11 10:33:17 +02:00 |
|
Miriam Baglioni
|
5e3548add6
|
-
|
2020-05-11 10:33:08 +02:00 |
|
Miriam Baglioni
|
dc8c8fa480
|
changed the version
|
2020-05-11 10:20:48 +02:00 |
|
Miriam Baglioni
|
871e079b45
|
merged with master
|
2020-05-11 10:20:00 +02:00 |
|
Miriam Baglioni
|
622ba87ec2
|
changed the version
|
2020-05-11 10:10:36 +02:00 |
|
Miriam Baglioni
|
391b2399cc
|
merge upstream
|
2020-05-11 10:08:51 +02:00 |
|
Miriam Baglioni
|
32301451ec
|
merge upstream
|
2020-05-11 09:42:23 +02:00 |
|
Miriam Baglioni
|
7e66bc2527
|
fix a typo in the compression keyword and added some logging info in the spark job
|
2020-05-11 09:40:58 +02:00 |
|
Miriam Baglioni
|
9a29ab7508
|
got back to the readPath we have before
|
2020-05-08 13:08:56 +02:00 |
|
Miriam Baglioni
|
28556507e7
|
-
|
2020-05-08 12:54:52 +02:00 |
 Claudio Atzori
|
b2192fdcdc
|
simplified reset_outputpath nodes across the workflows, applied common xml formatting
|
2020-05-08 12:33:31 +02:00 |
|
Miriam Baglioni
|
4c94231cad
|
merge with master fork
|
2020-05-08 12:25:57 +02:00 |
|
Miriam Baglioni
|
9b4c0d4b3a
|
-
|
2020-05-08 11:51:45 +02:00 |
|
Miriam Baglioni
|
53952707b6
|
modified test because of new step of data preparation. It now expects to find ResultCountrySet serialization nstead of DatasourceCountry
|
2020-05-08 11:49:19 +02:00 |
|
Miriam Baglioni
|
d6b9de9f46
|
Merge branch 'master' of https://code-repo.d4science.org/miriam.baglioni/dnet-hadoop
|
2020-05-07 18:22:59 +02:00 |
|
Miriam Baglioni
|
f95d288681
|
fixed swithch of parameters
|
2020-05-07 18:22:32 +02:00 |
|
Claudio Atzori
|
166aafd936
|
heavy cleanup
|
2020-05-07 18:22:26 +02:00 |
|
Miriam Baglioni
|
fb405275f7
|
merged with master
|
2020-05-07 11:48:21 +02:00 |
|
Miriam Baglioni
|
e124278934
|
-
|
2020-05-07 11:47:11 +02:00 |
|
Claudio Atzori
|
5111671e62
|
celanup
|
2020-05-07 11:47:00 +02:00 |
|
Miriam Baglioni
|
9f8855991c
|
changed Encorders.bean to Encoders.kryo
|
2020-05-07 11:44:35 +02:00 |
|
Miriam Baglioni
|
207b899d6d
|
merged with upstream
|
2020-05-07 11:43:53 +02:00 |
|
Claudio Atzori
|
e07feb4c5f
|
removed spurious file
|
2020-05-07 11:42:46 +02:00 |
|
Claudio Atzori
|
5b3f8a0e90
|
using Encoders.bean instead of kryo
|
2020-05-07 11:41:41 +02:00 |
|
Miriam Baglioni
|
182225becb
|
Merge branch 'master' of https://code-repo.d4science.org/miriam.baglioni/dnet-hadoop
|
2020-05-07 11:38:17 +02:00 |
|
Miriam Baglioni
|
5efae3acb9
|
new workflow for job3
|
2020-05-07 11:38:10 +02:00 |
|
Claudio Atzori
|
73243793b2
|
Dataset based implementation for SparkCountryPropagationJob3
|
2020-05-07 11:15:24 +02:00 |
|
Claudio Atzori
|
128c3bf1c8
|
restored Author bean with simple getter/setter, author pid addition moved into dedicated implementation SparkOrcidToResultFromSemRelJob3
|
2020-05-07 11:14:56 +02:00 |
|
Miriam Baglioni
|
b2fec32c87
|
new workflow for job3
|
2020-05-07 10:01:57 +02:00 |
|
Miriam Baglioni
|
29bc8c44b1
|
changes in the construction of new country set
|
2020-05-07 10:01:34 +02:00 |
|
Miriam Baglioni
|
55e825acd4
|
chenged the test according to changes in SparkCOuntryPropagationJob2
|
2020-05-07 10:01:00 +02:00 |
|
Miriam Baglioni
|
16193cf0ba
|
new workflow and parameter for country propagation
|
2020-05-07 09:59:58 +02:00 |
|
Miriam Baglioni
|
5a476c7a13
|
chenged the xquery for the cfhb table
|
2020-05-07 09:58:17 +02:00 |
|
Miriam Baglioni
|
42ad51577a
|
new implementation with one more serialization step
|
2020-05-07 09:57:49 +02:00 |
|
Miriam Baglioni
|
dd2e698a72
|
added a sequentialization step on the spark job. Addedd new parameter
|
2020-05-05 17:03:43 +02:00 |
|
Miriam Baglioni
|
252b219dd5
|
chanced the name of some properties
|
2020-05-05 10:03:32 +02:00 |
|
Miriam Baglioni
|
78578c3ccf
|
fixed wrong trnasition name in workflow
|
2020-05-04 15:46:24 +02:00 |
|
Miriam Baglioni
|
cc7d9b6b19
|
merge upstream
|
2020-05-04 13:59:09 +02:00 |
|
Miriam Baglioni
|
3957c815b9
|
changed the name of some parameters
|
2020-05-04 13:58:52 +02:00 |
|
Miriam Baglioni
|
e218360f8a
|
changed code for the mode of DbClient and also removed the dependency to graph-mapper
|
2020-05-04 12:26:17 +02:00 |
|
Miriam Baglioni
|
31ea05297d
|
moved the DbClient to common and added needed dependency to pom
|
2020-05-04 12:22:28 +02:00 |
|
Miriam Baglioni
|
b7dd400e51
|
added check if author.pid exists or is null
|
2020-05-01 15:09:02 +02:00 |
|
Miriam Baglioni
|
dbf3ba051a
|
minor
|
2020-04-30 20:22:07 +02:00 |
|
Miriam Baglioni
|
43053a286d
|
workflow pom with added blacklist module
|
2020-04-30 18:30:21 +02:00 |
|
Miriam Baglioni
|
0631fe548a
|
pom.xml
|
2020-04-30 18:29:46 +02:00 |
|
Miriam Baglioni
|
38ecfd5785
|
the wf with all the three steps for blacklisting relations
|
2020-04-30 18:28:46 +02:00 |
|
Miriam Baglioni
|
95433e1087
|
parameters for the preparation phase and blacklist phase
|
2020-04-30 18:28:13 +02:00 |
|
Miriam Baglioni
|
1070790c19
|
minor
|
2020-04-30 18:26:58 +02:00 |
|
Miriam Baglioni
|
b9d56b3ced
|
applies the actual removal of the relations
|
2020-04-30 18:26:25 +02:00 |
|
Miriam Baglioni
|
d6d6ebeae5
|
preparation step: creates the subset of the merges relations
|
2020-04-30 18:25:33 +02:00 |
|
Miriam Baglioni
|
13f30664ea
|
minor
|
2020-04-30 15:23:49 +02:00 |
|
Miriam Baglioni
|
276b95b7b3
|
add create file instruction
|
2020-04-30 15:05:17 +02:00 |
|
Miriam Baglioni
|
65a5d67b8b
|
minor modifications
|
2020-04-30 14:45:27 +02:00 |
|
Miriam Baglioni
|
418595fec2
|
removed the saveGraph parameter
|
2020-04-30 14:45:00 +02:00 |
|
Miriam Baglioni
|
ce8b1d0bc3
|
new workflow definition to be inserted in the provision pipeline
|
2020-04-30 14:38:54 +02:00 |
|
Miriam Baglioni
|
4b0bd91012
|
-
|
2020-04-30 12:45:28 +02:00 |
|
Miriam Baglioni
|
2349bfd8b8
|
changed the job test to remove the writeUpdate option
|
2020-04-30 11:43:33 +02:00 |
|
Miriam Baglioni
|
951517f9ec
|
new input parameters and workflow definition to be used in the provision pipeline
|
2020-04-30 11:32:50 +02:00 |
|
Miriam Baglioni
|
026f297e49
|
removed the writeUpdate oprion
|
2020-04-30 11:31:59 +02:00 |
|
Miriam Baglioni
|
c89fe762b1
|
modified relation datasource organization
|
2020-04-30 11:17:03 +02:00 |
|
Miriam Baglioni
|
3abb76ff7a
|
merge with upstream
|
2020-04-30 11:15:54 +02:00 |
|
Miriam Baglioni
|
638a3c465b
|
-
|
2020-04-30 11:05:17 +02:00 |
|
Miriam Baglioni
|
354f0162be
|
changes in the blacklist and workflow definition
|
2020-04-30 10:26:50 +02:00 |
|
Miriam Baglioni
|
564e5d6279
|
added new information in support of blacklist reader
|
2020-04-30 10:22:58 +02:00 |
|
Miriam Baglioni
|
3cffee74b9
|
merge with upstream
|
2020-04-29 18:25:29 +02:00 |
|
Miriam Baglioni
|
9ab46535e7
|
pom with the new blacklist module added
|
2020-04-29 18:17:15 +02:00 |
|
Miriam Baglioni
|
6a47e6191d
|
read from blacklist and write the result as relations on hdfs
|
2020-04-29 18:16:01 +02:00 |
|
Miriam Baglioni
|
869f576273
|
added hash map for relationship entityType id prefix, and relation inverse
|
2020-04-29 18:14:52 +02:00 |
|
Miriam Baglioni
|
b85ad7012a
|
reads the blacklist from the blacklist db and writes it as a set of relations on hdfs
|
2020-04-29 17:29:49 +02:00 |
|
Miriam Baglioni
|
f7695e833c
|
resolved conflicts
|
2020-04-29 11:41:31 +02:00 |
|
Miriam Baglioni
|
2980e50edf
|
merge upstream
|
2020-04-27 15:06:48 +02:00 |
|
Miriam Baglioni
|
df34a4ebcc
|
changed the configuration to add ignorecase option to each verb related to covid-19 community
|
2020-04-27 12:32:56 +02:00 |
|
Miriam Baglioni
|
7a59324ccf
|
changed the test to check for the new ignorecase option
|
2020-04-27 12:31:46 +02:00 |
|
Miriam Baglioni
|
986c97348d
|
added the ignorecase option to each selection verb
|
2020-04-27 12:31:05 +02:00 |
|
Miriam Baglioni
|
a303fc9f73
|
resources for testing propagation of result to comminuty from organization and from semrel
|
2020-04-27 11:14:16 +02:00 |
|
Miriam Baglioni
|
c093d764a3
|
-
|
2020-04-27 11:12:38 +02:00 |
|
Miriam Baglioni
|
c925e2be16
|
test for propagation of result to community from organization and result to community from semrel
|
2020-04-27 10:59:53 +02:00 |
|
Miriam Baglioni
|
ec7f166690
|
changed the bl because of changed of the examples for the re implementation of the propagation step
|
2020-04-27 10:58:41 +02:00 |
|
Miriam Baglioni
|
6135096ef1
|
refactoring
|
2020-04-27 10:57:50 +02:00 |
|
Miriam Baglioni
|
d30e710165
|
fixed duplicates action name in the workflow
|
2020-04-27 10:52:30 +02:00 |
|
Miriam Baglioni
|
f9ee343fc0
|
new parametrized workflow with preparation steps and new parameter input files
|
2020-04-27 10:48:31 +02:00 |
|
Miriam Baglioni
|
e2093644dc
|
changed in the workflow the directory where to store the preparedInfo and the graph genearated at this step
|
2020-04-27 10:46:44 +02:00 |
|
Miriam Baglioni
|
8a58bf2744
|
removed the writeUpdate option
|
2020-04-27 10:45:06 +02:00 |
|
Miriam Baglioni
|
5dccbe13db
|
merge with upstream
|
2020-04-27 10:43:59 +02:00 |
|
Miriam Baglioni
|
7b6505ec69
|
new resuorces for testing propagation of project to result after the re-implementation
|
2020-04-27 10:42:16 +02:00 |
|
Miriam Baglioni
|
1b0e0bd1b5
|
refactoring
|
2020-04-27 10:40:26 +02:00 |
|
Miriam Baglioni
|
e5a177f0a7
|
refactoring
|
2020-04-27 10:36:21 +02:00 |
|
Miriam Baglioni
|
e000754c92
|
refactoring
|
2020-04-27 10:34:03 +02:00 |
|
Miriam Baglioni
|
95a54d5460
|
removed the writeUpdate option. The update is available in the preparedInfo path
|
2020-04-27 10:30:32 +02:00 |
|
Miriam Baglioni
|
8802e4126b
|
re-implemented inverting the couple: from (projectId, relatedResultList) to (resultId, relatedProjectList)
|
2020-04-27 10:26:55 +02:00 |
|
Miriam Baglioni
|
adcbf0e29a
|
refactoring
|
2020-04-24 10:47:43 +02:00 |
|
Miriam Baglioni
|
0e447add66
|
removed unuseful classes
|
2020-04-23 12:59:43 +02:00 |
|
Miriam Baglioni
|
edb00db86a
|
refactoring
|
2020-04-23 12:57:35 +02:00 |
|
Miriam Baglioni
|
44fab140de
|
-
|
2020-04-23 12:42:07 +02:00 |
|
Miriam Baglioni
|
769aa8178a
|
refactoring
|
2020-04-23 12:40:44 +02:00 |
|
Miriam Baglioni
|
d8dc31d4af
|
refactoring
|
2020-04-23 12:35:49 +02:00 |
|
Miriam Baglioni
|
8c5dac5cc3
|
removed unuseful classes
|
2020-04-23 12:30:58 +02:00 |
|
Miriam Baglioni
|
15656684b9
|
added proeprties for the preparation step and actual propagation. Added the new parametrized workflow
|
2020-04-23 12:13:34 +02:00 |
|
Miriam Baglioni
|
6f35f5ca42
|
added the steps of reset output dir and copy information not changed by the propagation step
|
2020-04-23 12:12:07 +02:00 |
|
Miriam Baglioni
|
19cd5b85c0
|
changed the classname to execute
|
2020-04-23 12:07:41 +02:00 |
|
Miriam Baglioni
|
fa2ff5c6f5
|
refactoring
|
2020-04-23 11:58:26 +02:00 |
|
Miriam Baglioni
|
540f70298b
|
added missing property
|
2020-04-23 11:51:48 +02:00 |
|
Miriam Baglioni
|
e431fe4f5b
|
added the implements Serializable to each class
|
2020-04-23 11:48:47 +02:00 |
|
Miriam Baglioni
|
24fa81d7e8
|
implementation parametrized for result type
|
2020-04-23 11:44:19 +02:00 |
|
Miriam Baglioni
|
ac7ec349cf
|
removed the shaded lib module
|
2020-04-23 11:43:03 +02:00 |
|
Miriam Baglioni
|
ab2a24cc2b
|
changed the dependency to use reflections to find annotated classes
|
2020-04-23 11:08:47 +02:00 |
|
Miriam Baglioni
|
04fc223346
|
add method addPid
|
2020-04-23 11:07:44 +02:00 |
|
Miriam Baglioni
|
5153d88bd3
|
defiition of workflow and properties for bulktagging
|
2020-04-23 11:04:53 +02:00 |
|
Miriam Baglioni
|
3b2e4ab670
|
test for bulktag
|
2020-04-23 10:00:10 +02:00 |
|
Miriam Baglioni
|
259525cb93
|
Merge remote-tracking branch 'upstream/master'
|
2020-04-21 18:33:46 +02:00 |
|
Miriam Baglioni
|
30e53261d0
|
minor
|
2020-04-21 18:00:53 +02:00 |
|
Miriam Baglioni
|
676ba49324
|
changed pom of dhp-build
|
2020-04-21 16:09:23 +02:00 |
|
Miriam Baglioni
|
90c768dde6
|
added shaded libs module
|
2020-04-21 16:03:51 +02:00 |
|
Miriam Baglioni
|
e1848b7603
|
minor
|
2020-04-18 14:16:42 +02:00 |
|
Miriam Baglioni
|
0ff9b1ef05
|
added needed parameter
|
2020-04-18 14:16:29 +02:00 |
|
Miriam Baglioni
|
e2dfe8b656
|
removed not used action
|
2020-04-18 14:16:07 +02:00 |
|
Miriam Baglioni
|
437ebbad76
|
refactorign
|
2020-04-18 14:15:09 +02:00 |
|
Miriam Baglioni
|
9a8876ac86
|
added needed parameter
|
2020-04-18 14:14:08 +02:00 |
|
Miriam Baglioni
|
9854852878
|
refactoring
|
2020-04-18 14:13:16 +02:00 |
|
Miriam Baglioni
|
454b8a6a29
|
Merge remote-tracking branch 'upstream/master'
|
2020-04-18 14:09:44 +02:00 |
|
Miriam Baglioni
|
890ec28f0f
|
input parameters for preparation step1
|
2020-04-18 14:09:37 +02:00 |
|
Miriam Baglioni
|
fbf5c27c27
|
Added preparation classes before actual propagation
|
2020-04-18 14:09:03 +02:00 |
|
Miriam Baglioni
|
72c63a326e
|
removed unuseful class
|
2020-04-17 17:14:51 +02:00 |
|
Miriam Baglioni
|
00c2ca3ee5
|
-
|
2020-04-17 17:14:25 +02:00 |
|
Miriam Baglioni
|
7d9fd75020
|
add method addPid
|
2020-04-17 17:13:48 +02:00 |
|
Miriam Baglioni
|
5cd092114f
|
use mergeFrom method to add the new community contexts
|
2020-04-17 17:13:18 +02:00 |
|
Miriam Baglioni
|
264c82f21e
|
minor
|
2020-04-17 16:54:46 +02:00 |
|
Miriam Baglioni
|
8c079c7a49
|
unit test for orcid to result propagation from semrel
|
2020-04-17 16:53:03 +02:00 |
|
Miriam Baglioni
|
eacd140a98
|
added missing parameter(s)
|
2020-04-17 16:52:30 +02:00 |
|
Miriam Baglioni
|
390e250faf
|
use the addPid method of the Author class to add a new pid
|
2020-04-17 16:52:02 +02:00 |
|
Miriam Baglioni
|
b46b080ddc
|
use mergeFrom method call to add the country(ies) instead of modify the result directly.
|
2020-04-17 16:50:54 +02:00 |
|
Miriam Baglioni
|
c4987dd12a
|
minor
|
2020-04-17 16:49:08 +02:00 |
|
Miriam Baglioni
|
adc11c97a7
|
Merge remote-tracking branch 'upstream/master'
|
2020-04-17 12:34:31 +02:00 |
|
Miriam Baglioni
|
5d772e5263
|
new implementation of propagation of community to result from organization that exploits the prepared info
|
2020-04-16 18:45:22 +02:00 |
|
Miriam Baglioni
|
fff1e5ec39
|
classes to (de)serialize the data provided in the preparation step
|
2020-04-16 18:44:43 +02:00 |
|
Miriam Baglioni
|
3fd9d6b02f
|
preparation phase for the propagation of community to result from organization
|
2020-04-16 18:43:55 +02:00 |
|
Miriam Baglioni
|
a9120164aa
|
added hive parameter and a step of reset of the working dir in the workflow
|
2020-04-16 18:42:04 +02:00 |
|
Miriam Baglioni
|
6afbd542ca
|
changed the save mode to avoid NegativeArraySize... error. Needed to modify also the preparationstep2
|
2020-04-16 18:40:14 +02:00 |
|
Miriam Baglioni
|
d60fd36046
|
changed the save method
|
2020-04-16 16:14:15 +02:00 |
|
Miriam Baglioni
|
951b13ac46
|
input parameters and workflow for new implementation of propagation of orcid to result from semrel and preparation phases
|
2020-04-16 16:13:10 +02:00 |
|
Miriam Baglioni
|
4d89f3dfed
|
removed unuseful classes
|
2020-04-16 16:11:44 +02:00 |
|
Miriam Baglioni
|
5e72a51f11
|
-
|
2020-04-16 16:11:20 +02:00 |
|
Miriam Baglioni
|
c33a593381
|
renamed
|
2020-04-16 16:09:47 +02:00 |
|
Miriam Baglioni
|
0e5399bf74
|
seconf phase of data preparation. Groups all the possible updates by id
|
2020-04-16 16:08:51 +02:00 |
|
Miriam Baglioni
|
548ba915ac
|
first phase of data preparation. For each result type (parallel) it produces the possible updates
|
2020-04-16 15:58:42 +02:00 |
|
Miriam Baglioni
|
243013cea3
|
to (de)serialize the association from the resultId and the list of autoritative authors with orcid to possibly propagate
|
2020-04-16 15:57:29 +02:00 |
|
Miriam Baglioni
|
ac3ad25b36
|
to (de)serialize needed information of the author to determine if the orcid can be passed (name, surname, fullname (?), orcid)
|
2020-04-16 15:56:33 +02:00 |
|
Miriam Baglioni
|
d6cd700a32
|
new implementation that exploits prepared information (the list of possible updates: resultId - possible list of orcid to be added
|
2020-04-16 15:55:25 +02:00 |
|
Miriam Baglioni
|
f077f22f73
|
minor
|
2020-04-16 15:54:16 +02:00 |
|
Miriam Baglioni
|
fd5d792e35
|
refactoring
|
2020-04-16 15:53:34 +02:00 |
|
Miriam Baglioni
|
08227cfcbd
|
resources needed for running the test on propagation of result to organization from institutional repositories
|
2020-04-16 11:06:10 +02:00 |
|
Miriam Baglioni
|
a97e915c24
|
test unit for propagation of result to organization from institutional repository
|
2020-04-16 11:05:21 +02:00 |
|
Miriam Baglioni
|
b078710924
|
modification to the test due to the removal of unused parameters
|
2020-04-16 11:04:39 +02:00 |
|
Miriam Baglioni
|
a5e5c81a2c
|
input parameters and workflow definition for propagation of result to organization from institutional repositories
|
2020-04-16 11:03:41 +02:00 |
|
Miriam Baglioni
|
5e1bd67680
|
removed unuseful parameter
|
2020-04-16 11:02:01 +02:00 |
|
Miriam Baglioni
|
eaf19ce01b
|
removed unuseful class
|
2020-04-16 10:59:33 +02:00 |
|
Miriam Baglioni
|
7bd49abbef
|
commit to delete
|
2020-04-16 10:59:09 +02:00 |
|
Miriam Baglioni
|
53f418098b
|
added the isTest checkpoint
|
2020-04-16 10:53:48 +02:00 |
|
Miriam Baglioni
|
c28333d43f
|
minor
|
2020-04-16 10:52:50 +02:00 |
|
Miriam Baglioni
|
a8100baed6
|
changed the way to save the results to aviod NegativeArray... error
|
2020-04-16 10:50:09 +02:00 |
|
Miriam Baglioni
|
79b978ec57
|
refactoring
|
2020-04-16 10:48:41 +02:00 |
|
Miriam Baglioni
|
3577219127
|
removed unuseful classes
|
2020-04-15 12:45:49 +02:00 |
|
Miriam Baglioni
|
964b22d418
|
modified the writing of the new relations. before: read old rels, add the new ones to them, write all the relations in new location. Now: first step of the wf copies the old relation i new location. If new relations are found, they are saved in the new location in append mode.
|
2020-04-15 12:32:01 +02:00 |
|
Miriam Baglioni
|
43f0590d4b
|
change in the testing because the business logic is changed.
|
2020-04-15 12:29:50 +02:00 |
|
Miriam Baglioni
|
473d17767c
|
new business logic for the actual propagation. It exploits previously computed information
|
2020-04-15 12:25:44 +02:00 |
|
Miriam Baglioni
|
6a377a7582
|
class to compute some information needed for the actual propagation
|
2020-04-15 12:25:11 +02:00 |
|
Miriam Baglioni
|
5a3487280d
|
classes to serialize/deserialize the prepared data
|
2020-04-15 12:24:36 +02:00 |
|
Miriam Baglioni
|
62b09be43c
|
added correct descritption for parameter isSparkSessionManaged
|
2020-04-15 12:23:06 +02:00 |
|
Miriam Baglioni
|
1859ce8902
|
minor refactoring
|
2020-04-15 12:21:31 +02:00 |
|
Miriam Baglioni
|
27f1d3ee8f
|
minor refactoring
|
2020-04-15 12:21:05 +02:00 |
|
Miriam Baglioni
|
3f4b579e7f
|
new workflow. It is composed of four steps. The first removes the directory where to store the results. The second copies the relation to the new locatio, the third id the preparation phase and then the actual propagation
|
2020-04-14 16:49:24 +02:00 |
|
Miriam Baglioni
|
ca2b40952e
|
minor changes
|
2020-04-14 16:48:02 +02:00 |
|
Miriam Baglioni
|
61d39e659e
|
parameters for the project2result propagation phase
|
2020-04-14 16:47:39 +02:00 |
|
Miriam Baglioni
|
92f19fa0a0
|
parameters for the project2result preparation phase
|
2020-04-14 16:46:57 +02:00 |
|
Miriam Baglioni
|
cadab9b81d
|
new implementation for result to project propagation. Use the prepared info in propagation
|
2020-04-14 16:46:07 +02:00 |
|
Miriam Baglioni
|
ceb1f299bf
|
minor changes
|
2020-04-14 16:45:12 +02:00 |
|
Miriam Baglioni
|
e0038bde5b
|
Support class to serialize/deserialize the association project, set of linked results
|
2020-04-14 15:32:12 +02:00 |
|
Miriam Baglioni
|
c0bebb7c35
|
code to compute the prepared information used in the actual propagation step. This step will produce who files: one with potential updates (association between projects and a list of results), the other already linked entities (association between projects and the list of results already linked to them)
|
2020-04-14 15:31:26 +02:00 |
|
Miriam Baglioni
|
f47ee5b78e
|
directory where to store the prepared infor before actual propagation will take place
|
2020-04-14 15:29:21 +02:00 |
|
Miriam Baglioni
|
36cc9516d8
|
the starting relation set for testing
|
2020-04-14 15:28:34 +02:00 |
|
Miriam Baglioni
|
4b01dc60e6
|
test unit for result to project propagation
|
2020-04-14 15:28:00 +02:00 |
|
Miriam Baglioni
|
8f12292daa
|
changed the way to save the results on filesystem
|
2020-04-11 16:47:34 +02:00 |
|
Miriam Baglioni
|
87f802821e
|
new workflow for country propagation: it is composed of the preparation step and in the propagation. The propagation part runs in parallel on the result types
|
2020-04-11 16:40:22 +02:00 |
|
Miriam Baglioni
|
a562080b0b
|
parameters to be used in the prepared Job and in the actual country propagation job
|
2020-04-11 16:39:17 +02:00 |
|
Miriam Baglioni
|
1251ad4455
|
removed unuseful class
|
2020-04-11 16:38:13 +02:00 |
|
Miriam Baglioni
|
aef9b3aa90
|
new parametric implementation of country propagation. Exploits information compute before and broadcasts it to each executor
|
2020-04-11 16:36:59 +02:00 |
|
Miriam Baglioni
|
a2d833d5dd
|
step of data preparation before actual country propagation will take palce
|
2020-04-11 16:36:03 +02:00 |
|
Miriam Baglioni
|
6897c920a2
|
classes in support of new implementation of country propagation
|
2020-04-11 16:35:26 +02:00 |
|
Miriam Baglioni
|
85766a02d8
|
added dependency to use hive on local machine
|
2020-04-11 16:34:22 +02:00 |
|
Miriam Baglioni
|
79b8ea4fed
|
prepared information to be used in actual country propagation. Subset of info
|
2020-04-11 16:29:41 +02:00 |
|
Miriam Baglioni
|
1822476613
|
Test for country propagation
|
2020-04-11 16:28:09 +02:00 |
|
Miriam Baglioni
|
7783b09c5b
|
new implementation for result to project propagation. Prepare some info to be used in propagation
|
2020-04-11 16:26:23 +02:00 |
|
Miriam Baglioni
|
90469789b9
|
two new classes fro new implementation of project to result propagation
|
2020-04-09 13:29:01 +02:00 |
|
Miriam Baglioni
|
627ad58a8b
|
new wf definition
|
2020-04-09 11:33:19 +02:00 |
|
Miriam Baglioni
|
9c63c4840d
|
new workflow and parameters for country propagation
|
2020-04-08 19:13:42 +02:00 |
|
Miriam Baglioni
|
a2d309545b
|
new parametrized implementation for country propagation
|
2020-04-08 19:12:59 +02:00 |
|
Miriam Baglioni
|
6dfdba9ef7
|
new parametrized implementation for country propagation
|
2020-04-08 18:14:37 +02:00 |
|
Miriam Baglioni
|
03f7cb6402
|
new parametrized implementation for country propagation
|
2020-04-08 18:08:41 +02:00 |
|
Miriam Baglioni
|
df2fc4a6d7
|
Merge remote-tracking branch 'upstream/master'
|
2020-04-08 18:07:26 +02:00 |
|
Miriam Baglioni
|
fcfef4632f
|
input parameters for country propagation preparation job
|
2020-04-08 18:07:18 +02:00 |
|
Miriam Baglioni
|
61045e84d9
|
merged conflict in pom
|
2020-04-08 14:23:30 +02:00 |
|
Miriam Baglioni
|
540da4ab61
|
new busuness logic with prepared info before actual job run
|
2020-04-08 13:04:04 +02:00 |
|
Miriam Baglioni
|
8438702b3d
|
addition in propagation constants
|
2020-04-08 10:54:01 +02:00 |
|
Miriam Baglioni
|
2afe971816
|
new implementation for country propagatio
|
2020-04-08 10:49:09 +02:00 |
|
Miriam Baglioni
|
beebbcf66b
|
new config for countrypropagation
|
2020-04-08 10:31:29 +02:00 |
|
Miriam Baglioni
|
dd011f4a95
|
to make them visible to Claudio
|
2020-03-30 10:55:47 +02:00 |
|
Miriam Baglioni
|
b1af90a45f
|
to make it visible to Claudio
|
2020-03-30 10:50:03 +02:00 |
|
Miriam Baglioni
|
19d7f8b51d
|
decommented execution for some of the result type for testing purposes
|
2020-03-24 16:49:46 +01:00 |
|
Miriam Baglioni
|
ad24c8478f
|
added missing parameter
|
2020-03-24 16:19:59 +01:00 |
|
Miriam Baglioni
|
46094a3eec
|
bug fixing for implementation with dataset
|
2020-03-24 16:19:36 +01:00 |
|
Miriam Baglioni
|
ad712f2d79
|
added the needed variables in the config and read the variables in the workflow
|
2020-03-23 17:11:36 +01:00 |
|
Miriam Baglioni
|
f1e9fe9752
|
changed implementation using dataset and query on hive
|
2020-03-23 17:11:00 +01:00 |
|
Miriam Baglioni
|
f09cd1e911
|
removed unuseful variable in the configuration
|
2020-03-23 17:10:14 +01:00 |
|
Miriam Baglioni
|
9418e3d4fa
|
read dataset from files instead of using hive tables
|
2020-03-23 17:09:27 +01:00 |
|
Miriam Baglioni
|
a7bf037306
|
remove unused class
|
2020-03-23 14:36:43 +01:00 |
|
Miriam Baglioni
|
8ab8b6b0bf
|
minor
|
2020-03-23 14:35:23 +01:00 |
|
Miriam Baglioni
|
30d58fd98c
|
change the configuration of the workflow
|
2020-03-23 14:32:49 +01:00 |
|
Miriam Baglioni
|
a440152b46
|
refactoring
|
2020-03-23 14:30:56 +01:00 |
|
Miriam Baglioni
|
47561f3597
|
changed the implementation from rdd to dataset got from sql queries (on hive)
|
2020-03-23 11:58:32 +01:00 |
|
Miriam Baglioni
|
67ea3cf3ed
|
changed the way to read the file with info on resource or relation. From sequenceFile to textFile
|
2020-03-17 16:32:05 +01:00 |
|
Miriam Baglioni
|
b4652d018c
|
moved the creation of new dir to common class.
|
2020-03-17 16:31:24 +01:00 |
|
Miriam Baglioni
|
92f4e0001d
|
Merge branch 'bulktag'
|
2020-03-16 13:33:27 +01:00 |
|
Miriam Baglioni
|
ab08a37024
|
Merge remote-tracking branch 'upstream/master'
|
2020-03-16 12:45:23 +01:00 |
|
Miriam Baglioni
|
c37f2bd1b5
|
moved some classes to package to make code clearer
|
2020-03-03 16:42:23 +01:00 |
|
Miriam Baglioni
|
d9d2060561
|
implementation for bulk tagging
|
2020-03-03 16:38:50 +01:00 |
|
Miriam Baglioni
|
e80f80ca93
|
properties and workflow for new propagation
|
2020-03-02 17:03:31 +01:00 |
|
Miriam Baglioni
|
50080c1b3c
|
changed the implementation of addAll method. Before adding all the items in a collection, we check if the accumulator set is not empty
|
2020-03-02 16:41:37 +01:00 |
|
Miriam Baglioni
|
02815dd2cf
|
update result for community moved in propagationconstants
|
2020-03-02 16:40:56 +01:00 |
|
Miriam Baglioni
|
95f8c3092f
|
update for new propagation implementation and moving of updateResult for community business logic since the same can be used for result to community from organization and result to community from semrel
|
2020-03-02 16:40:17 +01:00 |
|
Miriam Baglioni
|
3d63f35dcb
|
implementation of new propagation. Result to community for results linked to given organization. We exploit the hasAuthorInstitution semantic link to discover which results are related to institutions
|
2020-03-02 16:39:03 +01:00 |
|
Miriam Baglioni
|
3a4ccb26c0
|
New properties for the orcid to result propagation through semantic relation
|
2020-02-28 18:26:04 +01:00 |
|
Miriam Baglioni
|
b50166b9ad
|
None
|
2020-02-28 18:25:28 +01:00 |
|
Miriam Baglioni
|
550cb21c23
|
None
|
2020-02-28 18:24:39 +01:00 |
|
Miriam Baglioni
|
b098ee0bae
|
Changed the structure of typed row to conatain also list of authors with orcid
|
2020-02-28 18:23:51 +01:00 |
|
Miriam Baglioni
|
841f5523fe
|
Added information and methods for the new propagation of orcid to result through semrel
|
2020-02-28 18:23:16 +01:00 |
|
Miriam Baglioni
|
2b7b05fb29
|
New propagation of ORCID to result exploiting the semantic relation connecting them. R has author with orcid o, R is bounf by strong semantic relationship with R1 that has the same author withouth orcid, then o is also associated to the author in R1
|
2020-02-28 18:22:41 +01:00 |
|
Miriam Baglioni
|
833c83c694
|
Wrong file name
|
2020-02-28 18:21:01 +01:00 |
|
Miriam Baglioni
|
a86426776a
|
Changed from Oaf to Result the type of the updateResult method parameter, not to be forced to cast each time
|
2020-02-28 18:20:19 +01:00 |
|
Miriam Baglioni
|
3f941a2af4
|
Merge branch 'master' into propagationCommunityToResult
|
2020-02-19 18:05:22 +01:00 |
|
Miriam Baglioni
|
b2bdc9b99b
|
merging project to result propagation logic to master
|
2020-02-19 18:04:59 +01:00 |
|
Miriam Baglioni
|
a153a07997
|
none
|
2020-02-19 18:03:13 +01:00 |
|
Miriam Baglioni
|
d0279af630
|
start to implement the business logic
|
2020-02-19 17:59:24 +01:00 |
|
Miriam Baglioni
|
5f63ab1416
|
to query the information system to get the list of comunities up to now. It will have a more general usage when introducing bulk tagging
|
2020-02-19 17:59:02 +01:00 |
|
Miriam Baglioni
|
5ceb174d24
|
Merge branch 'master' into propagationCommunityToResult
|
2020-02-19 17:13:38 +01:00 |
|
Miriam Baglioni
|
e8af7a6b64
|
Merge remote-tracking branch 'upstream/master'
|
2020-02-19 17:03:10 +01:00 |
|
Miriam Baglioni
|
79ff79b0cd
|
propagation of result to community through semantic relation: C -> R and R -> isSupplementedBy R1 => C -> R1
|
2020-02-19 17:02:39 +01:00 |
|
Miriam Baglioni
|
ab84163bb3
|
added set accumulator in TypedRow and used it to acucmulate country information in Country Propagation
|
2020-02-19 15:02:50 +01:00 |
|
Miriam Baglioni
|
bb0fdf5e0a
|
fix wrong source target in new relation
|
2020-02-19 15:00:46 +01:00 |
|
Miriam Baglioni
|
9e1678ccf8
|
fix error in workflow name
|
2020-02-19 14:59:24 +01:00 |
|
Miriam Baglioni
|
8aa3b4d7c0
|
adding to propagation constants the ones needed for propagation of project to result and addition of new accumulator Set in typed row to collect values of a type
|
2020-02-19 14:55:54 +01:00 |
|
Miriam Baglioni
|
7167673a58
|
implementation and configuration for propagation of project to result through semantic relation: P -> R1 and R1 -> supplemented by -> R2 => P -> R2
|
2020-02-19 14:54:18 +01:00 |
|
Miriam Baglioni
|
b81e6af429
|
added config for new propagation
|
2020-02-18 17:30:44 +01:00 |
|
Miriam Baglioni
|
b736a9581c
|
changed relclass and reltype in reelation specification for country propagation and implementation of propagation of result affiliation through institutional repositories
|
2020-02-18 17:27:28 +01:00 |
|
Miriam Baglioni
|
ed262293a6
|
aligned to new snapshot version 1.1.6
|
2020-02-18 17:25:32 +01:00 |
|
Miriam Baglioni
|
2688a89c21
|
changed relclass and reltype in relation specification
|
2020-02-18 17:24:40 +01:00 |
|
Miriam Baglioni
|
c0022fec9f
|
moved on upper package to serve other propagations
|
2020-02-18 17:24:11 +01:00 |
|
Miriam Baglioni
|
e0a777028a
|
fix problem in parameters
|
2020-02-18 17:23:34 +01:00 |
|
Miriam Baglioni
|
5868ff8a86
|
synch fork with master
|
2020-02-17 18:22:27 +01:00 |
|
Miriam Baglioni
|
18e4092d5c
|
change name of properties dir
|
2020-02-17 18:07:06 +01:00 |
|
Miriam Baglioni
|
bd0e504b42
|
changes to the wf configuration
|
2020-02-17 18:04:15 +01:00 |
|
Miriam Baglioni
|
3a9d723655
|
adding default parameters in code
|
2020-02-17 16:30:52 +01:00 |
|
Miriam Baglioni
|
a5517eee35
|
adding the mkdirs for creation of propagation folder under provision on tmp
|
2020-02-17 14:20:42 +01:00 |
|
Miriam Baglioni
|
9abde5cfac
|
removed outputPath from job parameters
|
2020-02-17 14:19:53 +01:00 |
|
Miriam Baglioni
|
be2421d5d8
|
removed wrongly pushed file
|
2020-02-17 12:07:26 +01:00 |
|
Miriam Baglioni
|
c7bc73aedf
|
country propagation for results collected from institutional repositories
|
2020-02-17 11:44:48 +01:00 |