 Miriam Baglioni
|
774cdb190e
|
changes to mirror the last dump of the graph with the ols data model.
|
2021-07-13 18:57:24 +02:00 |
|
Miriam Baglioni
|
52ce35d57b
|
-
|
2021-07-13 18:08:46 +02:00 |
|
Miriam Baglioni
|
970b387b8d
|
modification to allow dump of a single community
|
2021-07-13 18:08:10 +02:00 |
|
Miriam Baglioni
|
c028feef4f
|
workflow for the dump as sub workflows
|
2021-07-13 18:06:44 +02:00 |
 Sandro La Bruzzo
|
09fccf8000
|
added workflow to serialize scholix and summary in json
|
2021-07-09 11:01:42 +02:00 |
|
Sandro La Bruzzo
|
cd17e19044
|
implemented branch workflow to import datacite and crossref in scholexplorer
|
2021-07-08 21:20:19 +02:00 |
|
Sandro La Bruzzo
|
8a034e46e1
|
updated baseline workflow
|
2021-07-08 11:11:41 +02:00 |
|
Sandro La Bruzzo
|
8535506c22
|
added scholix generation
|
2021-07-06 17:18:06 +02:00 |
|
Sandro La Bruzzo
|
c6fa8598e1
|
massive code refactor:
removed modules dhp-*-scholexplorer
|
2021-07-01 22:13:45 +02:00 |
|
Sandro La Bruzzo
|
84b834c893
|
added test dataset test for pangaea
|
2021-06-30 17:31:09 +02:00 |
|
Sandro La Bruzzo
|
1a6b398968
|
implemented Creation of Raw Graph and Resolution
|
2021-06-30 17:27:55 +02:00 |
|
Sandro La Bruzzo
|
623a0c4edb
|
code Refactor, renaming packages
|
2021-06-30 11:09:30 +02:00 |
|
Sandro La Bruzzo
|
f36f92287d
|
implemented mapping from Crossref Event Data to Oaf
|
2021-06-29 10:21:23 +02:00 |
|
Sandro La Bruzzo
|
511ec14c63
|
implemented mapping from EBI and Scholix Resolved to OAF
|
2021-06-28 22:04:22 +02:00 |
|
Sandro La Bruzzo
|
ad50415167
|
Merge remote-tracking branch 'origin/stable_ids' into stable_id_scholexplorer
|
2021-06-24 17:20:50 +02:00 |
|
Sandro La Bruzzo
|
80e15cc455
|
implemented mapping from uniprot, pdb and ebi links
|
2021-06-24 17:20:00 +02:00 |
 Claudio Atzori
|
50fc5a64a0
|
[raw_all] Aggregator graph creation merges claims (updates) with the corresponding entity
|
2021-06-23 11:49:42 +02:00 |
|
Sandro La Bruzzo
|
cc0f2b11fb
|
Implemented mapping from pubmed baseline to OAF
|
2021-06-16 14:56:24 +02:00 |
|
Claudio Atzori
|
2039bb9f5f
|
orcid / orcid_pending cleaning backported from master branch
|
2021-06-14 09:40:50 +02:00 |
|
Claudio Atzori
|
dd19c4ac5a
|
Merge pull request 'import_new_mdstores' (#112) from import_new_mdstores into stable_ids
Reviewed-on: #112
|
2021-06-14 09:23:55 +02:00 |
|
Sandro La Bruzzo
|
e57294ac99
|
implemented changes on PUBMed dataflow
|
2021-06-03 10:52:09 +02:00 |
 Michele Artini
|
e950750262
|
add nodes to import hdfs mdstores
|
2021-06-01 10:48:50 +02:00 |
|
Michele Artini
|
e9f2b6037c
|
patch of mdstore records
|
2021-05-31 11:36:26 +02:00 |
|
Michele Artini
|
ad56a44fda
|
save as gzipped sequence file
|
2021-05-28 14:45:39 +02:00 |
|
Michele Artini
|
4fa5671d16
|
first implementation of Hdfs Mdstores Importer
|
2021-05-27 16:22:07 +02:00 |
|
Sandro La Bruzzo
|
714b71bd21
|
updated pubmed
|
2021-05-04 14:54:12 +02:00 |
 Alessia Bardi
|
9a20057615
|
fixed query for organisations' pids
|
2021-04-29 15:23:39 +02:00 |
|
Sandro La Bruzzo
|
7f8848ecdd
|
added first implementation of Pangaea Mapping
|
2021-04-27 11:30:37 +02:00 |
miconis
|
0393cdce42
|
addition of alternative names in export queries
|
2021-04-20 12:45:21 +02:00 |
|
miconis
|
cadd0a5de8
|
modification of the queries for openorgs: they now consider also pending orgs
|
2021-04-20 12:06:56 +02:00 |
|
miconis
|
11b22b2d23
|
bug fix in the query, it now exports only relations with non-hidden organizations
|
2021-04-08 11:51:47 +02:00 |
|
miconis
|
0857100fb8
|
implementation of the tests for the openorgs integration in the openaire provision
|
2021-04-07 18:42:16 +02:00 |
|
miconis
|
bf685d849f
|
addition of pids in the query for the export of openorgs for the provision, addition of ec_fields in the openorgs model
|
2021-04-07 14:27:43 +02:00 |
|
miconis
|
eaaefb8b4c
|
implementation of the procedure to reuse content of different dbs when creating the raw graph
|
2021-04-06 14:35:51 +02:00 |
|
miconis
|
c39c82dfe9
|
modification of the jobs for the integration of openorgs in the provision, dedup records are no more created by merging but simply taking results of openorgs portal
|
2021-04-06 14:31:00 +02:00 |
|
Claudio Atzori
|
9237d55d7f
|
[OpenOrgsWf] cleanup
|
2021-03-29 17:40:34 +02:00 |
|
Claudio Atzori
|
7f4e9479ec
|
[OpenOrgsWf] graph construction wf: allow to skip the import openorgs node (importOpenorgs true|false)
|
2021-03-29 16:59:16 +02:00 |
|
miconis
|
f446580e9f
|
code refactoring (useless classes and wf removed), implementation of the test for the openorgs dedup
|
2021-03-29 16:10:46 +02:00 |
|
miconis
|
2355cc4e9b
|
minor changes and bug fix
|
2021-03-29 10:07:12 +02:00 |
|
miconis
|
28c1cdd132
|
merged stable_ids into openorgswf
|
2021-03-25 10:44:49 +01:00 |
|
miconis
|
348b0ef921
|
bug fix, implementation of the workflow for the creation of raw_organizations (openorgs dedup), addition of the pid lists to the openorgs postgres db
|
2021-03-24 15:51:27 +01:00 |
|
Claudio Atzori
|
8d2bb24512
|
merged from master
|
2021-03-08 15:44:34 +01:00 |
|
miconis
|
4b2124a18e
|
implementation of the openorgs wfs, implementation of the raw_all wf to migrate openorgs db entities
|
2021-02-10 11:51:50 +01:00 |
|
Michele Artini
|
991e675dc6
|
validation in claim rels
|
2020-12-14 15:41:25 +01:00 |
|
Claudio Atzori
|
12e2f930c8
|
resolved conflicts
|
2020-12-10 10:57:39 +01:00 |
|
Miriam Baglioni
|
5fb65ffc4a
|
merge branch with master
|
2020-12-03 11:24:35 +01:00 |
|
Miriam Baglioni
|
ea88dc3401
|
fixed issue in property name
|
2020-12-03 11:24:23 +01:00 |
|
Claudio Atzori
|
893ac4a77b
|
GenerateEntitiesApplication can be configured to hash the id value or not
|
2020-12-02 09:30:06 +01:00 |
|
Miriam Baglioni
|
5fbe54ef54
|
#61 (comment)
|
2020-11-25 18:10:28 +01:00 |
|
Miriam Baglioni
|
ed01e5a5e1
|
#61 (comment)
|
2020-11-25 18:09:34 +01:00 |
|
Miriam Baglioni
|
f5e5e92a10
|
changed because of #61 (comment)
|
2020-11-25 17:58:53 +01:00 |
|
Claudio Atzori
|
dfd6205b95
|
Consistency graph workflow merges all the entities by ID
|
2020-11-25 14:55:32 +01:00 |
|
Miriam Baglioni
|
e7e418e444
|
added decision node to verify if to upload in Zenodo
|
2020-11-25 13:44:10 +01:00 |
|
Miriam Baglioni
|
39f4a20873
|
chenged the path and the name for saving the communities_infrastructures dump file
|
2020-11-24 14:47:32 +01:00 |
|
Miriam Baglioni
|
7e14452a87
|
final versione of the wf to get the dump of results associated to at least one funder per funder
|
2020-11-24 14:46:34 +01:00 |
|
Miriam Baglioni
|
c167a18057
|
added new parameter for the dumpType
|
2020-11-24 14:45:50 +01:00 |
|
Claudio Atzori
|
33bae02451
|
reverted behaviour of the cleaning workflow: grouping entities by ID will be managed differently
|
2020-11-24 14:42:33 +01:00 |
|
Miriam Baglioni
|
0a9db67eec
|
-
|
2020-11-20 12:21:33 +01:00 |
|
Miriam Baglioni
|
cf3f47563f
|
new parameter files
|
2020-11-19 19:16:05 +01:00 |
|
Miriam Baglioni
|
24c56fa7a3
|
new logic and workflow for dump of results with link to projects. In this implementation the result match the model of the communityresult.
|
2020-11-19 19:15:39 +01:00 |
|
Miriam Baglioni
|
fafb688887
|
-
|
2020-11-18 18:56:48 +01:00 |
|
Miriam Baglioni
|
46ba3793f6
|
code, workflow and parameters for the dump of the results associated to funders
|
2020-11-18 16:47:31 +01:00 |
|
Miriam Baglioni
|
57cac36898
|
changed the workflow name
|
2020-11-18 13:38:03 +01:00 |
|
Claudio Atzori
|
6ab1ce53c9
|
fixed condition in result pid cleaning; cleanup
|
2020-11-16 10:09:17 +01:00 |
|
Claudio Atzori
|
4de8c8b237
|
fixed workflow variable name
|
2020-11-16 10:03:11 +01:00 |
|
Claudio Atzori
|
5d4e34e26a
|
fixed typo in variable name
|
2020-11-14 10:32:26 +01:00 |
|
Claudio Atzori
|
528231a287
|
grouping graph entities by id turned out to be an easy extension for the already existing cleaning workflow
|
2020-11-13 15:37:48 +01:00 |
|
Claudio Atzori
|
2bed29eb09
|
WIP: added oozie workflow for grouping graph entities by id
|
2020-11-13 10:05:12 +01:00 |
|
Claudio Atzori
|
13e36a4da0
|
WIP: added oozie workflow for grouping graph entities by id
|
2020-11-13 10:05:02 +01:00 |
|
Michele Artini
|
40160d171f
|
organizations pids
|
2020-11-09 12:58:36 +01:00 |
|
Claudio Atzori
|
d10447e747
|
re-packaged graph dump workflow sources
|
2020-11-05 17:38:18 +01:00 |
|
Miriam Baglioni
|
f8e9bda24c
|
merge branch with master
|
2020-11-05 16:31:18 +01:00 |
|
Miriam Baglioni
|
be5ed8f554
|
added check to avoid sending empty metadata.
|
2020-11-05 16:10:17 +01:00 |
|
Claudio Atzori
|
2148a51fae
|
minor changes
|
2020-11-05 11:24:12 +01:00 |
|
Miriam Baglioni
|
b90a945c49
|
removed property files for pid graph dump
|
2020-11-04 17:28:33 +01:00 |
|
Alessia Bardi
|
51808b5afd
|
Updated descriptions
|
2020-11-04 12:29:48 +01:00 |
|
Alessia Bardi
|
e6becf8659
|
Updated descriptions
|
2020-11-04 12:17:57 +01:00 |
|
Alessia Bardi
|
0abe0eee33
|
Updated descriptions
|
2020-11-04 12:15:30 +01:00 |
|
Alessia Bardi
|
f6ab238f5d
|
Updated descriptions
|
2020-11-04 11:50:47 +01:00 |
|
Miriam Baglioni
|
c209284ca7
|
new schemas for the entities in the dump with added descriptions
|
2020-11-03 16:58:08 +01:00 |
|
Miriam Baglioni
|
08806deddf
|
added the splitSize non mandatory parameter. Default size 10G
|
2020-11-03 16:57:34 +01:00 |
|
Miriam Baglioni
|
7d2eda43ca
|
added new non mandatory property publish to determine if to publish the upload or leave it pending. Default value flase
|
2020-11-03 16:57:01 +01:00 |
|
Miriam Baglioni
|
d4382b54df
|
moved the tar archive with maz size on common module
|
2020-11-03 16:54:50 +01:00 |
|
Miriam Baglioni
|
78fdb11c3f
|
merge branch with master
|
2020-10-29 12:55:22 +01:00 |
|
Sandro La Bruzzo
|
1d9fdb7367
|
fixed spark memory issue in SparkSplitOafTODLIEntities
|
2020-10-28 12:30:32 +01:00 |
|
Miriam Baglioni
|
3241ec1777
|
added connection timeout and socket timeout 600 sec
|
2020-10-27 16:12:11 +01:00 |
|
Claudio Atzori
|
b961dc7d1e
|
added originalid to the fields in the result graph view
|
2020-10-09 13:53:15 +02:00 |
|
Miriam Baglioni
|
11b7eaae09
|
changed the name of the folder where to store the context entity from context to communities_infrastructures
|
2020-10-05 11:24:54 +02:00 |
|
Claudio Atzori
|
c2a6e2a9bf
|
fixed mapping for datasource journal info (ISSNs)
|
2020-10-02 09:37:08 +02:00 |
|
Miriam Baglioni
|
01117a46e1
|
whole workflow activated
|
2020-10-01 17:19:21 +02:00 |
|
Miriam Baglioni
|
fcaedac980
|
merge branch with master
|
2020-10-01 16:46:59 +02:00 |
|
Claudio Atzori
|
4287164aba
|
include relevantdate field in the result view
|
2020-10-01 10:28:55 +02:00 |
|
Miriam Baglioni
|
983a12ed15
|
temporary modification to allow the upload of files in the sandbox without the neew to recreate the mapping from scratch
|
2020-09-25 16:41:51 +02:00 |
|
Miriam Baglioni
|
8b36d19182
|
added property depositionId and chenage property newVersion that became string from boolean to handle the three possible distinct values
|
2020-09-25 16:41:15 +02:00 |
|
Miriam Baglioni
|
54800fb9b0
|
enabled only the step to upload in zenodo
|
2020-09-25 14:40:22 +02:00 |
|
Miriam Baglioni
|
de6c4d46d8
|
fixed conflicts
|
2020-09-24 15:35:01 +02:00 |
|
Claudio Atzori
|
044d3a0214
|
fixed query used to load datasources in the Graph
|
2020-09-24 13:48:58 +02:00 |
|
Claudio Atzori
|
42f55395c8
|
fixed order of the ISSNs returned by the SQL query
|
2020-09-24 12:09:58 +02:00 |
|
Claudio Atzori
|
9a7e72d528
|
using concat_ws to join textual columns from PSQL. When using || to perform the concatenation, Null columns makes the operation result to be Null
|
2020-09-24 10:42:47 +02:00 |
|
Miriam Baglioni
|
e2ceefe9be
|
-
|
2020-09-14 14:33:28 +02:00 |