new script to nquads download from scraping service

removed duplicated subjects
fixed alternate identifier
2022-07-19 12:12:01 +02:00 · 2022-06-28 13:07:53 +02:00 · 2022-05-18 12:02:27 +02:00 · 2022-05-18 10:44:31 +02:00 · 2022-05-18 10:07:50 +02:00 · 2022-05-18 09:46:43 +02:00
32 changed files with 3469 additions and 0 deletions
--- a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/bioschema/generate_dataset_params.json
+++ b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/bioschema/generate_dataset_params.json
@ -0,0 +1,50 @@
+[
+  {
+    "paramName": "s",
+    "paramLongName": "sourcePath",
+    "paramDescription": "the source mdstore path",
+    "paramRequired": false
+  },
+  {
+    "paramName": "t",
+    "paramLongName": "targetPath",
+    "paramDescription": "the path where storing final dataset",
+    "paramRequired": false
+  },
+  {
+    "paramName": "mo",
+    "paramLongName": "mdstoreOutputVersion",
+    "paramDescription": "the target mdstore path",
+    "paramRequired": false
+  },
+  {
+    "paramName": "m",
+    "paramLongName": "master",
+    "paramDescription": "the master name",
+    "paramRequired": true
+  },
+  {
+    "paramName": "i",
+    "paramLongName": "isLookupUrl",
+    "paramDescription": "the isLookup URL",
+    "paramRequired": false
+  },
+  {
+    "paramName": "l",
+    "paramLongName": "exportLinks",
+    "paramDescription": "should export also links",
+    "paramRequired": false
+  },
+  {
+    "paramName": "k",
+    "paramLongName": "datasourceKey",
+    "paramDescription": "the key that identifies the datasource",
+    "paramRequired": true
+  },
+  {
+    "paramName": "p",
+    "paramLongName": "profile",
+    "paramDescription": "resource profile",
+    "paramRequired": true
+  }
+]
--- a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/bioschema/oozie_app/config-default.xml
+++ b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/bioschema/oozie_app/config-default.xml
@ -0,0 +1,84 @@
+<configuration>
+
+    <!-- OCEAN  -->
+
+<!--    <property>-->
+<!--        <name>jobTracker</name>-->
+<!--        <value>yarnRM</value>-->
+<!--    </property>-->
+<!--    <property>-->
+<!--        <name>nameNode</name>-->
+<!--        <value>hdfs://nameservice1</value>-->
+<!--    </property>-->
+<!--    <property>-->
+<!--        <name>oozie.use.system.libpath</name>-->
+<!--        <value>true</value>-->
+<!--    </property>-->
+<!--    <property>-->
+<!--        <name>oozie.action.sharelib.for.spark</name>-->
+<!--        <value>spark2</value>-->
+<!--    </property>-->
+<!--    <property>-->
+<!--        <name>oozie.launcher.mapreduce.user.classpath.first</name>-->
+<!--        <value>true</value>-->
+<!--    </property>-->
+<!--    <property>-->
+<!--        <name>spark2YarnHistoryServerAddress</name>-->
+<!--        <value>http://hadoop-rm2.garr-pa1.d4science.org:19888</value>-->
+<!--    </property>-->
+<!--    <property>-->
+<!--        <name>spark2EventLogDir</name>-->
+<!--        <value>/user/spark/spark2ApplicationHistory</value>-->
+<!--    </property>-->
+<!--    <property>-->
+<!--        <name>spark2ExtraListeners</name>-->
+<!--        <value>"com.cloudera.spark.lineage.NavigatorAppListener"</value>-->
+<!--    </property>-->
+<!--    <property>-->
+<!--        <name>spark2SqlQueryExecutionListeners</name>-->
+<!--        <value>"com.cloudera.spark.lineage.NavigatorQueryListener"</value>-->
+<!--    </property>-->
+
+    <!-- GARR  -->
+
+    <property>
+        <name>jobTracker</name>
+        <value>hadoop-rm3.garr-pa1.d4science.org:8032</value>
+    </property>
+    <property>
+        <name>nameNode</name>
+        <value>hdfs://hadoop-rm1.garr-pa1.d4science.org:8020</value>
+    </property>
+    <property>
+        <name>hive_metastore_uris</name>
+        <value>thrift://hadoop-edge3.garr-pa1.d4science.org:9083</value>
+    </property>
+    <property>
+        <name>spark2YarnHistoryServerAddress</name>
+        <value>http://hadoop-rm2.garr-pa1.d4science.org:19888</value>
+    </property>
+    <property>
+        <name>oozie.launcher.mapreduce.user.classpath.first</name>
+        <value>true</value>
+    </property>
+    <property>
+        <name>oozie.use.system.libpath</name>
+        <value>true</value>
+    </property>
+    <property>
+        <name>oozie.action.sharelib.for.spark</name>
+        <value>spark2</value>
+    </property>
+    <property>
+        <name>spark2EventLogDir</name>
+        <value>/user/spark/spark2ApplicationHistory</value>
+    </property>
+    <property>
+        <name>spark2ExtraListeners</name>
+        <value>"com.cloudera.spark.lineage.NavigatorAppListener"</value>
+    </property>
+    <property>
+        <name>spark2SqlQueryExecutionListeners</name>
+        <value>"com.cloudera.spark.lineage.NavigatorQueryListener"</value>
+    </property>
+</configuration>
--- a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/bioschema/oozie_app/workflow.xml
+++ b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/bioschema/oozie_app/workflow.xml
@ -0,0 +1,134 @@
+<workflow-app name="generate_bioschema" xmlns="uri:oozie:workflow:0.5">
+    <parameters>
+        <property>
+            <name>mainPath</name>
+            <value>/data/bioschema/mobidb</value>
+            <description>the working path of Bioschema stores</description>
+        </property>
+        <property>
+            <name>datasourceKey</name>
+            <value>mobidb</value>
+            <description>the key that identifies the datasource (eg ped, disprot, mobidb)</description>
+        </property>
+        <property>
+            <name>profile</name>
+            <value>protein</value>
+            <description>resource profile (eg protein, gene)</description>
+        </property>
+    </parameters>
+
+    <start to="ResetDataset"/>
+
+    <kill name="Kill">
+        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
+    </kill>
+
+    <action name="ResetDataset">
+        <fs>
+            <delete path='${mainPath}/dataset/*'/>
+        </fs>
+        <ok to="TransformJob"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="StartTransaction">
+        <java>
+            <configuration>
+                <property>
+                    <name>oozie.launcher.mapreduce.user.classpath.first</name>
+                    <value>true</value>
+                </property>
+            </configuration>
+            <main-class>eu.dnetlib.dhp.aggregation.mdstore.MDStoreActionNode</main-class>
+            <arg>--action</arg><arg>NEW_VERSION</arg>
+            <arg>--mdStoreID</arg><arg>${mdStoreOutputId}</arg>
+            <arg>--mdStoreManagerURI</arg><arg>${mdStoreManagerURI}</arg>
+            <capture-output/>
+        </java>
+        <ok to="TransformJob"/>
+        <error to="EndReadRollBack"/>
+    </action>
+
+    <action name="TransformJob">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn-cluster</master>
+            <mode>cluster</mode>
+            <name>TransformJob</name>
+            <class>eu.dnetlib.dhp.bioschema.GenerateBioschemaDatasetSpark</class>
+            <jar>dhp-aggregation-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.sql.shuffle.partitions=3840
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${mainPath}/json-datacite</arg>
+            <arg>--targetPath</arg><arg>${mainPath}/dataset</arg>
+            <arg>--exportLinks</arg><arg>true</arg>
+            <arg>--datasourceKey</arg><arg>${datasourceKey}</arg>
+            <arg>--profile</arg><arg>${profile}</arg>
+            <arg>--master</arg><arg>yarn-cluster</arg>
+        </spark>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="CommitVersion">
+        <java>
+            <configuration>
+                <property>
+                    <name>oozie.launcher.mapreduce.user.classpath.first</name>
+                    <value>true</value>
+                </property>
+            </configuration>
+            <main-class>eu.dnetlib.dhp.aggregation.mdstore.MDStoreActionNode</main-class>
+            <arg>--action</arg><arg>COMMIT</arg>
+            <arg>--namenode</arg><arg>${nameNode}</arg>
+            <arg>--mdStoreVersion</arg><arg>${wf:actionData('StartTransaction')['mdStoreVersion']}</arg>
+            <arg>--mdStoreManagerURI</arg><arg>${mdStoreManagerURI}</arg>
+        </java>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="EndReadRollBack">
+        <java>
+            <configuration>
+                <property>
+                    <name>oozie.launcher.mapreduce.user.classpath.first</name>
+                    <value>true</value>
+                </property>
+            </configuration>
+            <main-class>eu.dnetlib.dhp.aggregation.mdstore.MDStoreActionNode</main-class>
+            <arg>--action</arg><arg>READ_UNLOCK</arg>
+            <arg>--mdStoreManagerURI</arg><arg>${mdStoreManagerURI}</arg>
+            <arg>--readMDStoreId</arg><arg>${wf:actionData('BeginRead')['mdStoreReadLockVersion']}</arg>
+            <capture-output/>
+        </java>
+        <ok to="RollBack"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="RollBack">
+        <java>
+            <configuration>
+                <property>
+                    <name>oozie.launcher.mapreduce.user.classpath.first</name>
+                    <value>true</value>
+                </property>
+            </configuration>
+            <main-class>eu.dnetlib.dhp.aggregation.mdstore.MDStoreActionNode</main-class>
+            <arg>--action</arg><arg>ROLLBACK</arg>
+            <arg>--mdStoreVersion</arg><arg>${wf:actionData('StartTransaction')['mdStoreVersion']}</arg>
+            <arg>--mdStoreManagerURI</arg><arg>${mdStoreManagerURI}</arg>
+        </java>
+        <ok to="Kill"/>
+        <error to="Kill"/>
+    </action>
+
+    <end name="End"/>
+</workflow-app>
--- a/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/bioschema/BioschemaModelConstants.scala
+++ b/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/bioschema/BioschemaModelConstants.scala
@ -0,0 +1,308 @@
+package eu.dnetlib.dhp.bioschema
+
+import eu.dnetlib.dhp.schema.common.ModelConstants
+import eu.dnetlib.dhp.schema.oaf.{DataInfo, KeyValue, Qualifier}
+import eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils
+
+import java.time.format.DateTimeFormatter
+import java.util.Locale
+import java.util.regex.Pattern
+
+/*
+  The following class are utility class used for the mapping from
+  bioschema json datacite to OAF Schema
+ */
+
+case class RelatedIdentifierType(
+  relationType: String,
+  relatedIdentifier: String,
+  relatedIdentifierType: String
+) {}
+
+case class AlternateIdentifierType(
+  alternateIdentifier: String
+) {}
+
+case class IdentifierType(
+  identifier: String,
+  identifierType: String
+) {}
+
+case class NameIdentifiersType(
+  nameIdentifierScheme: Option[String],
+  schemeUri: Option[String],
+  nameIdentifier: Option[String]
+) {}
+
+case class CreatorType(
+  nameType: Option[String],
+  nameIdentifiers: Option[List[NameIdentifiersType]],
+  name: Option[String],
+  familyName: Option[String],
+  givenName: Option[String],
+  affiliation: Option[List[String]]
+) {}
+
+case class TitleType(title: Option[String], titleType: Option[String], lang: Option[String]) {}
+
+case class SubjectType(
+  schemeURI: Option[String],
+  value: Option[String],
+  subjectScheme: Option[String]
+) {}
+
+case class DescriptionType(descriptionType: Option[String], description: Option[String]) {}
+
+case class DateType(date: Option[String], dateType: Option[String]) {}
+
+case class OAFRelations(relation: String, inverse: String, relType: String)
+
+class BioschemaModelConstants extends Serializable {}
+
+object BioschemaModelConstants {
+
+  val PROTEIN_RESOURCETYPE: Qualifier =
+    qualifier("0046", "Bioentity", ModelConstants.DNET_PUBLICATION_RESOURCE, ModelConstants.DNET_PUBLICATION_RESOURCE)
+
+  val DATA_INFO: DataInfo = OafMapperUtils.dataInfo(
+    false,
+    null,
+    false,
+    false,
+    ModelConstants.PROVENANCE_ACTION_SET_QUALIFIER,
+    "0.9"
+  )
+
+  val PED_PREFIX: String = "fsh_____3595"
+  val DISPROT_PREFIX: String = "fsh_____1904"
+  val MOBIDB_PREFIX: String = "fsh_____2176"
+
+  val resolvedURLPattern: Map[String, String] = Map(
+    "https://identifiers.org/pubmed:"  -> "pmid",
+    "http://purl.uniprot.org/uniprot/" -> "uniprot",
+    "https://identifiers.org/uniprot:" -> "uniprot",
+    "https://identifiers.org/disprot:" -> "disprot",
+    "https://identifiers.org/mobidb:"  -> "mobidb",
+    "https://doi.org/"                 -> "doi"
+  )
+
+  val collectedFromMap: Map[String, KeyValue] = {
+    val PEDCollectedFrom: KeyValue = OafMapperUtils.keyValue(
+      "10|fairsharing_::c0e8517b1fe0b5270f3f41d4b56d6118",
+      "Protein Ensemble Database"
+    )
+    PEDCollectedFrom.setDataInfo(DATA_INFO)
+
+    val DISPROTCollectedFrom: KeyValue = OafMapperUtils.keyValue(
+      "10|fairsharing_::c91591a8d461c2869b9f535ded3e213e",
+      "Database of Protein Disorder"
+    )
+    DISPROTCollectedFrom.setDataInfo(DATA_INFO)
+
+    val MOBIDBCollectedFrom: KeyValue = OafMapperUtils.keyValue(
+      "10|fairsharing_::0234c510bc6d908b28c70ff313743079",
+      "MobiDB"
+    )
+    MOBIDBCollectedFrom.setDataInfo(DATA_INFO)
+
+    Map(
+      "ped"     -> PEDCollectedFrom,
+      "disprot" -> DISPROTCollectedFrom,
+      "mobidb"  -> MOBIDBCollectedFrom
+    )
+  }
+
+  val datasourceKeyPrefix: Map[String, String] = Map(
+    "ped"     -> PED_PREFIX,
+    "disprot" -> DISPROT_PREFIX,
+    "mobidb"  -> MOBIDB_PREFIX
+  )
+
+  val REL_TYPE_VALUE: String = "resultResult"
+  val DATE_RELATION_KEY = "RelationDate"
+  val dataInfo: DataInfo = bioschemaDataInfo("0.9")
+
+  val subRelTypeMapping: Map[String, OAFRelations] = Map(
+    ModelConstants.REFERENCES -> OAFRelations(
+      ModelConstants.REFERENCES,
+      ModelConstants.IS_REFERENCED_BY,
+      ModelConstants.RELATIONSHIP
+    ),
+    ModelConstants.IS_REFERENCED_BY -> OAFRelations(
+      ModelConstants.IS_REFERENCED_BY,
+      ModelConstants.REFERENCES,
+      ModelConstants.RELATIONSHIP
+    ),
+    ModelConstants.IS_SUPPLEMENTED_BY -> OAFRelations(
+      ModelConstants.IS_SUPPLEMENTED_BY,
+      ModelConstants.IS_SUPPLEMENT_TO,
+      ModelConstants.SUPPLEMENT
+    ),
+    ModelConstants.IS_SUPPLEMENT_TO -> OAFRelations(
+      ModelConstants.IS_SUPPLEMENT_TO,
+      ModelConstants.IS_SUPPLEMENTED_BY,
+      ModelConstants.SUPPLEMENT
+    ),
+    ModelConstants.HAS_PART -> OAFRelations(
+      ModelConstants.HAS_PART,
+      ModelConstants.IS_PART_OF,
+      ModelConstants.PART
+    ),
+    ModelConstants.IS_PART_OF -> OAFRelations(
+      ModelConstants.IS_PART_OF,
+      ModelConstants.HAS_PART,
+      ModelConstants.PART
+    ),
+    ModelConstants.IS_VERSION_OF -> OAFRelations(
+      ModelConstants.IS_VERSION_OF,
+      ModelConstants.HAS_VERSION,
+      ModelConstants.VERSION
+    ),
+    ModelConstants.HAS_VERSION -> OAFRelations(
+      ModelConstants.HAS_VERSION,
+      ModelConstants.IS_VERSION_OF,
+      ModelConstants.VERSION
+    ),
+    ModelConstants.IS_IDENTICAL_TO -> OAFRelations(
+      ModelConstants.IS_IDENTICAL_TO,
+      ModelConstants.IS_IDENTICAL_TO,
+      ModelConstants.RELATIONSHIP
+    ),
+    ModelConstants.IS_CONTINUED_BY -> OAFRelations(
+      ModelConstants.IS_CONTINUED_BY,
+      ModelConstants.CONTINUES,
+      ModelConstants.RELATIONSHIP
+    ),
+    ModelConstants.CONTINUES -> OAFRelations(
+      ModelConstants.CONTINUES,
+      ModelConstants.IS_CONTINUED_BY,
+      ModelConstants.RELATIONSHIP
+    ),
+    ModelConstants.IS_NEW_VERSION_OF -> OAFRelations(
+      ModelConstants.IS_NEW_VERSION_OF,
+      ModelConstants.IS_PREVIOUS_VERSION_OF,
+      ModelConstants.VERSION
+    ),
+    ModelConstants.IS_PREVIOUS_VERSION_OF -> OAFRelations(
+      ModelConstants.IS_PREVIOUS_VERSION_OF,
+      ModelConstants.IS_NEW_VERSION_OF,
+      ModelConstants.VERSION
+    ),
+    ModelConstants.IS_DOCUMENTED_BY -> OAFRelations(
+      ModelConstants.IS_DOCUMENTED_BY,
+      ModelConstants.DOCUMENTS,
+      ModelConstants.RELATIONSHIP
+    ),
+    ModelConstants.DOCUMENTS -> OAFRelations(
+      ModelConstants.DOCUMENTS,
+      ModelConstants.IS_DOCUMENTED_BY,
+      ModelConstants.RELATIONSHIP
+    ),
+    ModelConstants.IS_SOURCE_OF -> OAFRelations(
+      ModelConstants.IS_SOURCE_OF,
+      ModelConstants.IS_DERIVED_FROM,
+      ModelConstants.VERSION
+    ),
+    ModelConstants.IS_DERIVED_FROM -> OAFRelations(
+      ModelConstants.IS_DERIVED_FROM,
+      ModelConstants.IS_SOURCE_OF,
+      ModelConstants.VERSION
+    ),
+    ModelConstants.CITES -> OAFRelations(
+      ModelConstants.CITES,
+      ModelConstants.IS_CITED_BY,
+      ModelConstants.CITATION
+    ),
+    ModelConstants.IS_CITED_BY -> OAFRelations(
+      ModelConstants.IS_CITED_BY,
+      ModelConstants.CITES,
+      ModelConstants.CITATION
+    ),
+    ModelConstants.IS_VARIANT_FORM_OF -> OAFRelations(
+      ModelConstants.IS_VARIANT_FORM_OF,
+      ModelConstants.IS_DERIVED_FROM,
+      ModelConstants.VERSION
+    ),
+    ModelConstants.IS_OBSOLETED_BY -> OAFRelations(
+      ModelConstants.IS_OBSOLETED_BY,
+      ModelConstants.IS_NEW_VERSION_OF,
+      ModelConstants.VERSION
+    ),
+    ModelConstants.REVIEWS -> OAFRelations(
+      ModelConstants.REVIEWS,
+      ModelConstants.IS_REVIEWED_BY,
+      ModelConstants.REVIEW
+    ),
+    ModelConstants.IS_REVIEWED_BY -> OAFRelations(
+      ModelConstants.IS_REVIEWED_BY,
+      ModelConstants.REVIEWS,
+      ModelConstants.REVIEW
+    ),
+    ModelConstants.DOCUMENTS -> OAFRelations(
+      ModelConstants.DOCUMENTS,
+      ModelConstants.IS_DOCUMENTED_BY,
+      ModelConstants.RELATIONSHIP
+    ),
+    ModelConstants.IS_DOCUMENTED_BY -> OAFRelations(
+      ModelConstants.IS_DOCUMENTED_BY,
+      ModelConstants.DOCUMENTS,
+      ModelConstants.RELATIONSHIP
+    ),
+    ModelConstants.COMPILES -> OAFRelations(
+      ModelConstants.COMPILES,
+      ModelConstants.IS_COMPILED_BY,
+      ModelConstants.RELATIONSHIP
+    ),
+    ModelConstants.IS_COMPILED_BY -> OAFRelations(
+      ModelConstants.IS_COMPILED_BY,
+      ModelConstants.COMPILES,
+      ModelConstants.RELATIONSHIP
+    )
+  )
+
+  def bioschemaDataInfo(trust: String): DataInfo = OafMapperUtils.dataInfo(
+    false,
+    null,
+    false,
+    false,
+    ModelConstants.PROVENANCE_ACTION_SET_QUALIFIER,
+    trust
+  )
+
+  val df_en: DateTimeFormatter = DateTimeFormatter.ofPattern(
+    "[MM-dd-yyyy][MM/dd/yyyy][dd-MM-yy][dd-MMM-yyyy][dd/MMM/yyyy][dd-MMM-yy][dd/MMM/yy][dd-MM-yy][dd/MM/yy][dd-MM-yyyy][dd/MM/yyyy][yyyy-MM-dd][yyyy/MM/dd]",
+    Locale.ENGLISH
+  )
+
+  val df_it: DateTimeFormatter =
+    DateTimeFormatter.ofPattern("[dd-MM-yyyy][dd/MM/yyyy]", Locale.ITALIAN)
+
+  val Date_regex: List[Pattern] = List(
+    //Y-M-D
+    Pattern.compile(
+      "(18|19|20)\\d\\d([- /.])(0[1-9]|1[012])\\2(0[1-9]|[12][0-9]|3[01])",
+      Pattern.MULTILINE
+    ),
+    //M-D-Y
+    Pattern.compile(
+      "((0[1-9]|1[012])|([1-9]))([- /.])(0[1-9]|[12][0-9]|3[01])([- /.])(18|19|20)?\\d\\d",
+      Pattern.MULTILINE
+    ),
+    //D-M-Y
+    Pattern.compile(
+      "(?:(?:31(/|-|\\.)(?:0?[13578]|1[02]|(?:Jan|Mar|May|Jul|Aug|Oct|Dec)))\\1|(?:(?:29|30)(/|-|\\.)(?:0?[1,3-9]|1[0-2]|(?:Jan|Mar|Apr|May|Jun|Jul|Aug|Sep|Oct|Nov|Dec))\\2))(?:(?:1[6-9]|[2-9]\\d)?\\d{2})|(?:29(/|-|\\.)(?:0?2|(?:Feb))\\3(?:(?:(?:1[6-9]|[2-9]\\d)?(?:0[48]|[2468][048]|[13579][26])|(?:(?:16|[2468][048]|[3579][26])00))))|(?:0?[1-9]|1\\d|2[0-8])(/|-|\\.)(?:(?:0?[1-9]|(?:Jan|Feb|Mar|Apr|May|Jun|Jul|Aug|Sep))|(?:1[0-2]|(?:Oct|Nov|Dec)))\\4(?:(?:1[6-9]|[2-9]\\d)?\\d{2})",
+      Pattern.MULTILINE
+    ),
+    //Y
+    Pattern.compile("(19|20)\\d\\d", Pattern.MULTILINE)
+  )
+
+  private def qualifier(classid: String, classname: String, schemeid: String, schemename: String) = {
+    val q = new Qualifier
+    q.setClassid(classid)
+    q.setClassname(classname)
+    q.setSchemeid(schemeid)
+    q.setSchemename(schemename)
+    q
+  }
+}
--- a/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/bioschema/BioschemaToOAFTransformation.scala
+++ b/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/bioschema/BioschemaToOAFTransformation.scala
@ -0,0 +1,308 @@
+package eu.dnetlib.dhp.bioschema
+
+import com.fasterxml.jackson.databind.ObjectMapper
+import eu.dnetlib.dhp.bioschema.BioschemaModelConstants._
+import eu.dnetlib.dhp.schema.common.ModelConstants
+import eu.dnetlib.dhp.schema.oaf.utils.{IdentifierFactory, OafMapperUtils}
+import eu.dnetlib.dhp.schema.oaf.{Dataset => OafDataset, _}
+import eu.dnetlib.dhp.utils.DHPUtils
+import org.apache.commons.lang3.StringUtils
+import org.json4s.DefaultFormats
+import org.json4s.JsonAST.{JField, JObject, JString}
+import org.json4s.jackson.JsonMethods.parse
+
+import java.time.LocalDate
+import scala.collection.JavaConverters._
+
+object BioschemaToOAFTransformation {
+
+  val mapper = new ObjectMapper()
+
+  def extract_date(input: String): Option[String] = {
+    val d = Date_regex
+      .map(pattern => {
+        val matcher = pattern.matcher(input)
+        if (matcher.find())
+          matcher.group(0)
+        else
+          null
+      })
+      .find(s => s != null)
+
+    if (d.isDefined) {
+      val a_date = if (d.get.length == 4) s"01-01-${d.get}" else d.get
+      try {
+        return Some(LocalDate.parse(a_date, df_en).toString)
+      } catch {
+        case _: Throwable =>
+          try {
+            return Some(LocalDate.parse(a_date, df_it).toString)
+          } catch {
+            case _: Throwable =>
+              return None
+          }
+      }
+    }
+    d
+  }
+
+  def getResult(resourceClassName: String): Result = {
+    val i = new Instance
+    resourceClassName.toUpperCase() match {
+      case "PROTEIN" =>
+        i.setInstancetype(
+          PROTEIN_RESOURCETYPE
+        )
+        val d = new OafDataset
+        d.setInstance(List(i).asJava)
+        d.setResourcetype(
+          PROTEIN_RESOURCETYPE
+        )
+        return d
+    }
+    null
+  }
+
+  def generateOAFDate(dt: String, q: Qualifier): StructuredProperty = {
+    OafMapperUtils.structuredProperty(dt, q, null)
+  }
+
+  def generateOAF(
+    input: String,
+    exportLinks: Boolean,
+    datasourceKey: String,
+    resourceClassName: String
+  ): List[Oaf] = {
+
+    implicit lazy val formats: DefaultFormats.type = org.json4s.DefaultFormats
+    lazy val json = parse(input)
+
+    val result = getResult(resourceClassName)
+    if (result == null)
+      return List()
+
+    val pid = (json \ "id").extract[String]
+
+    result.setPid(
+      List(
+        OafMapperUtils.structuredProperty(
+          pid,
+          datasourceKey,
+          datasourceKey,
+          ModelConstants.DNET_PID_TYPES,
+          ModelConstants.DNET_PID_TYPES,
+          DATA_INFO
+        )
+      ).asJava
+    )
+    result.setId(OafMapperUtils.createOpenaireId(50, s"${datasourceKeyPrefix(datasourceKey)}::$pid", true))
+    result.setOriginalId(List(pid).asJava)
+    result.setDataInfo(dataInfo)
+
+    val titles: List[TitleType] = (json \\ "titles").extractOrElse[List[TitleType]](List())
+    if (titles.isEmpty) {
+      throw new RuntimeException("Title not found")
+    }
+    result.setTitle(
+      titles
+        .filter(t => t.title.nonEmpty)
+        .map(t => {
+          OafMapperUtils
+            .structuredProperty(t.title.get, ModelConstants.MAIN_TITLE_QUALIFIER, dataInfo)
+        })
+        .asJava
+    )
+
+    val dates = (json \\ "dates").extract[List[DateType]]
+
+    val collected_date = dates
+      .filter(d => d.date.isDefined && d.dateType.isDefined)
+      .find(d => d.dateType.get.equalsIgnoreCase("collected"))
+      .map(d => extract_date(d.date.get))
+      .find(d => d != null && d.isDefined)
+      .map(d => d.get)
+    if (collected_date.isDefined) {
+      result.setDateofcollection(collected_date.get)
+    }
+
+    result.setRelevantdate(
+      dates
+        .filter(d => d.date.isDefined && d.dateType.isDefined)
+        .map(d => (extract_date(d.date.get), d.dateType.get))
+        .filter(d => d._1.isDefined)
+        .map(d =>
+          (
+            d._1.get,
+            OafMapperUtils.qualifier(
+              d._2.toLowerCase(),
+              d._2.toLowerCase(),
+              ModelConstants.DNET_DATACITE_DATE,
+              ModelConstants.DNET_DATACITE_DATE
+            )
+          )
+        )
+        .filter(d => d._2 != null)
+        .map(d => generateOAFDate(d._1, d._2))
+        .asJava
+    )
+
+    result.setCollectedfrom(List(collectedFromMap(datasourceKey)).asJava)
+
+    val descriptions = (json \\ "descriptions").extract[List[DescriptionType]]
+
+    result.setDescription(
+      descriptions
+        .filter(d => d.description.isDefined)
+        .map(d => OafMapperUtils.field(d.description.get, null))
+        .filter(s => s != null)
+        .asJava
+    )
+
+    val subjects = (json \\ "subjects").extract[List[SubjectType]]
+
+    result.setSubject(
+      subjects
+        .filter(s => s.value.nonEmpty && s.subjectScheme.nonEmpty && s.schemeURI.nonEmpty)
+        .map(s =>
+          OafMapperUtils.structuredProperty(
+            s.value.get,
+            s.subjectScheme.get,
+            s.schemeURI.get,
+            ModelConstants.DNET_SUBJECT_TYPOLOGIES,
+            ModelConstants.DNET_SUBJECT_TYPOLOGIES,
+            null
+          )
+        )
+        .asJava
+    )
+
+    val instance = result.getInstance().get(0)
+
+    val ids: List[IdentifierType] = for {
+      JObject(identifiers)                              <- json \\ "identifiers"
+      JField("identifier", JString(identifier))         <- identifiers
+      JField("identifierType", JString(identifierType)) <- identifiers
+    } yield IdentifierType(identifier, identifierType)
+
+    instance.setUrl(
+      ids
+        .map(id => {
+          id.identifier
+        })
+        .asJava
+    )
+    if (instance.getUrl.isEmpty) {
+      throw new RuntimeException("Url not found")
+    }
+    instance.setCollectedfrom(collectedFromMap(datasourceKey))
+    instance.setHostedby(collectedFromMap(datasourceKey))
+
+    instance.setPid(result.getPid)
+
+    result.setId(IdentifierFactory.createIdentifier(result))
+    var relations: List[Relation] = List()
+
+    if (result.getId == null)
+      return List()
+
+    val alternativeIdentifierUrls: List[AlternateIdentifierType] = for {
+      JObject(alternateIdentifiers)                               <- json \\ "alternateIdentifiers"
+      JField("alternateIdentifier", JString(alternateIdentifier)) <- alternateIdentifiers
+    } yield AlternateIdentifierType(alternateIdentifier)
+
+    val alternativeIdentifierUrl: AlternateIdentifierType = alternativeIdentifierUrls.asJava.get(0)
+
+    val alternativeIdentifiers = resolvedURLPattern
+      .filter(pattern => !pattern._1.contains(datasourceKey))
+      .map(pattern => {
+        if (alternativeIdentifierUrl.alternateIdentifier.startsWith(s"${pattern._1}")) {
+          val relatedId = StringUtils.substringAfter(alternativeIdentifierUrl.alternateIdentifier, s"${pattern._1}")
+          OafMapperUtils.structuredProperty(
+            relatedId,
+            pattern._2,
+            pattern._2,
+            ModelConstants.DNET_PID_TYPES,
+            ModelConstants.DNET_PID_TYPES,
+            dataInfo
+          )
+        } else
+          null
+      })
+      .find(s => s != null)
+
+    if (alternativeIdentifiers.isDefined) {
+      instance.setAlternateIdentifier(List(alternativeIdentifiers.get).asJava)
+    }
+
+    val access_rights_qualifier =
+      OafMapperUtils.accessRight(
+        ModelConstants.UNKNOWN,
+        ModelConstants.NOT_AVAILABLE,
+        ModelConstants.DNET_ACCESS_MODES,
+        ModelConstants.DNET_ACCESS_MODES
+      )
+    instance.setAccessright(access_rights_qualifier)
+
+    if (exportLinks) {
+      val rels: List[RelatedIdentifierType] = for {
+        JObject(relIdentifier)                                          <- json \\ "relatedIdentifiers"
+        JField("relationType", JString(relationType))                   <- relIdentifier
+        JField("relatedIdentifierType", JString(relatedIdentifierType)) <- relIdentifier
+        JField("relatedIdentifier", JString(relatedIdentifier))         <- relIdentifier
+      } yield RelatedIdentifierType(relationType, relatedIdentifier, relatedIdentifierType)
+
+      relations = relations ::: generateRelations(
+        rels,
+        result.getId,
+        null,
+        pid,
+        datasourceKey
+      )
+
+    }
+    if (relations != null && relations.nonEmpty) {
+      List(result) ::: relations
+    } else
+      List(result)
+  }
+
+  private def generateRelations(
+    rels: List[RelatedIdentifierType],
+    id: String,
+    date: String,
+    pid: String,
+    datasourceKey: String
+  ): List[Relation] = {
+    rels
+      .map(r => {
+        val rel = new Relation
+        rel.setCollectedfrom(List(collectedFromMap(datasourceKey)).asJava)
+        rel.setDataInfo(dataInfo)
+
+        val subRelType = subRelTypeMapping(r.relationType).relType
+        rel.setRelType(REL_TYPE_VALUE)
+        rel.setSubRelType(subRelType)
+        rel.setRelClass(r.relationType)
+
+        val dateProps: KeyValue = OafMapperUtils.keyValue(DATE_RELATION_KEY, date)
+
+        rel.setProperties(List(dateProps).asJava)
+
+        resolvedURLPattern
+          .map(p => {
+            if (r.relatedIdentifier.startsWith(s"${p._1}")) {
+              val relatedId = StringUtils.substringAfter(r.relatedIdentifier, s"${p._1}")
+              rel.setTarget(
+                DHPUtils.generateUnresolvedIdentifier(relatedId, p._2)
+              )
+            } else
+              null
+          })
+          .find(s => s != null)
+        rel.setSource(id)
+        rel.setCollectedfrom(List(collectedFromMap(datasourceKey)).asJava)
+        rel.getCollectedfrom.asScala.map(c => c.getValue).toList
+        rel
+      })
+  }
+}
--- a/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/bioschema/GenerateBioschemaDatasetSpark.scala
+++ b/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/bioschema/GenerateBioschemaDatasetSpark.scala
@ -0,0 +1,99 @@
+package eu.dnetlib.dhp.bioschema
+
+import com.fasterxml.jackson.databind.ObjectMapper
+import eu.dnetlib.dhp.application.AbstractScalaApplication
+import eu.dnetlib.dhp.collection.CollectionUtils
+import eu.dnetlib.dhp.common.Constants.{MDSTORE_DATA_PATH, MDSTORE_SIZE_PATH}
+import eu.dnetlib.dhp.schema.mdstore.MDStoreVersion
+import eu.dnetlib.dhp.schema.oaf.Oaf
+import eu.dnetlib.dhp.utils.DHPUtils.writeHdfsFile
+import org.apache.spark.sql.{Encoder, Encoders, SparkSession}
+import org.slf4j.{Logger, LoggerFactory}
+
+class GenerateBioschemaDatasetSpark(propertyPath: String, args: Array[String], log: Logger)
+    extends AbstractScalaApplication(propertyPath, args, log: Logger) {
+
+  /** Here all the spark applications runs this method
+    * where the whole logic of the spark node is defined
+    */
+  override def run(): Unit = {
+
+    val sourcePath = parser.get("sourcePath")
+    log.info(s"SourcePath is '$sourcePath'")
+    val exportLinks = "true".equalsIgnoreCase(parser.get("exportLinks"))
+    log.info(s"exportLinks is '$exportLinks'")
+    val datasourceKey = parser.get("datasourceKey").toLowerCase
+    log.info(s"datasourceKey is '$datasourceKey'")
+    val profile = parser.get("profile").toLowerCase
+    log.info(s"profile is '$profile'")
+
+//    val mdstoreOutputVersion = parser.get("mdstoreOutputVersion")
+//    log.info(s"mdstoreOutputVersion is '$mdstoreOutputVersion'")
+//    val mapper = new ObjectMapper()
+//    val cleanedMdStoreVersion = mapper.readValue(mdstoreOutputVersion, classOf[MDStoreVersion])
+//    val outputBasePath = cleanedMdStoreVersion.getHdfsPath
+//    log.info(s"outputBasePath is '$outputBasePath'")
+//    val targetPath = s"$outputBasePath$MDSTORE_DATA_PATH"
+//    log.info(s"targetPath is '$targetPath'")
+
+    val targetPath = parser.get("targetPath")
+
+    generateBioschemaDataset(sourcePath, exportLinks, targetPath, datasourceKey, profile, spark)
+
+//    reportTotalSize(targetPath, outputBasePath)
+  }
+
+  /** For working with MDStore we need to store in a file on hdfs the size of
+    * the current dataset
+    * @param targetPath
+    * @param outputBasePath
+    */
+  def reportTotalSize(targetPath: String, outputBasePath: String): Unit = {
+    val total_items = spark.read.text(targetPath).count()
+    writeHdfsFile(
+      spark.sparkContext.hadoopConfiguration,
+      s"$total_items",
+      outputBasePath + MDSTORE_SIZE_PATH
+    )
+  }
+
+  /** Generate the transformed and cleaned OAF Dataset from the native one
+    *
+    * @param sourcePath  sourcePath of the native Dataset in format JSON/Datacite
+    * @param exportLinks If true it generates unresolved links
+    * @param targetPath the targetPath of the result Dataset
+    */
+  def generateBioschemaDataset(
+    sourcePath: String,
+    exportLinks: Boolean,
+    targetPath: String,
+    datasourceKey: String,
+    profile: String,
+    spark: SparkSession
+  ): Unit = {
+    require(spark != null)
+
+    implicit val resultEncoder: Encoder[Oaf] = Encoders.kryo(classOf[Oaf])
+    CollectionUtils.saveDataset(
+      spark.createDataset(
+        spark.sparkContext
+          .textFile(sourcePath)
+          .flatMap(i => BioschemaToOAFTransformation.generateOAF(i, exportLinks, datasourceKey, profile))
+      ),
+      targetPath
+    )
+  }
+}
+
+object GenerateBioschemaDatasetSpark {
+
+  val log: Logger = LoggerFactory.getLogger(GenerateBioschemaDatasetSpark.getClass)
+
+  def main(args: Array[String]): Unit = {
+    new GenerateBioschemaDatasetSpark(
+      "/eu/dnetlib/dhp/bioschema/generate_dataset_params.json",
+      args,
+      log
+    ).initialize().run()
+  }
+}
--- a/dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/bioschema/disprot_record.json
+++ b/dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/bioschema/disprot_record.json
@ -0,0 +1,45 @@
+{
+  "id": "DP01454",
+  "types": {
+    "resourceType": "Protein",
+    "resourceTypeGeneral": "Dataset"
+  },
+  "creators": [],
+  "identifiers": [
+    {
+      "identifier": "https://disprot.org/DP01454",
+      "identifierType": "URL"
+    }
+  ],
+  "relatedIdentifiers": [
+    {
+      "relationType": "IsIdenticalTo",
+      "relatedIdentifier": "http://purl.uniprot.org/uniprot/P60006",
+      "relatedIdentifierType": "URL"
+    }
+  ],
+  "alternateIdentifiers": [
+    {
+      "alternateIdentifier": "https://identifiers.org/disprot:DP01454"
+    }
+  ],
+  "descriptions": [],
+  "titles": [
+    {
+      "title": "DP01454 -  Anaphase-promoting complex subunit 15 "
+    }
+  ],
+  "dates": [
+    {
+      "date": "2021-11-25T12:23:57",
+      "dateType": "Collected"
+    }
+  ],
+  "subjects": [
+    {
+      "schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00076",
+      "value": "disorder",
+      "subjectScheme": "IDPO:00076"
+    }
+  ]
+}
--- a/dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/bioschema/mobidb_record.json
+++ b/dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/bioschema/mobidb_record.json
@ -0,0 +1,75 @@
+{
+  "id": "Q9UPN6",
+  "types": {
+    "resourceType": "Protein",
+    "resourceTypeGeneral": "Dataset"
+  },
+  "creators": [],
+  "identifiers": [
+    {
+      "identifier": "https://mobidb.org/Q9UPN6",
+      "identifierType": "URL"
+    }
+  ],
+  "relatedIdentifiers": [
+    {
+      "relationType": "IsIdenticalTo",
+      "relatedIdentifier": "http://purl.uniprot.org/uniprot/Q9UPN6",
+      "relatedIdentifierType": "URL"
+    }
+  ],
+  "alternateIdentifiers": [
+    {
+      "alternateIdentifier": "https://identifiers.org/mobidb:Q9UPN6"
+    }
+  ],
+  "descriptions": [],
+  "titles": [
+    {
+      "title": "Q9UPN6 -  SR-related and CTD-associated factor 8 "
+    }
+  ],
+  "dates": [
+    {
+      "date": "2021-12-06T14:49:15",
+      "dateType": "Collected"
+    }
+  ],
+  "subjects": [
+    {
+      "schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00076",
+      "value": "Disorder",
+      "subjectScheme": "IDPO:00076"
+    },
+    {
+      "schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00076",
+      "value": "Disorder",
+      "subjectScheme": "IDPO:00076"
+    },
+    {
+      "schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00076",
+      "value": "Disorder",
+      "subjectScheme": "IDPO:00076"
+    },
+    {
+      "schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00076",
+      "value": "Disorder",
+      "subjectScheme": "IDPO:00076"
+    },
+    {
+      "schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00076",
+      "value": "Disorder",
+      "subjectScheme": "IDPO:00076"
+    },
+    {
+      "schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00076",
+      "value": "Disorder",
+      "subjectScheme": "IDPO:00076"
+    },
+    {
+      "schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00076",
+      "value": "Disorder",
+      "subjectScheme": "IDPO:00076"
+    }
+  ]
+}
--- a/dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/bioschema/ped_doi_citation.json
+++ b/dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/bioschema/ped_doi_citation.json
@ -0,0 +1,80 @@
+{
+  "id": "PED00180#Q9KPH3_A_0",
+  "types": {
+    "resourceType": "Protein",
+    "resourceTypeGeneral": "Dataset"
+  },
+  "creators": [],
+  "identifiers": [
+    {
+      "identifier": "https://proteinensemble.org/PED00180#Q9KPH3_A_0",
+      "identifierType": "URL"
+    }
+  ],
+  "relatedIdentifiers": [
+    {
+      "relationType": "IsCitedBy",
+      "relatedIdentifier": "https://doi.org/10.1016/j.jsb.2020.107573",
+      "relatedIdentifierType": "URL"
+    },
+    {
+      "relationType": "IsIdenticalTo",
+      "relatedIdentifier": "http://purl.uniprot.org/uniprot/Q9KPH3",
+      "relatedIdentifierType": "URL"
+    }
+  ],
+  "alternateIdentifiers": [
+    {
+      "alternateIdentifier": "https://identifiers.org/uniprot:Q9KPH3"
+    }
+  ],
+  "descriptions": [],
+  "titles": [
+    {
+      "title": "PED00180#Q9KPH3_A_0 - Structural ensemble of protein DciA from Vibrio cholerae (1-157) "
+    }
+  ],
+  "dates": [
+    {
+      "date": "2022-05-10T18:03:43",
+      "dateType": "Collected"
+    }
+  ],
+  "subjects": [
+    {
+      "schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00120",
+      "value": "NMR",
+      "subjectScheme": "IDPO:00120"
+    },
+    {
+      "schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00125",
+      "value": "SAXS",
+      "subjectScheme": "IDPO:00125"
+    },
+    {
+      "schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00224",
+      "value": "GROMACS",
+      "subjectScheme": "IDPO:00224"
+    },
+    {
+      "schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00228",
+      "value": "AMBER",
+      "subjectScheme": "IDPO:00228"
+    },
+    {
+      "schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl:00185",
+      "value": "FM",
+      "subjectScheme": "IDPO:00185"
+    },
+    {
+      "schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl:00213",
+      "value": "EOM",
+      "subjectScheme": "IDPO:00213"
+    },
+    {
+      "schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl:00214",
+      "value": "GAJOE",
+      "subjectScheme": "IDPO:00214"
+    }
+  ]
+}
--- a/dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/bioschema/ped_dump
+++ b/dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/bioschema/ped_dump
@ -0,0 +1,5 @@
+{"id":"PED00111#O75880_A_1","types":{"resourceType":"Protein","resourceTypeGeneral":"Dataset"},"creators":[],"identifiers":[{"identifier":"https://proteinensemble.org/PED00111#O75880_A_1","identifierType":"URL"}],"relatedIdentifiers":[{"relationType":"IsCitedBy","relatedIdentifier":"https://identifiers.org/pubmed:16735468","relatedIdentifierType":"URL"},{"relationType":"IsIdenticalTo","relatedIdentifier":"http://purl.uniprot.org/uniprot/O75880","relatedIdentifierType":"URL"}],"alternateIdentifiers":[{"alternateIdentifier":"https://identifiers.org/uniprot:O75880"}],"descriptions":[],"titles":[{"title":"PED00111#O75880_A_1 - Structural ensemble of the C-terminal region of Sco1 (132-301), apo structure."}],"dates":[{"date":"2021-12-10T11:17:16","dateType":"Collected"}],"subjects":[{"schemeURI":"https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00120","value":"NMR","subjectScheme":"IDPO:00120"},{"schemeURI":"https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00141","value":"TOCSY","subjectScheme":"IDPO:00141"},{"schemeURI":"https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00143","value":"NOESY","subjectScheme":"IDPO:00143"},{"schemeURI":"https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00147","value":"HSQC","subjectScheme":"IDPO:00147"},{"schemeURI":"https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00153","value":"HNHA","subjectScheme":"IDPO:00153"},{"schemeURI":"https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00154","value":"HNCO","subjectScheme":"IDPO:00154"},{"schemeURI":"https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00155","value":"HNCA","subjectScheme":"IDPO:00155"},{"schemeURI":"https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00156","value":"HNCACO","subjectScheme":"IDPO:00156"},{"schemeURI":"https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00157","value":"HNCOCA","subjectScheme":"IDPO:00157"},{"schemeURI":"https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00158","value":"HNCACB","subjectScheme":"IDPO:00158"},{"schemeURI":"https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00160","value":"CBCACONH","subjectScheme":"IDPO:00160"},{"schemeURI":"https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00164","value":"CBCANH","subjectScheme":"IDPO:00164"},{"schemeURI":"https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00175","value":"NOE","subjectScheme":"IDPO:00175"},{"schemeURI":"https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00228","value":"AMBER","subjectScheme":"IDPO:00228"},{"schemeURI":"https://disprot.org/assets/data/IDPO_v0.2.owl:00190","value":"DYANA","subjectScheme":"IDPO:00190"}]}
+{"id":"PED00112#P19634_A_1","types":{"resourceType":"Protein","resourceTypeGeneral":"Dataset"},"creators":[],"identifiers":[{"identifier":"https://proteinensemble.org/PED00112#P19634_A_1","identifierType":"URL"}],"relatedIdentifiers":[{"relationType":"IsCitedBy","relatedIdentifier":"https://identifiers.org/pubmed:24840010","relatedIdentifierType":"URL"},{"relationType":"IsIdenticalTo","relatedIdentifier":"http://purl.uniprot.org/uniprot/P19634","relatedIdentifierType":"URL"}],"alternateIdentifiers":[{"alternateIdentifier":"https://identifiers.org/uniprot:P19634"}],"descriptions":[],"titles":[{"title":"PED00112#P19634_A_1 - Structural ensemble of the TM VI-VII of the nhe1 isoform of the sodium/hydrogen exchanger (226-274)"}],"dates":[{"date":"2021-12-10T11:17:20","dateType":"Collected"}],"subjects":[{"schemeURI":"https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00120","value":"NMR","subjectScheme":"IDPO:00120"},{"schemeURI":"https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00141","value":"TOCSY","subjectScheme":"IDPO:00141"},{"schemeURI":"https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00143","value":"NOESY","subjectScheme":"IDPO:00143"},{"schemeURI":"https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00147","value":"HSQC","subjectScheme":"IDPO:00147"},{"schemeURI":"https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00167","value":"chemical shift","subjectScheme":"IDPO:00167"},{"schemeURI":"https://disprot.org/assets/data/IDPO_v0.2.owl:00188","value":"Structure calculation","subjectScheme":"IDPO:00188"},{"schemeURI":"https://disprot.org/assets/data/IDPO_v0.2.owl:00202","value":"NMRpipe","subjectScheme":"IDPO:00202"}]}
+{"id":"PED00113#P04156_A_0","types":{"resourceType":"Protein","resourceTypeGeneral":"Dataset"},"creators":[],"identifiers":[{"identifier":"https://proteinensemble.org/PED00113#P04156_A_0","identifierType":"URL"}],"relatedIdentifiers":[{"relationType":"IsIdenticalTo","relatedIdentifier":"http://purl.uniprot.org/uniprot/P04156","relatedIdentifierType":"URL"}],"alternateIdentifiers":[{"alternateIdentifier":"https://identifiers.org/uniprot:P04156"}],"descriptions":[],"titles":[{"title":"PED00113#P04156_A_0 - Structural ensemble of major prion protein (173-195)"}],"dates":[{"date":"2021-12-10T11:17:24","dateType":"Collected"}],"subjects":[{"schemeURI":"https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00120","value":"NMR","subjectScheme":"IDPO:00120"}]}
+{"id":"PED00114#P27958_A_0","types":{"resourceType":"Protein","resourceTypeGeneral":"Dataset"},"creators":[],"identifiers":[{"identifier":"https://proteinensemble.org/PED00114#P27958_A_0","identifierType":"URL"}],"relatedIdentifiers":[{"relationType":"IsCitedBy","relatedIdentifier":"https://identifiers.org/pubmed:15247283","relatedIdentifierType":"URL"},{"relationType":"IsIdenticalTo","relatedIdentifier":"http://purl.uniprot.org/uniprot/P27958","relatedIdentifierType":"URL"}],"alternateIdentifiers":[{"alternateIdentifier":"https://identifiers.org/uniprot:P27958"}],"descriptions":[],"titles":[{"title":"PED00114#P27958_A_0 - Structural ensemble of the membrane anchor domain of the nonstructural protein 5A (NS5A) of hepatitis C virus (1973-2003), in 50% tfe"}],"dates":[{"date":"2021-12-10T11:17:27","dateType":"Collected"}],"subjects":[{"schemeURI":"https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00120","value":"NMR","subjectScheme":"IDPO:00120"},{"schemeURI":"https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00141","value":"TOCSY","subjectScheme":"IDPO:00141"},{"schemeURI":"https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00143","value":"NOESY","subjectScheme":"IDPO:00143"},{"schemeURI":"https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00147","value":"HSQC","subjectScheme":"IDPO:00147"},{"schemeURI":"https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00175","value":"NOE","subjectScheme":"IDPO:00175"},{"schemeURI":"https://disprot.org/assets/data/IDPO_v0.2.owl:00194","value":"X-PLOR","subjectScheme":"IDPO:00194"}]}
+{"id":"PED00115#P04156_A_0","types":{"resourceType":"Protein","resourceTypeGeneral":"Dataset"},"creators":[],"identifiers":[{"identifier":"https://proteinensemble.org/PED00115#P04156_A_0","identifierType":"URL"}],"relatedIdentifiers":[{"relationType":"IsIdenticalTo","relatedIdentifier":"http://purl.uniprot.org/uniprot/P04156","relatedIdentifierType":"URL"}],"alternateIdentifiers":[{"alternateIdentifier":"https://identifiers.org/uniprot:P04156"}],"descriptions":[],"titles":[{"title":"PED00115#P04156_A_0 - Structural ensemble of major prion protein (173-195), mutant D178N"}],"dates":[{"date":"2021-12-10T11:17:30","dateType":"Collected"}],"subjects":[{"schemeURI":"https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00120","value":"NMR","subjectScheme":"IDPO:00120"}]}
--- a/dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/bioschema/ped_record.json
+++ b/dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/bioschema/ped_record.json
@ -0,0 +1,120 @@
+{
+  "id": "PED00111#O75880_A_1",
+  "types": {
+    "resourceType": "Protein",
+    "resourceTypeGeneral": "Dataset"
+  },
+  "creators": [],
+  "identifiers": [
+    {
+      "identifier": "https://proteinensemble.org/PED00111#O75880_A_1",
+      "identifierType": "URL"
+    }
+  ],
+  "relatedIdentifiers": [
+    {
+      "relationType": "IsCitedBy",
+      "relatedIdentifier": "https://identifiers.org/pubmed:16735468",
+      "relatedIdentifierType": "URL"
+    },
+    {
+      "relationType": "IsIdenticalTo",
+      "relatedIdentifier": "http://purl.uniprot.org/uniprot/O75880",
+      "relatedIdentifierType": "URL"
+    }
+  ],
+  "alternateIdentifiers": [
+    {
+      "alternateIdentifier": "https://identifiers.org/uniprot:O75880"
+    }
+  ],
+  "descriptions": [],
+  "titles": [
+    {
+      "title": "PED00111#O75880_A_1 - Structural ensemble of the C-terminal region of Sco1 (132-301), apo structure."
+    }
+  ],
+  "dates": [
+    {
+      "date": "2021-12-10T11:17:16",
+      "dateType": "Collected"
+    }
+  ],
+  "subjects": [
+    {
+      "schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00120",
+      "value": "NMR",
+      "subjectScheme": "IDPO:00120"
+    },
+    {
+      "schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00141",
+      "value": "TOCSY",
+      "subjectScheme": "IDPO:00141"
+    },
+    {
+      "schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00143",
+      "value": "NOESY",
+      "subjectScheme": "IDPO:00143"
+    },
+    {
+      "schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00147",
+      "value": "HSQC",
+      "subjectScheme": "IDPO:00147"
+    },
+    {
+      "schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00153",
+      "value": "HNHA",
+      "subjectScheme": "IDPO:00153"
+    },
+    {
+      "schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00154",
+      "value": "HNCO",
+      "subjectScheme": "IDPO:00154"
+    },
+    {
+      "schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00155",
+      "value": "HNCA",
+      "subjectScheme": "IDPO:00155"
+    },
+    {
+      "schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00156",
+      "value": "HNCACO",
+      "subjectScheme": "IDPO:00156"
+    },
+    {
+      "schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00157",
+      "value": "HNCOCA",
+      "subjectScheme": "IDPO:00157"
+    },
+    {
+      "schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00158",
+      "value": "HNCACB",
+      "subjectScheme": "IDPO:00158"
+    },
+    {
+      "schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00160",
+      "value": "CBCACONH",
+      "subjectScheme": "IDPO:00160"
+    },
+    {
+      "schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00164",
+      "value": "CBCANH",
+      "subjectScheme": "IDPO:00164"
+    },
+    {
+      "schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00175",
+      "value": "NOE",
+      "subjectScheme": "IDPO:00175"
+    },
+    {
+      "schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00228",
+      "value": "AMBER",
+      "subjectScheme": "IDPO:00228"
+    },
+    {
+      "schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl:00190",
+      "value": "DYANA",
+      "subjectScheme": "IDPO:00190"
+    }
+  ]
+}
--- a/dhp-workflows/dhp-aggregation/src/test/scala/eu/dnetlib/dhp/bioschema/BioschemaDataciteToOAFTest.scala
+++ b/dhp-workflows/dhp-aggregation/src/test/scala/eu/dnetlib/dhp/bioschema/BioschemaDataciteToOAFTest.scala
@ -0,0 +1,115 @@
+package eu.dnetlib.dhp.bioschema
+
+import com.fasterxml.jackson.databind.{ObjectMapper, SerializationFeature}
+import eu.dnetlib.dhp.aggregation.AbstractVocabularyTest
+import eu.dnetlib.dhp.schema.oaf.Oaf
+import org.apache.commons.io.FileUtils
+import org.apache.spark.SparkConf
+import org.apache.spark.sql.{Encoder, Encoders, SparkSession}
+import org.junit.jupiter.api.Assertions._
+import org.junit.jupiter.api.extension.ExtendWith
+import org.junit.jupiter.api.{AfterEach, BeforeEach, Test}
+import org.mockito.junit.jupiter.MockitoExtension
+import org.slf4j.{Logger, LoggerFactory}
+
+import java.nio.file.{Files, Path}
+import scala.io.Source
+
+@ExtendWith(Array(classOf[MockitoExtension]))
+class BioschemaDataciteToOAFTest {
+
+  private var workingDir: Path = null
+  val log: Logger = LoggerFactory.getLogger(getClass)
+
+  @BeforeEach
+  def setUp(): Unit = {
+    workingDir = Files.createTempDirectory(getClass.getSimpleName)
+  }
+
+  @AfterEach
+  def tearDown(): Unit = {
+    FileUtils.deleteDirectory(workingDir.toFile)
+  }
+
+  @Test
+  def testGeneratePED(): Unit = {
+    val path = getClass.getResource("/eu/dnetlib/dhp/bioschema/ped_dump").getPath
+    val conf = new SparkConf()
+    val spark: SparkSession = SparkSession
+      .builder()
+      .config(conf)
+      .appName(getClass.getSimpleName)
+      .master("local[*]")
+      .getOrCreate()
+
+    implicit val oafEncoder: Encoder[Oaf] = Encoders.kryo[Oaf]
+    val instance = new GenerateBioschemaDatasetSpark(null, null, log)
+    val targetPath = s"$workingDir/result"
+
+    instance.generateBioschemaDataset(path, exportLinks = true, targetPath, "ped", "protein", spark)
+
+    val total_items = spark.read.text(targetPath).count()
+    println(s"total_items: $total_items")
+    assertTrue(total_items == 21)
+
+    instance.generateBioschemaDataset(path, exportLinks = false, targetPath, "ped", "protein", spark)
+
+    val total_datasets = spark.read.text(targetPath).count()
+    println(s"total_datasets: $total_datasets")
+    assertTrue(total_datasets == 5)
+
+    spark.stop()
+  }
+
+  @Test
+  def testPEDMapping(): Unit = {
+    val record = Source
+      .fromInputStream(getClass.getResourceAsStream("/eu/dnetlib/dhp/bioschema/ped_record.json"))
+      .mkString
+    val mapper = new ObjectMapper().enable(SerializationFeature.INDENT_OUTPUT)
+    val res: List[Oaf] = BioschemaToOAFTransformation.generateOAF(record, true, "ped", "protein")
+    res.foreach(r => {
+      println(mapper.writeValueAsString(r))
+      println("----------------------------")
+    })
+  }
+
+  @Test
+  def testDISPROTMapping(): Unit = {
+    val record = Source
+      .fromInputStream(getClass.getResourceAsStream("/eu/dnetlib/dhp/bioschema/disprot_record.json"))
+      .mkString
+    val mapper = new ObjectMapper().enable(SerializationFeature.INDENT_OUTPUT)
+    val res: List[Oaf] = BioschemaToOAFTransformation.generateOAF(record, true, "disprot", "protein")
+    res.foreach(r => {
+      println(mapper.writeValueAsString(r))
+      println("----------------------------")
+    })
+  }
+
+  @Test
+  def testMOBIDBMapping(): Unit = {
+    val record = Source
+      .fromInputStream(getClass.getResourceAsStream("/eu/dnetlib/dhp/bioschema/mobidb_record.json"))
+      .mkString
+    val mapper = new ObjectMapper().enable(SerializationFeature.INDENT_OUTPUT)
+    val res: List[Oaf] = BioschemaToOAFTransformation.generateOAF(record, true, "mobidb", "protein")
+    res.foreach(r => {
+      println(mapper.writeValueAsString(r))
+      println("----------------------------")
+    })
+  }
+
+  @Test
+  def testPEDDoiCitationMapping(): Unit = {
+    val record = Source
+      .fromInputStream(getClass.getResourceAsStream("/eu/dnetlib/dhp/bioschema/ped_doi_citation.json"))
+      .mkString
+    val mapper = new ObjectMapper().enable(SerializationFeature.INDENT_OUTPUT)
+    val res: List[Oaf] = BioschemaToOAFTransformation.generateOAF(record, true, "ped", "protein")
+    res.foreach(r => {
+      println(mapper.writeValueAsString(r))
+      println("----------------------------")
+    })
+  }
+}
--- a/dhp-workflows/dhp-rdfconverter/pom.xml
+++ b/dhp-workflows/dhp-rdfconverter/pom.xml
@ -0,0 +1,42 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+    <modelVersion>4.0.0</modelVersion>
+    <parent>
+        <groupId>eu.dnetlib.dhp</groupId>
+        <artifactId>dhp-workflows</artifactId>
+        <version>1.2.5-SNAPSHOT</version>
+    </parent>
+    <artifactId>dhp-rdfconverter</artifactId>
+
+    <dependencies>
+        <dependency>
+            <groupId>org.apache.spark</groupId>
+            <artifactId>spark-core_2.11</artifactId>
+        </dependency>
+        <dependency>
+            <groupId>org.apache.spark</groupId>
+            <artifactId>spark-sql_2.11</artifactId>
+        </dependency>
+        <dependency>
+            <groupId>eu.dnetlib.dhp</groupId>
+            <artifactId>dhp-common</artifactId>
+            <version>${project.version}</version>
+        </dependency>
+        <dependency>
+            <groupId>org.apache.any23</groupId>
+            <artifactId>apache-any23-core</artifactId>
+            <version>2.3</version>
+        </dependency>
+        <dependency>
+            <groupId>org.eclipse.rdf4j</groupId>
+            <artifactId>rdf4j-rio-rdfxml</artifactId>
+            <version>2.5.4</version>
+        </dependency>
+        <dependency>
+            <groupId>org.eclipse.rdf4j</groupId>
+            <artifactId>rdf4j-model</artifactId>
+            <version>2.5.4</version>
+        </dependency>
+    </dependencies>
+
+</project>
--- a/dhp-workflows/dhp-rdfconverter/src/main/java/eu/dnetlib/dhp/rdfconverter/bioschema/SparkRdfToDatacite.java
+++ b/dhp-workflows/dhp-rdfconverter/src/main/java/eu/dnetlib/dhp/rdfconverter/bioschema/SparkRdfToDatacite.java
@ -0,0 +1,82 @@
+
+package eu.dnetlib.dhp.rdfconverter.bioschema;
+
+import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
+
+import java.util.ArrayList;
+import java.util.Arrays;
+import java.util.Objects;
+import java.util.Optional;
+
+import org.apache.commons.io.IOUtils;
+import org.apache.hadoop.io.Text;
+import org.apache.hadoop.io.compress.GzipCodec;
+import org.apache.spark.SparkConf;
+import org.apache.spark.api.java.JavaPairRDD;
+import org.apache.spark.api.java.JavaRDD;
+import org.apache.spark.api.java.JavaSparkContext;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import eu.dnetlib.dhp.application.ArgumentApplicationParser;
+import eu.dnetlib.dhp.rdfconverter.utils.CompressorUtil;
+import eu.dnetlib.dhp.rdfconverter.utils.RDFConverter;
+import ucar.nc2.stream.NcStreamProto;
+
+public class SparkRdfToDatacite {
+
+	static Logger logger = LoggerFactory.getLogger(SparkRdfToDatacite.class);
+
+	public static void main(String[] args) throws Exception {
+
+		final ArgumentApplicationParser parser = new ArgumentApplicationParser(
+			IOUtils
+				.toString(
+					SparkRdfToDatacite.class
+						.getResourceAsStream(
+							"/eu/dnetlib/dhp/rdfconverter/bioschema/generate_dataset.json")));
+		parser.parseArgument(args);
+		Boolean isSparkSessionManaged = Optional
+			.ofNullable(parser.get("isSparkSessionManaged"))
+			.map(Boolean::valueOf)
+			.orElse(Boolean.TRUE);
+		final String workingPath = parser.get("workingPath");
+		final String rdfNquadsRecords = parser.get("rdfInput");
+		final String output = parser.get("output");
+		final String profile = parser.get("profile");
+
+		SparkConf conf = new SparkConf();
+		runWithSparkSession(
+			conf,
+			isSparkSessionManaged,
+			spark -> {
+				JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
+				String base64GzippedNquadsPath = workingPath.concat(rdfNquadsRecords);
+				JavaRDD<String> base64GzippedNquadsRDD = sc
+					.textFile(base64GzippedNquadsPath);
+				logger.info("Rdf nquads records retrieved: {}", base64GzippedNquadsRDD.count());
+
+				JavaRDD<String> proteins2 = base64GzippedNquadsRDD
+					.flatMap(nquads -> {
+						RDFConverter converter = new RDFConverter();
+						ArrayList<String> jsonlds = null;
+						try {
+							jsonlds = converter
+								.nQuadsFile2DataciteJson(CompressorUtil.decompressValue(nquads), profile);
+						} catch (Exception e) {
+							logger.error("converting: " + nquads, e);
+							return Arrays.asList(new String()).iterator();
+						}
+						return jsonlds.iterator();
+					});
+				logger.info("json datacite non filtered: {}", proteins2.count());
+				JavaRDD<Text> proteins = proteins2
+					.filter(Objects::nonNull)
+					.filter(jsonld -> !jsonld.isEmpty())
+					.distinct()
+					.map(jsonld -> new Text(jsonld));
+				logger.info("json datacite generated: {}", proteins.count());
+				proteins.saveAsTextFile(workingPath.concat(output), GzipCodec.class);
+			});
+	}
+}
--- a/dhp-workflows/dhp-rdfconverter/src/main/java/eu/dnetlib/dhp/rdfconverter/bioschema/model/BioSchemaProtein.java
+++ b/dhp-workflows/dhp-rdfconverter/src/main/java/eu/dnetlib/dhp/rdfconverter/bioschema/model/BioSchemaProtein.java
@ -0,0 +1,489 @@
+
+package eu.dnetlib.dhp.rdfconverter.bioschema.model;
+
+import java.util.List;
+
+import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
+import com.fasterxml.jackson.annotation.JsonProperty;
+import com.fasterxml.jackson.databind.annotation.JsonDeserialize;
+
+import eu.dnetlib.dhp.rdfconverter.utils.CustomPropertyValueDeserializer;
+
+@JsonIgnoreProperties(ignoreUnknown = true)
+public class BioSchemaProtein {
+	@JsonProperty("@id")
+	private String id;
+	@JsonProperty("@graph")
+	private List<Entry> entryList;
+	@JsonProperty("http://purl.org/pav/retrievedOn")
+	private DateTimeType retrievedOn;
+
+	public static class Entry {
+		@JsonProperty("@id")
+		private String id;
+		@JsonProperty("@type")
+//		private List<String> type;
+		private String type;
+		@JsonProperty("https://schema.org/identifier")
+		private String identifier;
+		@JsonProperty("https://schema.org/name")
+		private String name;
+		@JsonProperty("associatedDisease")
+		private List<AssociatedDisease> associatedDisease;
+		@JsonProperty("description")
+		private String description;
+		@JsonProperty("isEncodedByBioChemEntity")
+		private String isEncodedByBioChemEntity;
+		@JsonProperty("url")
+		private String url;
+		@JsonProperty("alternateName")
+		private String alternateName;
+		@JsonProperty("bioChemInteraction")
+		private List<Link> bioChemInteraction;
+		@JsonProperty("bioChemSimilarity")
+		private List<Link> bioChemSimilarity;
+		@JsonProperty("hasMolecularFunction")
+		private String hasMolecularFunction;
+		@JsonProperty("image")
+		private String image;
+		@JsonProperty("isInvolvedInBiologicalProcess")
+		private String isInvolvedInBiologicalProcess;
+		@JsonProperty("isPartOfBioChemEntity")
+		private IsPartOfBioChemEntity isPartOfBioChemEntity;
+		@JsonProperty("mainEntityOfPage")
+		private Link mainEntityOfPage;
+		@JsonProperty("https://schema.org/citation")
+		private Citation citation;
+		@JsonProperty("https://schema.org/sameAs")
+		private List<Link> sameAs;
+		@JsonProperty("https://schema.org/hasSequenceAnnotation")
+		private List<Link> hasSequenceAnnotation;
+		@JsonProperty("https://schema.org/additionalProperty")
+		private List<Link> sequenceAnnotation;
+		@JsonProperty("https://schema.org/value")
+		@JsonDeserialize(using = CustomPropertyValueDeserializer.class)
+		private Link propertyValue;
+		@JsonProperty("https://schema.org/termCode")
+		private String termCode;
+
+		public String getId() {
+			return id;
+		}
+
+		public void setId(String id) {
+			this.id = id;
+		}
+
+		public String getType() {
+			return type;
+		}
+
+		public void setType(String type) {
+			this.type = type;
+		}
+
+		public String getName() {
+			return name;
+		}
+
+		public void setName(String name) {
+			this.name = name;
+		}
+
+		public List<Link> getSameAs() {
+			return sameAs;
+		}
+
+		public void setSameAs(List<Link> sameAs) {
+			this.sameAs = sameAs;
+		}
+
+		public String getIdentifier() {
+			return identifier;
+		}
+
+		public void setIdentifier(String identifier) {
+			this.identifier = identifier;
+		}
+
+		public String getDescription() {
+			return description;
+		}
+
+		public void setDescription(String description) {
+			this.description = description;
+		}
+
+		public String getIsEncodedByBioChemEntity() {
+			return isEncodedByBioChemEntity;
+		}
+
+		public void setIsEncodedByBioChemEntity(String isEncodedByBioChemEntity) {
+			this.isEncodedByBioChemEntity = isEncodedByBioChemEntity;
+		}
+
+		public String getUrl() {
+			return url;
+		}
+
+		public void setUrl(String url) {
+			this.url = url;
+		}
+
+		public String getAlternateName() {
+			return alternateName;
+		}
+
+		public void setAlternateName(String alternateName) {
+			this.alternateName = alternateName;
+		}
+
+		public List<Link> getBioChemInteraction() {
+			return bioChemInteraction;
+		}
+
+		public void setBioChemInteraction(List<Link> bioChemInteraction) {
+			this.bioChemInteraction = bioChemInteraction;
+		}
+
+		public List<Link> getBioChemSimilarity() {
+			return bioChemSimilarity;
+		}
+
+		public void setBioChemSimilarity(List<Link> bioChemSimilarity) {
+			this.bioChemSimilarity = bioChemSimilarity;
+		}
+
+		public String getHasMolecularFunction() {
+			return hasMolecularFunction;
+		}
+
+		public void setHasMolecularFunction(String hasMolecularFunction) {
+			this.hasMolecularFunction = hasMolecularFunction;
+		}
+
+		public String getImage() {
+			return image;
+		}
+
+		public void setImage(String image) {
+			this.image = image;
+		}
+
+		public String getIsInvolvedInBiologicalProcess() {
+			return isInvolvedInBiologicalProcess;
+		}
+
+		public void setIsInvolvedInBiologicalProcess(String isInvolvedInBiologicalProcess) {
+			this.isInvolvedInBiologicalProcess = isInvolvedInBiologicalProcess;
+		}
+
+		public List<AssociatedDisease> getAssociatedDisease() {
+			return associatedDisease;
+		}
+
+		public void setAssociatedDisease(List<AssociatedDisease> associatedDisease) {
+			this.associatedDisease = associatedDisease;
+		}
+
+		public IsPartOfBioChemEntity getIsPartOfBioChemEntity() {
+			return isPartOfBioChemEntity;
+		}
+
+		public void setIsPartOfBioChemEntity(IsPartOfBioChemEntity isPartOfBioChemEntity) {
+			this.isPartOfBioChemEntity = isPartOfBioChemEntity;
+		}
+
+		public Link getMainEntityOfPage() {
+			return mainEntityOfPage;
+		}
+
+		public void setMainEntityOfPage(Link mainEntityOfPage) {
+			this.mainEntityOfPage = mainEntityOfPage;
+		}
+
+		public List<Link> getHasSequenceAnnotation() {
+			return hasSequenceAnnotation;
+		}
+
+		public void setHasSequenceAnnotation(List<Link> hasSequenceAnnotation) {
+			this.hasSequenceAnnotation = hasSequenceAnnotation;
+		}
+
+		public List<Link> getSequenceAnnotation() {
+			return sequenceAnnotation;
+		}
+
+		public void setSequenceAnnotation(List<Link> sequenceAnnotation) {
+			this.sequenceAnnotation = sequenceAnnotation;
+		}
+
+		public Citation getCitation() {
+			return citation;
+		}
+
+		public void setCitation(Citation citation) {
+			this.citation = citation;
+		}
+
+		public Link getPropertyValue() {
+			return propertyValue;
+		}
+
+		public void setPropertyValue(Link propertyValue) {
+			this.propertyValue = propertyValue;
+		}
+
+		public String getTermCode() {
+			return termCode;
+		}
+
+		public void setTermCode(String termCode) {
+			this.termCode = termCode;
+		}
+	}
+
+	public static class IsPartOfBioChemEntity {
+		@JsonProperty("@type")
+		private String type;
+		@JsonProperty("url")
+		private String url;
+
+		public String getType() {
+			return type;
+		}
+
+		public void setType(String type) {
+			this.type = type;
+		}
+
+		public String getUrl() {
+			return url;
+		}
+
+		public void setUrl(String url) {
+			this.url = url;
+		}
+	}
+
+	public static class AssociatedDisease {
+		@JsonProperty("@type")
+		private String type;
+		@JsonProperty("name")
+		private String name;
+		@JsonProperty("code")
+		private DeseaseCode code;
+		@JsonProperty("id")
+		private String id;
+
+		public String getType() {
+			return type;
+		}
+
+		public void setType(String type) {
+			this.type = type;
+		}
+
+		public String getName() {
+			return name;
+		}
+
+		public void setName(String name) {
+			this.name = name;
+		}
+
+		public DeseaseCode getCode() {
+			return code;
+		}
+
+		public void setCode(DeseaseCode code) {
+			this.code = code;
+		}
+
+		public String getId() {
+			return id;
+		}
+
+		public void setId(String id) {
+			this.id = id;
+		}
+	}
+
+	public static class DeseaseCode {
+		@JsonProperty("@type")
+		private String type;
+		@JsonProperty("codeValue")
+		private String codeValue;
+		@JsonProperty("codingSystem")
+		private String codingSystem;
+
+		public String getType() {
+			return type;
+		}
+
+		public void setType(String type) {
+			this.type = type;
+		}
+
+		public String getCodeValue() {
+			return codeValue;
+		}
+
+		public void setCodeValue(String codeValue) {
+			this.codeValue = codeValue;
+		}
+
+		public String getCodingSystem() {
+			return codingSystem;
+		}
+
+		public void setCodingSystem(String codingSystem) {
+			this.codingSystem = codingSystem;
+		}
+	}
+
+	public static class Link {
+		@JsonProperty("@id")
+		private String id;
+
+		public String getId() {
+			return id;
+		}
+
+		public void setId(String id) {
+			this.id = id;
+		}
+	}
+
+	public static class DateTimeType {
+		@JsonProperty("@type")
+		private String type;
+		@JsonProperty("@value")
+		private String value;
+
+		public String getType() {
+			return type;
+		}
+
+		public void setType(String type) {
+			this.type = type;
+		}
+
+		public String getValue() {
+			return value;
+		}
+
+		public void setValue(String value) {
+			this.value = value;
+		}
+	}
+
+	public static class Citation {
+		@JsonProperty("@id")
+		private String id;
+
+		public String getId() {
+			return id;
+		}
+
+		public void setId(String id) {
+			this.id = id;
+		}
+	}
+
+	public static class SequenceAnnotationId {
+		@JsonProperty("@id")
+		private String id;
+
+		public String getId() {
+			return id;
+		}
+
+		public void setId(String id) {
+			this.id = id;
+		}
+	}
+
+	public static class SequenceAnnotation {
+		@JsonProperty("https://schema.org/additionalProperty")
+		private List<PropertyValue> additionalProperty;
+
+		public List<PropertyValue> getAdditionalProperty() {
+			return additionalProperty;
+		}
+
+		public void setAdditionalProperty(List<PropertyValue> additionalProperty) {
+			this.additionalProperty = additionalProperty;
+		}
+	}
+
+	public static class PropertyValue {
+		@JsonProperty("https://schema.org/value")
+		private DefinedTerm definedTerm;
+
+		public DefinedTerm getDefinedTerm() {
+			return definedTerm;
+		}
+
+		public void setDefinedTerm(DefinedTerm definedTerm) {
+			this.definedTerm = definedTerm;
+		}
+	}
+
+	public static class DefinedTerm {
+		@JsonProperty("@id")
+		private String id;
+		@JsonProperty("https://schema.org/termCode")
+		private String termCode;
+		@JsonProperty("https://schema.org/name")
+		private String name;
+
+		public String getId() {
+			return id;
+		}
+
+		public void setId(String id) {
+			this.id = id;
+		}
+
+		public String getTermCode() {
+			return termCode;
+		}
+
+		public void setTermCode(String termCode) {
+			this.termCode = termCode;
+		}
+
+		public String getName() {
+			return name;
+		}
+
+		public void setName(String name) {
+			this.name = name;
+		}
+	}
+
+	public String getId() {
+		return id;
+	}
+
+	public void setId(String id) {
+		this.id = id;
+	}
+
+	public List<Entry> getEntryList() {
+		return entryList;
+	}
+
+	public void setEntryList(List<Entry> entryList) {
+		this.entryList = entryList;
+	}
+
+	public DateTimeType getRetrievedOn() {
+		return retrievedOn;
+	}
+
+	public void setRetrievedOn(DateTimeType retrievedOn) {
+		this.retrievedOn = retrievedOn;
+	}
+}
--- a/dhp-workflows/dhp-rdfconverter/src/main/java/eu/dnetlib/dhp/rdfconverter/bioschema/model/DataciteProtein.java
+++ b/dhp-workflows/dhp-rdfconverter/src/main/java/eu/dnetlib/dhp/rdfconverter/bioschema/model/DataciteProtein.java
@ -0,0 +1,331 @@
+
+package eu.dnetlib.dhp.rdfconverter.bioschema.model;
+
+import java.util.ArrayList;
+import java.util.List;
+
+import com.fasterxml.jackson.annotation.JsonInclude;
+
+@JsonInclude(JsonInclude.Include.NON_NULL)
+public class DataciteProtein {
+	private String id;
+	private String doi;
+	private Types types;
+	List<Creators> creators = new ArrayList<Creators>();
+	private String publisher;
+	private String publicationYear;
+	private static final String schemaVersion = "http://datacite.org/schema/kernel-4";
+	List<Identifier> identifiers = new ArrayList<Identifier>();
+	List<RelatedIdentifier> relatedIdentifiers = new ArrayList<RelatedIdentifier>();
+	List<AlternateIdentifier> alternateIdentifiers = new ArrayList<AlternateIdentifier>();
+	List<Description> descriptions = new ArrayList<Description>();
+	List<Title> titles = new ArrayList<Title>();
+	private List<DataciteDate> dates = new ArrayList<DataciteDate>();
+	private List<Subject> subjects = new ArrayList<Subject>();
+
+	@JsonInclude(JsonInclude.Include.NON_NULL)
+	public static class Types {
+		private String resourceType;
+		private String resourceTypeGeneral;
+
+		public String getResourceType() {
+			return resourceType;
+		}
+
+		public void setResourceType(String resourceType) {
+			this.resourceType = resourceType;
+		}
+
+		public String getResourceTypeGeneral() {
+			return resourceTypeGeneral;
+		}
+
+		public void setResourceTypeGeneral(String resourceTypeGeneral) {
+			this.resourceTypeGeneral = resourceTypeGeneral;
+		}
+	}
+
+	@JsonInclude(JsonInclude.Include.NON_NULL)
+	public static class Creators {
+	}
+
+	@JsonInclude(JsonInclude.Include.NON_NULL)
+	public static class Identifier {
+		private String identifier;
+		private String identifierType;
+
+		public String getIdentifier() {
+			return identifier;
+		}
+
+		public void setIdentifier(String identifier) {
+			this.identifier = identifier;
+		}
+
+		public String getIdentifierType() {
+			return identifierType;
+		}
+
+		public void setIdentifierType(String identifierType) {
+			this.identifierType = identifierType;
+		}
+	}
+
+	@JsonInclude(JsonInclude.Include.NON_NULL)
+	public static class RelatedIdentifier {
+		private String relationType;
+		private String relatedIdentifier;
+		private String relatedIdentifierType;
+
+		public String getRelationType() {
+			return relationType;
+		}
+
+		public void setRelationType(String relationType) {
+			this.relationType = relationType;
+		}
+
+		public String getRelatedIdentifier() {
+			return relatedIdentifier;
+		}
+
+		public void setRelatedIdentifier(String relatedIdentifier) {
+			this.relatedIdentifier = relatedIdentifier;
+		}
+
+		public String getRelatedIdentifierType() {
+			return relatedIdentifierType;
+		}
+
+		public void setRelatedIdentifierType(String relatedIdentifierType) {
+			this.relatedIdentifierType = relatedIdentifierType;
+		}
+	}
+
+	@JsonInclude(JsonInclude.Include.NON_NULL)
+	public static class AlternateIdentifier {
+		private String alternateIdentifier;
+		private String alternateIdentifierType;
+
+		public String getAlternateIdentifier() {
+			return alternateIdentifier;
+		}
+
+		public void setAlternateIdentifier(String alternateIdentifier) {
+			this.alternateIdentifier = alternateIdentifier;
+		}
+
+		public String getAlternateIdentifierType() {
+			return alternateIdentifierType;
+		}
+
+		public void setAlternateIdentifierType(String alternateIdentifierType) {
+			this.alternateIdentifierType = alternateIdentifierType;
+		}
+	}
+
+	@JsonInclude(JsonInclude.Include.NON_NULL)
+	public static class Description {
+		private String description;
+		private String descriptionType;
+
+		public String getDescription() {
+			return description;
+		}
+
+		public void setDescription(String description) {
+			this.description = description;
+		}
+
+		public String getDescriptionType() {
+			return descriptionType;
+		}
+
+		public void setDescriptionType(String descriptionType) {
+			this.descriptionType = descriptionType;
+		}
+	}
+
+	@JsonInclude(JsonInclude.Include.NON_NULL)
+	public static class Title {
+		private String title;
+		private String titleType;
+
+		public String getTitle() {
+			return title;
+		}
+
+		public void setTitle(String title) {
+			this.title = title;
+		}
+
+		public String getTitleType() {
+			return titleType;
+		}
+
+		public void setTitleType(String titleType) {
+			this.titleType = titleType;
+		}
+	}
+
+	@JsonInclude(JsonInclude.Include.NON_NULL)
+	public static class DataciteDate {
+		private String date;
+		private String dateType;
+
+		public String getDate() {
+			return date;
+		}
+
+		public void setDate(String date) {
+			this.date = date;
+		}
+
+		public String getDateType() {
+			return dateType;
+		}
+
+		public void setDateType(String dateType) {
+			this.dateType = dateType;
+		}
+	}
+
+	@JsonInclude(JsonInclude.Include.NON_NULL)
+	public static class Subject {
+		private String schemeURI;
+		private String value;
+		private String subjectScheme;
+
+		public String getSchemeURI() {
+			return schemeURI;
+		}
+
+		public void setSchemeURI(String schemeURI) {
+			this.schemeURI = schemeURI;
+		}
+
+		public String getValue() {
+			return value;
+		}
+
+		public void setValue(String value) {
+			this.value = value;
+		}
+
+		public String getSubjectScheme() {
+			return subjectScheme;
+		}
+
+		public void setSubjectScheme(String subjectScheme) {
+			this.subjectScheme = subjectScheme;
+		}
+	}
+
+	public String getId() {
+		return id;
+	}
+
+	public void setId(String id) {
+		this.id = id;
+	}
+
+	public String getDoi() {
+		return doi;
+	}
+
+	public void setDoi(String doi) {
+		this.doi = doi;
+	}
+
+	public Types getTypes() {
+		return types;
+	}
+
+	public void setTypes(Types types) {
+		this.types = types;
+	}
+
+	public List<Creators> getCreators() {
+		return creators;
+	}
+
+	public void setCreators(List<Creators> creators) {
+		this.creators = creators;
+	}
+
+	public String getPublisher() {
+		return publisher;
+	}
+
+	public void setPublisher(String publisher) {
+		this.publisher = publisher;
+	}
+
+	public String getPublicationYear() {
+		return publicationYear;
+	}
+
+	public void setPublicationYear(String publicationYear) {
+		this.publicationYear = publicationYear;
+	}
+
+	public static String getSchemaVersion() {
+		return schemaVersion;
+	}
+
+	public List<RelatedIdentifier> getRelatedIdentifiers() {
+		return relatedIdentifiers;
+	}
+
+	public void setRelatedIdentifiers(List<RelatedIdentifier> relatedIdentifiers) {
+		this.relatedIdentifiers = relatedIdentifiers;
+	}
+
+	public List<AlternateIdentifier> getAlternateIdentifiers() {
+		return alternateIdentifiers;
+	}
+
+	public void setAlternateIdentifiers(List<AlternateIdentifier> alternateIdentifiers) {
+		this.alternateIdentifiers = alternateIdentifiers;
+	}
+
+	public List<Description> getDescriptions() {
+		return descriptions;
+	}
+
+	public void setDescriptions(List<Description> descriptions) {
+		this.descriptions = descriptions;
+	}
+
+	public List<Title> getTitles() {
+		return titles;
+	}
+
+	public void setTitles(List<Title> titles) {
+		this.titles = titles;
+	}
+
+	public List<Identifier> getIdentifiers() {
+		return identifiers;
+	}
+
+	public void setIdentifiers(List<Identifier> identifiers) {
+		this.identifiers = identifiers;
+	}
+
+	public List<DataciteDate> getDates() {
+		return dates;
+	}
+
+	public void setDates(List<DataciteDate> dates) {
+		this.dates = dates;
+	}
+
+	public List<Subject> getSubjects() {
+		return subjects;
+	}
+
+	public void setSubjects(List<Subject> subjects) {
+		this.subjects = subjects;
+	}
+}
--- a/dhp-workflows/dhp-rdfconverter/src/main/java/eu/dnetlib/dhp/rdfconverter/utils/CompressorUtil.java
+++ b/dhp-workflows/dhp-rdfconverter/src/main/java/eu/dnetlib/dhp/rdfconverter/utils/CompressorUtil.java
@ -0,0 +1,35 @@
+
+package eu.dnetlib.dhp.rdfconverter.utils;
+
+import java.io.ByteArrayInputStream;
+import java.io.ByteArrayOutputStream;
+import java.io.IOException;
+import java.io.StringWriter;
+import java.util.zip.GZIPInputStream;
+import java.util.zip.GZIPOutputStream;
+
+import org.apache.commons.codec.binary.Base64;
+import org.apache.commons.io.IOUtils;
+
+public class CompressorUtil {
+
+	public static String decompressValue(final String abstractCompressed) {
+		try {
+			byte[] byteArray = Base64.decodeBase64(abstractCompressed.getBytes());
+			GZIPInputStream gis = new GZIPInputStream(new ByteArrayInputStream(byteArray));
+			final StringWriter stringWriter = new StringWriter();
+			IOUtils.copy(gis, stringWriter);
+			return stringWriter.toString();
+		} catch (IOException e) {
+			throw new IllegalArgumentException(e);
+		}
+	}
+
+	public static String compressValue(final String value) throws IOException {
+		ByteArrayOutputStream out = new ByteArrayOutputStream();
+		GZIPOutputStream gzip = new GZIPOutputStream(out);
+		gzip.write(value.getBytes());
+		gzip.close();
+		return java.util.Base64.getEncoder().encodeToString(out.toByteArray());
+	}
+}
--- a/dhp-workflows/dhp-rdfconverter/src/main/java/eu/dnetlib/dhp/rdfconverter/utils/CustomPropertyValueDeserializer.java
+++ b/dhp-workflows/dhp-rdfconverter/src/main/java/eu/dnetlib/dhp/rdfconverter/utils/CustomPropertyValueDeserializer.java
@ -0,0 +1,43 @@
+
+package eu.dnetlib.dhp.rdfconverter.utils;
+
+import java.io.IOException;
+
+import com.fasterxml.jackson.core.JsonParser;
+import com.fasterxml.jackson.core.ObjectCodec;
+import com.fasterxml.jackson.databind.DeserializationContext;
+import com.fasterxml.jackson.databind.JsonNode;
+import com.fasterxml.jackson.databind.deser.std.StdDeserializer;
+
+import eu.dnetlib.dhp.rdfconverter.bioschema.model.BioSchemaProtein;
+
+public class CustomPropertyValueDeserializer
+	extends StdDeserializer<BioSchemaProtein.Link> {
+
+	public CustomPropertyValueDeserializer() {
+		this(null);
+	}
+
+	public CustomPropertyValueDeserializer(Class<?> vc) {
+		super(vc);
+	}
+
+	@Override
+	public BioSchemaProtein.Link deserialize(
+		JsonParser jsonparser, DeserializationContext context)
+		throws IOException {
+		ObjectCodec oc = jsonparser.getCodec();
+		JsonNode node = oc.readTree(jsonparser);
+		JsonNode id = node.get("@id");
+		if (id != null) {
+			BioSchemaProtein.Link link = new BioSchemaProtein.Link();
+			link.setId(id.asText());
+			return link;
+		} else {
+			String txt = node.asText();
+			BioSchemaProtein.Link link = new BioSchemaProtein.Link();
+			link.setId(txt);
+			return link;
+		}
+	}
+}
--- a/dhp-workflows/dhp-rdfconverter/src/main/java/eu/dnetlib/dhp/rdfconverter/utils/RDFConverter.java
+++ b/dhp-workflows/dhp-rdfconverter/src/main/java/eu/dnetlib/dhp/rdfconverter/utils/RDFConverter.java
@ -0,0 +1,309 @@
+
+package eu.dnetlib.dhp.rdfconverter.utils;
+
+import java.io.IOException;
+import java.io.StringReader;
+import java.io.StringWriter;
+import java.util.*;
+import java.util.stream.Collectors;
+
+import org.eclipse.rdf4j.model.Model;
+import org.eclipse.rdf4j.rio.RDFFormat;
+import org.eclipse.rdf4j.rio.RDFWriter;
+import org.eclipse.rdf4j.rio.Rio;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import com.fasterxml.jackson.databind.DeserializationFeature;
+import com.fasterxml.jackson.databind.ObjectMapper;
+import com.fasterxml.jackson.databind.module.SimpleModule;
+import com.github.jsonldjava.core.JsonLdOptions;
+import com.github.jsonldjava.core.JsonLdProcessor;
+import com.github.jsonldjava.utils.JsonUtils;
+
+import eu.dnetlib.dhp.rdfconverter.bioschema.model.BioSchemaProtein;
+import eu.dnetlib.dhp.rdfconverter.bioschema.model.DataciteProtein;
+
+public class RDFConverter {
+
+	private static final Logger log = LoggerFactory.getLogger(RDFConverter.class);
+
+	public ArrayList<String> nQuadsFile2DataciteJson(String nquads, String profile) throws Exception {
+		if (profile.equals("Protein")) {
+			return nQuadsFile2DataciteJson(nquads);
+		}
+		throw new RuntimeException("Profile not supported");
+	}
+
+	private ArrayList<String> nQuadsFile2DataciteJson(String nquads) throws Exception {
+		StringReader reader = new StringReader(nquads);
+		Model model = Rio.parse(reader, "", RDFFormat.NQUADS);
+		StringWriter jsonLDWriter = new StringWriter();
+		RDFWriter rdfRecordWriter = Rio.createWriter(RDFFormat.JSONLD, jsonLDWriter);
+		Rio.write(model, rdfRecordWriter);
+		String jsonLDBuffer = jsonLDWriter.toString();
+		Object jsonObject = JsonUtils.fromString(jsonLDBuffer);
+		Object compact = JsonLdProcessor.compact(jsonObject, new HashMap<>(), new JsonLdOptions());
+		String compactContent = JsonUtils.toString(compact);
+		log.debug("jsonld: " + compactContent);
+
+		ObjectMapper objectMapper = new ObjectMapper();
+		objectMapper.enable(DeserializationFeature.ACCEPT_SINGLE_VALUE_AS_ARRAY);
+		objectMapper.enable(DeserializationFeature.ACCEPT_EMPTY_STRING_AS_NULL_OBJECT);
+		objectMapper.configure(DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES, false);
+		objectMapper.configure(DeserializationFeature.FAIL_ON_INVALID_SUBTYPE, false);
+		objectMapper.configure(DeserializationFeature.FAIL_ON_MISSING_CREATOR_PROPERTIES, false);
+		BioSchemaProtein bioSchemaProtein = objectMapper.readValue(compactContent, BioSchemaProtein.class);
+		BioSchemaProtein.DateTimeType retrievedOnType = bioSchemaProtein.getRetrievedOn();
+
+		List<String> citations = bioSchemaProtein.getEntryList().stream().map(entry -> {
+			if (entry.getCitation() != null) {
+				BioSchemaProtein.Citation citationInfo = entry.getCitation();
+				return citationInfo.getId();
+			}
+			return null;
+		}).filter(id -> id != null).collect(Collectors.toList());
+
+		ArrayList<String> results = new ArrayList<String>();
+		final List<DataciteProtein> dataciteProteins = new ArrayList<>();
+		final Map<String, List<BioSchemaProtein.Link>> sequenceAnnotations = new HashMap<>();
+		final Map<String, String> propertyValues = new HashMap<>();
+		final Map<String, BioSchemaProtein.DefinedTerm> definedTerms = new HashMap<>();
+		final Map<String, BioSchemaProtein.Entry> bioschemaProteins = new HashMap<>();
+		final List<String> mainTitles = new ArrayList<>();
+
+		bioSchemaProtein.getEntryList().stream().forEach(entry -> {
+
+			if (entry.getType() != null
+				&& entry
+					.getType()
+					.equals("https://schema.org/Protein")) {
+
+				DataciteProtein dataciteProtein = new DataciteProtein();
+
+				citations.forEach(citation -> {
+					addRelatedIdentifier(dataciteProtein, citation, "IsCitedBy");
+				});
+
+				DataciteProtein.Types types = new DataciteProtein.Types();
+				types.setResourceType("Protein");
+				types.setResourceTypeGeneral("Dataset");
+				dataciteProtein.setTypes(types);
+
+				DataciteProtein.DataciteDate dataciteDate = new DataciteProtein.DataciteDate();
+				dataciteDate.setDate(retrievedOnType.getValue());
+				dataciteDate.setDateType("Collected");
+				dataciteProtein.getDates().add(dataciteDate);
+
+				DataciteProtein.Identifier identifier = new DataciteProtein.Identifier();
+				identifier.setIdentifier(entry.getId());
+				identifier.setIdentifierType("URL");
+				dataciteProtein.getIdentifiers().add(identifier);
+
+				if (entry.getIdentifier() != null) {
+					addAlternateIdentifier(dataciteProtein, entry.getIdentifier());
+				}
+
+				if (entry.getDescription() != null) {
+					DataciteProtein.Description description = new DataciteProtein.Description();
+					description.setDescription(entry.getDescription());
+					dataciteProtein.getDescriptions().add(description);
+				}
+
+				if (entry.getIsEncodedByBioChemEntity() != null) {
+					addRelatedIdentifier(dataciteProtein, entry.getIsEncodedByBioChemEntity(), "");
+				}
+
+				if (entry.getUrl() != null) {
+					addAlternateIdentifier(dataciteProtein, entry.getUrl());
+				}
+
+				if (entry.getAlternateName() != null) {
+					DataciteProtein.Title title = new DataciteProtein.Title();
+					title.setTitle(entry.getAlternateName());
+					title.setTitleType("AlternativeTitle");
+					dataciteProtein.getTitles().add(title);
+				}
+
+				if (entry.getBioChemInteraction() != null) {
+					entry.getBioChemInteraction().stream().filter(Objects::nonNull).forEach(bc -> {
+						addRelatedIdentifier(dataciteProtein, bc.getId(), "");
+					});
+				}
+
+				if (entry.getBioChemSimilarity() != null) {
+					entry.getBioChemSimilarity().stream().filter(Objects::nonNull).forEach(bc -> {
+						addRelatedIdentifier(dataciteProtein, bc.getId(), "");
+					});
+				}
+
+				if (entry.getHasMolecularFunction() != null) {
+					addRelatedIdentifier(dataciteProtein, entry.getHasMolecularFunction(), "");
+				}
+
+				if (entry.getIsInvolvedInBiologicalProcess() != null) {
+					addRelatedIdentifier(dataciteProtein, entry.getIsInvolvedInBiologicalProcess(), "");
+				}
+
+				if (entry.getIsEncodedByBioChemEntity() != null) {
+					addRelatedIdentifier(dataciteProtein, entry.getIsEncodedByBioChemEntity(), "");
+				}
+
+				if (entry.getIsPartOfBioChemEntity() != null) {
+					addRelatedIdentifier(dataciteProtein, entry.getIsPartOfBioChemEntity().getUrl(), "");
+				}
+
+				if (entry.getSameAs() != null) {
+					entry.getSameAs().stream().filter(Objects::nonNull).forEach(sameAs -> {
+						addRelatedIdentifier(dataciteProtein, sameAs.getId(), "IsIdenticalTo");
+					});
+				}
+
+				if (entry.getAssociatedDisease() != null) {
+					entry.getAssociatedDisease().stream().filter(Objects::nonNull).forEach(ad -> {
+						addRelatedIdentifier(dataciteProtein, ad.getName(), "IsIdenticalTo");
+					});
+				}
+
+				String proteinId = "";
+				try {
+					String[] identifierParts = dataciteProtein.getIdentifiers().get(0).getIdentifier().split("/");
+					proteinId = identifierParts[identifierParts.length - 1];
+				} catch (Exception e) {
+					log.error("Identifier not found", e.getMessage());
+				}
+
+				mainTitles.add(" " + entry.getName() + " ");
+
+				dataciteProtein.setId(proteinId);
+				bioschemaProteins.put(entry.getId(), entry);
+				dataciteProteins.add(dataciteProtein);
+			}
+			if (entry.getType() != null
+				&& entry
+					.getType()
+					.equals("https://schema.org/SequenceAnnotation")) {
+				sequenceAnnotations.put(entry.getId(), entry.getSequenceAnnotation());
+			}
+			if (entry.getType() != null
+				&& entry
+					.getType()
+					.equals("https://schema.org/PropertyValue")) {
+				propertyValues.put(entry.getId(), entry.getPropertyValue().getId());
+			}
+			if (entry.getType() != null
+				&& entry
+					.getType()
+					.equals("https://schema.org/DefinedTerm")) {
+				BioSchemaProtein.DefinedTerm term = new BioSchemaProtein.DefinedTerm();
+				term.setId(entry.getId());
+				term.setTermCode(entry.getTermCode());
+				term.setName(entry.getName());
+				definedTerms.put(term.getId(), term);
+			}
+			if (entry.getType() != null
+				&& entry
+					.getType()
+					.equals("https://schema.org/CollectionPage")) {
+				mainTitles.add(entry.getName());
+			}
+		});
+		bioschemaProteins
+			.entrySet()
+			.stream()
+			.filter(bioProtein -> Objects.nonNull(bioProtein.getValue().getHasSequenceAnnotation()))
+			.forEach(bioProtein -> {
+				List<String> seqAnnIds = bioProtein
+					.getValue()
+					.getHasSequenceAnnotation()
+					.stream()
+					.map(s -> s.getId())
+					.collect(Collectors.toList());
+				List<BioSchemaProtein.Link> propertyIds = sequenceAnnotations
+					.entrySet()
+					.stream()
+					.filter(s -> seqAnnIds.contains(s.getKey()))
+					.flatMap(s -> {
+						return s.getValue().stream();
+					})
+					.collect(Collectors.toList());
+
+				propertyIds
+					.stream()
+					.map(propertyId -> propertyValues.get(propertyId.getId()))
+					.filter(term -> Objects.nonNull(term))
+					.map(term -> definedTerms.get(term))
+					.filter(term -> Objects.nonNull(term))
+					.forEach(term -> {
+						dataciteProteins
+							.stream()
+							.filter(
+								dcProtein -> dcProtein
+									.getIdentifiers()
+									.get(0)
+									.getIdentifier()
+									.equals(bioProtein.getKey()))
+							.filter(dcProtein -> Objects.nonNull(dcProtein))
+							.forEach(d -> {
+								DataciteProtein.Subject subject = new DataciteProtein.Subject();
+								subject.setSchemeURI(term.getId());
+								subject.setValue(term.getName());
+								subject.setSubjectScheme(term.getTermCode());
+								d.getSubjects().add(subject);
+							});
+					});
+			});
+
+		dataciteProteins
+			.stream()
+			.filter(d -> (d.getSubjects() != null && !d.getSubjects().isEmpty()))
+			.forEach(d -> {
+				Map<String, DataciteProtein.Subject> cleanedSubjects = new HashMap<>();
+				d.getSubjects().stream().forEach(s -> {
+					cleanedSubjects.putIfAbsent(s.getValue(), s);
+				});
+				d.getSubjects().clear();
+				d.setSubjects(cleanedSubjects.values().stream().collect(Collectors.toList()));
+			});
+
+		dataciteProteins.forEach(d -> {
+			DataciteProtein.Title title = new DataciteProtein.Title();
+			title.setTitle(d.getId() + " - ".concat(mainTitles.get(0)));
+			d.getTitles().add(title);
+		});
+
+		ObjectMapper mapper = new ObjectMapper();
+		dataciteProteins.forEach(d -> {
+			StringWriter writer = new StringWriter();
+			try {
+				mapper.writeValue(writer, d);
+			} catch (IOException e) {
+				throw new RuntimeException(e);
+			}
+			results.add(writer.toString());
+		});
+		if (dataciteProteins.isEmpty()) {
+			log.error("No Protein data found: " + nquads);
+		}
+		return results;
+	}
+
+	private void addRelatedIdentifier(DataciteProtein DataciteProtein, String relatedIdentifierValue,
+		String relationType) {
+		DataciteProtein.RelatedIdentifier relatedIdentifier = new DataciteProtein.RelatedIdentifier();
+		relatedIdentifier.setRelatedIdentifier(relatedIdentifierValue);
+		if (!relationType.isEmpty()) {
+			relatedIdentifier.setRelationType(relationType);
+		}
+		if (relatedIdentifierValue.contains("http://") || relatedIdentifierValue.contains("https://")) {
+			relatedIdentifier.setRelatedIdentifierType("URL");
+		}
+		DataciteProtein.getRelatedIdentifiers().add(relatedIdentifier);
+	}
+
+	private void addAlternateIdentifier(DataciteProtein DataciteProtein, String alternateIdentifierValue) {
+		DataciteProtein.AlternateIdentifier alternateIdentifier = new DataciteProtein.AlternateIdentifier();
+		alternateIdentifier.setAlternateIdentifier(alternateIdentifierValue);
+		DataciteProtein.getAlternateIdentifiers().add(alternateIdentifier);
+	}
+}
--- a/dhp-workflows/dhp-rdfconverter/src/main/resources/eu/dnetlib/dhp/rdfconverter/bioschema/generate_dataset.json
+++ b/dhp-workflows/dhp-rdfconverter/src/main/resources/eu/dnetlib/dhp/rdfconverter/bioschema/generate_dataset.json
@ -0,0 +1,32 @@
+[
+  {
+    "paramName": "n",
+    "paramLongName": "nameNode",
+    "paramDescription": "the Name Node URI",
+    "paramRequired": true
+  },
+  {
+    "paramName": "w",
+    "paramLongName": "workingPath",
+    "paramDescription": "the working path",
+    "paramRequired": true
+  },
+  {
+    "paramName": "i",
+    "paramLongName": "rdfInput",
+    "paramDescription": "sequence file inside working path that contains rdf records",
+    "paramRequired": true
+  },
+  {
+    "paramName": "o",
+    "paramLongName": "output",
+    "paramDescription": "relative path inside workingpath where bioschema dataset in datacite format will be stored",
+    "paramRequired": true
+  },
+  {
+    "paramName": "p",
+    "paramLongName": "profile",
+    "paramDescription": "the input data profile that has to be used for conversion (https://bioschemas.org/profiles/)",
+    "paramRequired": true
+  }
+]
--- a/dhp-workflows/dhp-rdfconverter/src/main/resources/eu/dnetlib/dhp/rdfconverter/bioschema/oozie_app/config-default.xml
+++ b/dhp-workflows/dhp-rdfconverter/src/main/resources/eu/dnetlib/dhp/rdfconverter/bioschema/oozie_app/config-default.xml
@ -0,0 +1,65 @@
+<configuration>
+
+    <!-- OCEAN  -->
+
+<!--    <property>-->
+<!--        <name>jobTracker</name>-->
+<!--        <value>yarnRM</value>-->
+<!--    </property>-->
+<!--    <property>-->
+<!--        <name>nameNode</name>-->
+<!--        <value>hdfs://nameservice1</value>-->
+<!--    </property>-->
+<!--    <property>-->
+<!--        <name>hive_metastore_uris</name>-->
+<!--        <value>thrift://iis-cdh5-test-m3.ocean.icm.edu.pl:9083</value>-->
+<!--    </property>-->
+<!--    <property>-->
+<!--        <name>spark2YarnHistoryServerAddress</name>-->
+<!--        <value>http://iis-cdh5-test-gw.ocean.icm.edu.pl:18089</value>-->
+<!--    </property>-->
+
+
+    <!-- GARR  -->
+
+    <property>
+        <name>jobTracker</name>
+        <value>hadoop-rm3.garr-pa1.d4science.org:8032</value>
+    </property>
+    <property>
+        <name>nameNode</name>
+        <value>hdfs://hadoop-rm1.garr-pa1.d4science.org:8020</value>
+    </property>
+    <property>
+        <name>hive_metastore_uris</name>
+        <value>thrift://hadoop-edge3.garr-pa1.d4science.org:9083</value>
+    </property>
+    <property>
+        <name>spark2YarnHistoryServerAddress</name>
+        <value>http://hadoop-rm2.garr-pa1.d4science.org:19888</value>
+    </property>
+    <property>
+        <name>oozie.launcher.mapreduce.user.classpath.first</name>
+        <value>true</value>
+    </property>
+    <property>
+        <name>oozie.use.system.libpath</name>
+        <value>true</value>
+    </property>
+    <property>
+        <name>oozie.action.sharelib.for.spark</name>
+        <value>spark2</value>
+    </property>
+    <property>
+        <name>spark2EventLogDir</name>
+        <value>/user/spark/spark2ApplicationHistory</value>
+    </property>
+    <property>
+        <name>spark2ExtraListeners</name>
+        <value>"com.cloudera.spark.lineage.NavigatorAppListener"</value>
+    </property>
+    <property>
+        <name>spark2SqlQueryExecutionListeners</name>
+        <value>"com.cloudera.spark.lineage.NavigatorQueryListener"</value>
+    </property>
+</configuration>
--- a/dhp-workflows/dhp-rdfconverter/src/main/resources/eu/dnetlib/dhp/rdfconverter/bioschema/oozie_app/download_nquads.sh
+++ b/dhp-workflows/dhp-rdfconverter/src/main/resources/eu/dnetlib/dhp/rdfconverter/bioschema/oozie_app/download_nquads.sh
@ -0,0 +1,3 @@
+wget -O /tmp/base64_gzipped_nquads.txt https://hadoop-bioschemas-ds.garr-pa1.d4science.org/bioschemas-api/api/getNQuads?datasourceKey=$1
+hdfs dfs -copyFromLocal /tmp/base64_gzipped_nquads.txt /data/bioschema/mobidb
+rm -f /tmp/base64_gzipped_nquads.txt
--- a/dhp-workflows/dhp-rdfconverter/src/main/resources/eu/dnetlib/dhp/rdfconverter/bioschema/oozie_app/workflow.xml
+++ b/dhp-workflows/dhp-rdfconverter/src/main/resources/eu/dnetlib/dhp/rdfconverter/bioschema/oozie_app/workflow.xml
@ -0,0 +1,118 @@
+<workflow-app name="RdfConverter" xmlns="uri:oozie:workflow:0.5">
+    <parameters>
+        <property>
+            <name>bioschemas_datasource_key</name>
+            <value>mobidb</value>
+            <description>bioschemas datasource key (i.e. mobidb, ped, disprot)</description>
+        </property>
+        <property>
+            <name>workingPath</name>
+            <value>/data/bioschema/mobidb/</value>
+            <description>the working path</description>
+        </property>
+        <property>
+            <name>rdfInput</name>
+            <value>base64_gzipped_nquads.txt</value>
+            <description>rdf output of scraping workflow</description>
+        </property>
+        <property>
+            <name>output</name>
+            <value>json-datacite/</value>
+        </property>
+        <property>
+            <name>profile</name>
+            <value>Protein</value>
+            <description>the input data profile that has to be used for conversion (https://bioschemas.org/profiles/)</description>
+        </property>
+        <property>
+            <name>oozie.launcher.mapreduce.map.java.opts</name>
+            <value>-Xmx4g</value>
+        </property>
+        <property>
+            <name>spark2RdfConversionMaxExecutors</name>
+            <value>50</value>
+        </property>
+        <property>
+            <name>sparkDriverMemory</name>
+            <value>7G</value>
+            <description>memory for driver process</description>
+        </property>
+        <property>
+            <name>sparkExecutorMemory</name>
+            <value>2G</value>
+            <description>memory for individual executor</description>
+        </property>
+        <property>
+            <name>sparkExecutorCores</name>
+            <value>4</value>
+            <description>number of cores used by single executor</description>
+        </property>
+        <property>
+            <name>spark2ExtraListeners</name>
+            <value>com.cloudera.spark.lineage.NavigatorAppListener</value>
+            <description>spark 2.* extra listeners classname</description>
+        </property>
+        <property>
+            <name>spark2YarnHistoryServerAddress</name>
+            <description>spark 2.* yarn history server address</description>
+        </property>
+        <property>
+            <name>spark2EventLogDir</name>
+            <description>spark 2.* event log dir location</description>
+        </property>
+    </parameters>
+
+    <start to="DownloadNQuads"/>
+    <kill name="Kill">
+        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
+    </kill>
+
+    <action name="DownloadNQuads">
+        <shell xmlns="uri:oozie:shell-action:0.1">
+            <job-tracker>${jobTracker}</job-tracker>
+            <name-node>${nameNode}</name-node>
+            <exec>download_nquads.sh</exec>
+            <argument>${bioschemas_datasource_key}</argument>
+            <file>download_nquads.sh</file>
+            <capture-output/>
+        </shell>
+        <ok to="ResetWorkingPath"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="ResetWorkingPath">
+        <fs>
+            <delete path='${workingPath}${output}'/>
+        </fs>
+        <ok to="NquadsToDataciteJson"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="NquadsToDataciteJson">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn-cluster</master>
+            <mode>cluster</mode>
+            <name>NquadsToDataciteJson</name>
+            <class>eu.dnetlib.dhp.rdfconverter.bioschema.SparkRdfToDatacite</class>
+            <jar>dhp-rdfconverter-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --executor-memory=${sparkExecutorMemory}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+            </spark-opts>
+            <arg>--nameNode</arg><arg>${nameNode}</arg>
+            <arg>--workingPath</arg><arg>${workingPath}</arg>
+            <arg>--rdfInput</arg><arg>${rdfInput}</arg>
+            <arg>--output</arg><arg>${output}</arg>
+            <arg>--profile</arg><arg>${profile}</arg>
+        </spark>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
+
+    <end name="End"/>
+</workflow-app>
--- a/dhp-workflows/dhp-rdfconverter/src/main/resources/log4j.properties
+++ b/dhp-workflows/dhp-rdfconverter/src/main/resources/log4j.properties
@ -0,0 +1,9 @@
+# Set root logger level to DEBUG and its only appender to A1.
+log4j.rootLogger=INFO, A1
+
+# A1 is set to be a ConsoleAppender.
+log4j.appender.A1=org.apache.log4j.ConsoleAppender
+
+# A1 uses PatternLayout.
+log4j.appender.A1.layout=org.apache.log4j.PatternLayout
+log4j.appender.A1.layout.ConversionPattern=%-4r [%t] %-5p %c %x - %m%n
--- a/dhp-workflows/dhp-rdfconverter/src/test/java/eu/dnetlib/dhp/rdfconverter/bioschema/ConverterTest.java
+++ b/dhp-workflows/dhp-rdfconverter/src/test/java/eu/dnetlib/dhp/rdfconverter/bioschema/ConverterTest.java
@ -0,0 +1,64 @@
+
+package eu.dnetlib.dhp.rdfconverter.bioschema;
+
+import java.io.InputStream;
+import java.util.ArrayList;
+
+import org.apache.commons.io.IOUtils;
+import org.junit.jupiter.api.Test;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import eu.dnetlib.dhp.rdfconverter.utils.CompressorUtil;
+import eu.dnetlib.dhp.rdfconverter.utils.RDFConverter;
+
+public class ConverterTest {
+
+	static Logger logger = LoggerFactory.getLogger(ConverterTest.class);
+
+	@Test
+	public void disprotToDataciteTest() throws Exception {
+		InputStream is = ConverterTest.class.getResourceAsStream("/eu/dnetlib/dhp/rdfconverter/bioschema/disprot.nq");
+		String nq = IOUtils.toString(is);
+		RDFConverter converter = new RDFConverter();
+		ArrayList<String> results = converter.nQuadsFile2DataciteJson(nq, "Protein");
+		results.stream().forEach(r -> {
+			logger.info("JSON DATACITE >> " + r);
+		});
+	}
+
+	@Test
+	public void pedCitationTest() throws Exception {
+		InputStream is = ConverterTest.class.getResourceAsStream("/eu/dnetlib/dhp/rdfconverter/bioschema/ped.nq");
+		String nq = IOUtils.toString(is);
+		RDFConverter converter = new RDFConverter();
+		ArrayList<String> results = converter.nQuadsFile2DataciteJson(nq, "Protein");
+		results.stream().forEach(r -> {
+			logger.info("JSON DATACITE >> " + r);
+		});
+	}
+
+	@Test
+	public void mobidbToDataciteTest() throws Exception {
+		InputStream is = ConverterTest.class.getResourceAsStream("/eu/dnetlib/dhp/rdfconverter/bioschema/mobidb.nq");
+		String nq = IOUtils.toString(is);
+		RDFConverter converter = new RDFConverter();
+		ArrayList<String> results = converter.nQuadsFile2DataciteJson(nq, "Protein");
+		results.stream().forEach(r -> {
+			logger.info("JSON DATACITE >> " + r);
+		});
+	}
+
+	@Test
+	public void decompressTest() throws Exception {
+		InputStream is = ConverterTest.class
+			.getResourceAsStream("/eu/dnetlib/dhp/rdfconverter/bioschema/base64_gzipped_nquads.txt");
+		String base64_gzipped_nquads = IOUtils.toString(is);
+		String nq = CompressorUtil.decompressValue(base64_gzipped_nquads);
+		RDFConverter converter = new RDFConverter();
+		ArrayList<String> results = converter.nQuadsFile2DataciteJson(nq, "Protein");
+		results.stream().forEach(r -> {
+			logger.info("JSON DATACITE >> " + r);
+		});
+	}
+}
--- a/dhp-workflows/dhp-rdfconverter/src/test/resources/eu/dnetlib/dhp/rdfconverter/bioschema/base64_gzipped_nquads.txt
+++ b/dhp-workflows/dhp-rdfconverter/src/test/resources/eu/dnetlib/dhp/rdfconverter/bioschema/base64_gzipped_nquads.txt
@ -0,0 +1 @@
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
--- a/dhp-workflows/dhp-rdfconverter/src/test/resources/eu/dnetlib/dhp/rdfconverter/bioschema/disprot.nq
+++ b/dhp-workflows/dhp-rdfconverter/src/test/resources/eu/dnetlib/dhp/rdfconverter/bioschema/disprot.nq
@ -0,0 +1,52 @@
+<https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> <http://purl.org/pav/retrievedFrom> <https://disprot.org/DP01454> .
+<https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> <http://purl.org/pav/retrievedOn> "2021-11-25T12:23:57"^^<http://www.w3.org/2001/XMLSchema#dateTime> .
+<https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> <http://purl.org/pav/createdWith> <https://github.com/HW-SWeL/BMUSE/releases/tag/0.5.2> .
+<https://disprot.org/DP01454> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/Protein> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://disprot.org/DP01454> <http://purl.org/dc/terms/conformsTo> <https://bioschemas.org/profiles/Protein/0.11-RELEASE> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://disprot.org/DP01454> <https://schema.org/hasBioPolymerSequence> "MSTLFPSLFPRVTETLWFNLDRPCVEETELQQQEQQHQAWLQSIAEKDNNLVPIGKPASEHYDDEEEEDDEDDEDSEEDSEDDEDMQDMDEMNDYNESPDDGEVNEVDMEGNEQDQDQWMI" <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://disprot.org/DP01454> <https://schema.org/hasSequenceAnnotation> <https://disprot.org/DP01454#disorder-content> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://disprot.org/DP01454> <https://schema.org/hasSequenceAnnotation> <https://disprot.org/DP01454r001> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://disprot.org/DP01454> <https://schema.org/identifier> "https://identifiers.org/disprot:DP01454" <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://disprot.org/DP01454> <https://schema.org/includedInDataset> "https://disprot.org/#2021-08" <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://disprot.org/DP01454> <https://schema.org/name> "Anaphase-promoting complex subunit 15" <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://disprot.org/DP01454> <https://schema.org/sameAs> <http://purl.uniprot.org/uniprot/P60006> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://disprot.org/DP01454> <https://schema.org/taxonomicRange> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0/disprot.org/DP01454/200140588> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://bioschemas.org/profiles/Protein/0.11-RELEASE> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/CreativeWork> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://disprot.org/DP01454#disorder-content> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/SequenceAnnotation> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://disprot.org/DP01454#disorder-content> <https://schema.org/additionalProperty> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0/disprot.org/DP01454/159543474> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://disprot.org/DP01454#disorder-content> <https://schema.org/sequenceLocation> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0/disprot.org/DP01454/77094838> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0/disprot.org/DP01454/159543474> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/PropertyValue> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0/disprot.org/DP01454/159543474> <https://schema.org/name> "Protein disorder content" <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0/disprot.org/DP01454/159543474> <https://schema.org/propertyID> <https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00499> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0/disprot.org/DP01454/159543474> <https://schema.org/value> "5.371900826446281E-1" <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0/disprot.org/DP01454/77094838> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/SequenceRange> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0/disprot.org/DP01454/77094838> <https://schema.org/rangeEnd> "121" <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0/disprot.org/DP01454/77094838> <https://schema.org/rangeStart> "1" <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://disprot.org/DP01454r001> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/SequenceAnnotation> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://disprot.org/DP01454r001> <https://schema.org/additionalProperty> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0/disprot.org/DP01454/1595402293> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://disprot.org/DP01454r001> <https://schema.org/sequenceLocation> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0/disprot.org/DP01454/1951282934> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://disprot.org/DP01454r001> <https://schema.org/subjectOf> <https://identifiers.org/pubmed:26083744> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0/disprot.org/DP01454/1595402293> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/PropertyValue> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0/disprot.org/DP01454/1595402293> <https://schema.org/name> "Term" <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0/disprot.org/DP01454/1595402293> <https://schema.org/value> <https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00076> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00076> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/DefinedTerm> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00076> <https://schema.org/inDefinedTermSet> <https://disprot.org/assets/data/IDPO_v0.2.owl> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00076> <https://schema.org/name> "disorder" <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00076> <https://schema.org/termCode> "IDPO:00076" <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://disprot.org/assets/data/IDPO_v0.2.owl> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/DefinedTermSet> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://disprot.org/assets/data/IDPO_v0.2.owl> <https://schema.org/name> "IDP ontology" <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0/disprot.org/DP01454/1951282934> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/SequenceRange> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0/disprot.org/DP01454/1951282934> <https://schema.org/rangeEnd> "121" <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0/disprot.org/DP01454/1951282934> <https://schema.org/rangeStart> "57" <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://identifiers.org/pubmed:26083744> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/ScholarlyArticle> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0/disprot.org/DP01454/200140588> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/DefinedTerm> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0/disprot.org/DP01454/200140588> <https://schema.org/inDefinedTermSet> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0/disprot.org/DP01454/827138196> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0/disprot.org/DP01454/200140588> <https://schema.org/sameAs> <http://purl.uniprot.org/taxonomy/9606> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0/disprot.org/DP01454/200140588> <https://schema.org/sameAs> <https://identifiers.org/taxonomy:9606> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0/disprot.org/DP01454/200140588> <https://schema.org/sameAs> <http://purl.obolibrary.org/obo/NCBITaxon_9606> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0/disprot.org/DP01454/200140588> <https://schema.org/termCode> "9606" <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0/disprot.org/DP01454/200140588> <https://schema.org/url> <http://purl.bioontology.org/ontology/NCBITAXON/9606> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0/disprot.org/DP01454/827138196> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/DefinedTermSet> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0/disprot.org/DP01454/827138196> <https://schema.org/name> "NCBI taxon" <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0/disprot.org/DP01454/827138196> <https://schema.org/url> <https://bioportal.bioontology.org/ontologies/NCBITAXON> <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
+<https://disprot.org/DP01454> <http://purl.org/dc/terms/title> "DisProt" <https://bioschemas.org/crawl/v1/disprot/DP01454/20211125/0> .
--- a/dhp-workflows/dhp-rdfconverter/src/test/resources/eu/dnetlib/dhp/rdfconverter/bioschema/mobidb.nq
+++ b/dhp-workflows/dhp-rdfconverter/src/test/resources/eu/dnetlib/dhp/rdfconverter/bioschema/mobidb.nq
@ -0,0 +1,118 @@
+<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> <http://purl.org/pav/retrievedFrom> <https://mobidb.org/Q9UPN6> .
+<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> <http://purl.org/pav/retrievedOn> "2021-12-06T14:49:15"^^<http://www.w3.org/2001/XMLSchema#dateTime> .
+<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> <http://purl.org/pav/createdWith> <https://github.com/HW-SWeL/BMUSE/releases/tag/0.5.2> .
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--- a/dhp-workflows/dhp-rdfconverter/src/test/resources/eu/dnetlib/dhp/rdfconverter/bioschema/ped.nq
+++ b/dhp-workflows/dhp-rdfconverter/src/test/resources/eu/dnetlib/dhp/rdfconverter/bioschema/ped.nq
@ -0,0 +1,229 @@
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+<https://proteinensemble.org/PED00014> <http://purl.org/dc/terms/title> "PED" <https://bioschemas.org/crawl/v1/proteinensemble/PED00014/20211206/1> .
--- a/dhp-workflows/dhp-rdfconverter/src/test/resources/log4j.properties
+++ b/dhp-workflows/dhp-rdfconverter/src/test/resources/log4j.properties
@ -0,0 +1,11 @@
+# Set root logger level to DEBUG and its only appender to A1.
+log4j.rootLogger=INFO, A1
+
+# A1 is set to be a ConsoleAppender.
+log4j.appender.A1=org.apache.log4j.ConsoleAppender
+
+# A1 uses PatternLayout.
+log4j.logger.org = ERROR
+log4j.logger.eu.dnetlib = DEBUG
+log4j.appender.A1.layout=org.apache.log4j.PatternLayout
+log4j.appender.A1.layout.ConversionPattern=%-4r [%t] %-5p %c %x - %m%n
--- a/dhp-workflows/pom.xml
+++ b/dhp-workflows/pom.xml
@ -38,6 +38,7 @@
        <module>dhp-usage-raw-data-update</module>
        <module>dhp-broker-events</module>
        <module>dhp-doiboost</module>
+        <module>dhp-rdfconverter</module>
    </modules>

    <pluginRepositories>
--- a/pom.xml
+++ b/pom.xml
@ -105,6 +105,18 @@
 				<enabled>false</enabled>
 			</snapshots>
 		</repository>
+		<repository>
+			<id>dnet-deps</id>
+			<name>D-Net Dependencies</name>
+			<url>https://maven.d4science.org/nexus/content/repositories/dnet-deps/</url>
+			<releases>
+				<enabled>true</enabled>
+			</releases>
+			<snapshots>
+				<enabled>false</enabled>
+			</snapshots>
+			<layout>default</layout>
+		</repository>
 	</repositories>

 	<dependencies>
Author	SHA1	Message	Date
Enrico Ottonello	64bc955444	new script to nquads download from scraping service	2022-07-19 12:12:01 +02:00
Enrico Ottonello	18c9b95cb1	removed duplicated subjects	2022-06-28 13:07:53 +02:00
Enrico Ottonello	33dcf9964c	fixed alternate identifier	2022-05-18 12:02:27 +02:00
Enrico Ottonello	792e78e848	fixed alternate identifier redundant	2022-05-18 10:44:31 +02:00
Enrico Ottonello	aef88f9e5c	added accessrights and hostedby	2022-05-18 10:07:50 +02:00
Enrico Ottonello	f6c37656c9	instance type set to 0046 - Bioentity	2022-05-18 09:46:43 +02:00
Enrico Ottonello	41de8fb785	added ped test with doi citation; fix pmid pid type	2022-05-13 12:27:40 +02:00
Enrico Ottonello	6d4235bd00	removed bmuse workflow module	2022-05-11 11:22:01 +02:00
Enrico Ottonello	baa312f256	updated dhp-rdfconverter version to 1.2.5-SNAPSHOT	2022-05-11 11:20:16 +02:00
Enrico Ottonello	6fa9624c29	merge with beta for bioschemas Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta_bioschema	2022-05-11 10:56:03 +02:00
Enrico Ottonello	0703e0c65f	converter input taken from textfile on hdfs with base64 gzipped rows	2022-05-11 10:43:13 +02:00
Enrico Ottonello	9a0ca0296a	added mobidb constants configuration and test	2022-04-07 13:17:50 +02:00
Enrico Ottonello	d0df02062c	raised runtimeexception on record without title or url	2022-04-06 13:19:58 +02:00
Enrico Ottonello	7fc5b97871	skipped record without title or url	2022-04-06 13:08:48 +02:00
Enrico Ottonello	a203c33693	added disprot constants configuration	2022-04-06 12:48:24 +02:00
Enrico Ottonello	afb46d71f7	added subjects to disprot output	2022-04-06 12:22:10 +02:00
Enrico Ottonello	98178b3165	custom deserializer for property value type working for both ped and disprot	2022-04-05 10:47:17 +02:00
Enrico Ottonello	f11dfc51f7	fix resolved url format, added alternate identifier from original pid	2022-03-22 16:39:21 +01:00
Enrico Ottonello	afe84c4244	added subjects to oaf generation	2022-03-18 18:10:39 +01:00
Enrico Ottonello	db831e6f43	removed dynamic allocation on wf	2022-03-18 17:43:53 +01:00
Enrico Ottonello	861f2a3306	added titles merging title page and protein identifier	2022-03-18 14:51:57 +01:00
Enrico Ottonello	f43bfdb594	added subjects	2022-03-17 19:24:07 +01:00
Enrico Ottonello	3ef5eec3a6	added bmuse and rdfconverter modules - added repository for bmuse jars	2022-03-16 12:07:36 +01:00
Enrico Ottonello	41284ec2f9	retrieving vocabulary terms from nquads	2022-03-16 11:26:50 +01:00
Enrico Ottonello	e53a606afc	added date of collection, resource type as workflow parameter	2022-03-15 17:36:48 +01:00
Enrico Ottonello	bd37f14941	added working ocean configuration	2022-03-03 14:38:21 +01:00
Enrico Ottonello	29ee1b9d82	added datasource key to workflow parameter to properly choose collected from and id values	2022-03-03 12:31:29 +01:00
Enrico Ottonello	e57216a1fa	added oozie workflow to generate bioschema dataset on hdfs	2022-03-02 16:58:10 +01:00
Enrico Ottonello	f28d7e3b9d	added spark dataset creation	2022-03-02 12:12:37 +01:00
Enrico Ottonello	8f281846a4	update test file	2022-02-28 13:37:53 +01:00
Enrico Ottonello	f833de8a75	added relatedIdentifierType, fix IsCitedBy value	2022-02-28 13:37:28 +01:00
Enrico Ottonello	7f9636ef00	added alternateIdentifiers to oaf	2022-02-25 14:42:08 +01:00
Enrico Ottonello	2f5caef77b	resolution of generated relations url to uniprot and pubmed datasources	2022-02-24 16:59:50 +01:00
Enrico Ottonello	4975278558	added modules for downloading data with bmuse and converting to datacite json format	2022-02-22 12:53:19 +01:00
Enrico Ottonello	2bc79c50f8	mapping bioschema to oaf	2022-02-22 11:46:29 +01:00
Enrico Ottonello	446f81ee60	wf to generate oaf from bioschema json datacite	2022-02-22 11:42:57 +01:00
				`@ -0,0 +1 @@`
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