 Claudio Atzori
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97b1c4057c
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WIP: graph cleaner implementation
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2020-06-12 10:45:18 +02:00 |
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Claudio Atzori
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ba8a024af9
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avoid NPEs merging titles
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2020-06-12 10:45:11 +02:00 |
 Michele Artini
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30ea1bda88
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oozie workflow
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2020-06-12 10:42:35 +02:00 |
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Michele Artini
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c22cb5a3c6
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refactoring
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2020-06-12 09:47:55 +02:00 |
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Michele Artini
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472cf77639
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Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop
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2020-06-11 14:30:47 +02:00 |
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Michele Artini
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c6b5bb3f17
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orcid events
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2020-06-11 14:30:24 +02:00 |
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Michele Artini
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c2e1b66e83
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Revert "orcid events"
This reverts commit 48959e9a17.
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2020-06-11 14:28:03 +02:00 |
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Michele Artini
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48959e9a17
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orcid events
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2020-06-11 14:24:02 +02:00 |
 Alessia Bardi
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e79943965b
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Fixes #5604: field oamandatepublications in XML
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2020-06-11 12:49:31 +02:00 |
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Michele Artini
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a41e0cb648
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missing landingPage urls in instances
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2020-06-11 12:28:34 +02:00 |
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Michele Artini
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04fdcacd83
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results with all joined entities
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2020-06-11 11:25:18 +02:00 |
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Michele Artini
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99f88e1cb8
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fixed generation entities from claims
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2020-06-11 10:51:57 +02:00 |
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Claudio Atzori
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d1d92c4d8c
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fixed integration of claims in the graph
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2020-06-11 10:12:00 +02:00 |
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Claudio Atzori
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953da4a427
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Merge branch 'master' into graph_cleaning
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2020-06-10 21:36:56 +02:00 |
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Claudio Atzori
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f1bce64391
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WIP: graph cleaner implementation
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2020-06-10 21:36:31 +02:00 |
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Claudio Atzori
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67c7b31ba6
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Merge branch 'master' into graph_cleaning
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2020-06-10 15:00:35 +02:00 |
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Claudio Atzori
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3ebf81d2b0
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Merge pull request 'oaf-store-interpretation' (#21) from oaf-store-interpretation into master
Looks good, thanks Michele!
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2020-06-10 14:58:09 +02:00 |
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Michele Artini
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5869cb76b3
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reformatting
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2020-06-10 12:11:16 +02:00 |
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Michele Artini
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c08e66e01e
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fixed a workflow parameter
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2020-06-10 10:11:56 +02:00 |
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Michele Artini
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7177a32d75
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import of invisible stores
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2020-06-10 10:04:00 +02:00 |
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Claudio Atzori
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ce12f236bb
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disabled test, need to need to update the joined_entity.json file
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2020-06-09 20:07:36 +02:00 |
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Claudio Atzori
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a2fdf85ba1
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WIP: graph cleaner implementation
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2020-06-09 19:52:53 +02:00 |
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Alessia Bardi
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4551c1082f
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mapping csv for orcid
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2020-06-09 18:08:47 +02:00 |
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Alessia Bardi
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2d3f7d1eb4
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fixed log classes to make the ORCID test run
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2020-06-09 18:07:14 +02:00 |
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Alessia Bardi
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a3a6755d58
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mapping csv for Unpaywall
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2020-06-09 17:45:44 +02:00 |
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Claudio Atzori
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d9f33582c5
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WIP: graph cleaner implementation
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2020-06-09 17:20:40 +02:00 |
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Alessia Bardi
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f3b033cf09
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added csv line for funders from Crossref
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2020-06-09 17:08:26 +02:00 |
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Alessia Bardi
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79969d78b9
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Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop
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2020-06-09 17:05:39 +02:00 |
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Alessia Bardi
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fc4d220964
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updated function name for SNSF
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2020-06-09 17:05:31 +02:00 |
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Michele Artini
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baaa55f4a3
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use of pace to calculate trusts
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2020-06-09 16:01:31 +02:00 |
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Alessia Bardi
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33b130ec43
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Mapping instructions for MAG
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2020-06-09 15:57:15 +02:00 |
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Alessia Bardi
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d6de406e11
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fixed classid for subjects
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2020-06-09 14:43:34 +02:00 |
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Alessia Bardi
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f072125152
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map volume and issue in journal information from MAG
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2020-06-09 14:32:10 +02:00 |
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Alessia Bardi
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b7cb1163ea
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identifiers always start with 50
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2020-06-09 10:39:11 +02:00 |
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Alessia Bardi
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181f52b9bc
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Added mapping table for Crossref
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2020-06-08 19:33:47 +02:00 |
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Alessia Bardi
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9fd25887f7
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Result identifiers all start with 50|
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2020-06-08 19:32:24 +02:00 |
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Alessia Bardi
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16cb073b15
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set the instance datepfacceptance with the Crossref createdDate in case the issuedDate is blank
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2020-06-08 19:06:03 +02:00 |
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Michele Artini
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bb659d870c
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join simrels
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2020-06-08 16:29:01 +02:00 |
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Michele Artini
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81e85465d8
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join simrels
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2020-06-08 16:26:16 +02:00 |
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Claudio Atzori
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3d871c6651
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Merge branch 'master' into graph_cleaning
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2020-06-08 15:23:24 +02:00 |
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Claudio Atzori
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25a093b1a4
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integrated changes from master
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2020-06-08 15:04:00 +02:00 |
 Sandro La Bruzzo
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e34e7d6728
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merge DOIBoost
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2020-06-08 08:32:22 +02:00 |
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Sandro La Bruzzo
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e46e2a4776
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Merge remote-tracking branch 'origin/master' into doiboost
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2020-06-08 08:17:14 +02:00 |
 Spyros Zoupanos
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3576dd186b
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Adding hive timeout as workflow parameter
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2020-06-05 22:29:54 +03:00 |
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Claudio Atzori
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b2349659cf
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WIP: graph property fixing implementation
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2020-06-05 18:37:38 +02:00 |
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Michele Artini
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a73973a74b
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partial implemantation of broker events generation
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2020-06-05 11:43:00 +02:00 |
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Michele Artini
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7e82996e7c
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partial implemantation of broker events generation
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2020-06-04 17:10:43 +02:00 |
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Sandro La Bruzzo
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b57e8ba374
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Merge remote-tracking branch 'origin/master' into doiboost
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2020-06-04 14:39:41 +02:00 |
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Sandro La Bruzzo
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7ac1ba2e35
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improvement DOIBoost
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2020-06-04 14:39:20 +02:00 |
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Michele Artini
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97177d7f7b
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partial refactoring
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2020-06-04 10:26:34 +02:00 |
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Sandro La Bruzzo
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13815d5d13
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improvement DOIBoost
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2020-06-01 17:52:12 +02:00 |
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Claudio Atzori
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05f269a1c0
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kryo based parallel implementation of CreateRelatedEntitiesJob_phase2, now works by OafType; introduced custom aggregator in AdjacencyListBuilderJob
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2020-06-01 00:32:42 +02:00 |
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Claudio Atzori
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5e23fb3a74
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code formatting
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2020-05-30 10:52:56 +02:00 |
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Claudio Atzori
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54ca8ed6c3
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uniformed param name (isLookupUrl), Vocab model classes defined as Serializable
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2020-05-29 18:17:30 +02:00 |
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Claudio Atzori
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1577bd5b8b
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added IsLookupUrl to the raw_db workflow parameters
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2020-05-29 16:18:16 +02:00 |
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Claudio Atzori
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91d78b825b
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Merge pull request 'import from db using is vocabularies' (#17) from result_pids into master
Looks good, thanks Michele!
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2020-05-29 16:02:40 +02:00 |
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Michele Artini
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adb798faa5
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import from db using is vocabularies
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2020-05-29 12:03:51 +02:00 |
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Claudio Atzori
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6f5f498c78
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restored common properties driving executor-cores and executor-memory in join_organization_relations wf node
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2020-05-29 11:22:00 +02:00 |
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Claudio Atzori
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b2f9564f13
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WIP: fixed PrepareRelationsJob; parallel implementation of CreateRelatedEntitiesJob_phase2, now works by OafType; introduced custom aggregator in AdjacencyListBuilderJob
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2020-05-29 10:58:15 +02:00 |
 Miriam Baglioni
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dfa4997a4f
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removed commented code
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2020-05-29 10:45:18 +02:00 |
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Miriam Baglioni
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6f1eea28b6
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changed message in log
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2020-05-29 10:41:39 +02:00 |
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Sandro La Bruzzo
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b87b3ddb6b
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changed mapping ORCIDToOAF
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2020-05-29 09:32:04 +02:00 |
|
Miriam Baglioni
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8b6e886fb6
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added new resource for testing
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2020-05-28 23:54:31 +02:00 |
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Miriam Baglioni
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6989fb9c8a
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changed the project test according to the newly introduced join with the db project codes
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2020-05-28 23:53:24 +02:00 |
|
Miriam Baglioni
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782984d8e5
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added needed parameter
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2020-05-28 23:52:41 +02:00 |
|
Miriam Baglioni
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01f7876595
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fix issue with flatMap - the return type must not be null
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2020-05-28 23:50:32 +02:00 |
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Claudio Atzori
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a57965a3ea
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limiting the dimensions of outliers
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2020-05-28 17:36:37 +02:00 |
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Miriam Baglioni
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773735f870
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added the path to the file containing the projects code from the db
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2020-05-28 17:30:45 +02:00 |
|
Miriam Baglioni
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6a15067a64
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added one step in the workflow
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2020-05-28 17:30:09 +02:00 |
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Miriam Baglioni
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5309a99a70
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modified the PrepareProjects to consider those in the db
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2020-05-28 17:29:53 +02:00 |
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Miriam Baglioni
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b737ed8236
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added part to read projects from the openaire db to filter out those in the csv file that are not in the db
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2020-05-28 17:29:21 +02:00 |
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Claudio Atzori
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821be1f8b6
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experimental implementation of custom aggregation using kryo encoders
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2020-05-28 13:53:13 +02:00 |
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Claudio Atzori
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83504ecace
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limiting the maximum number of authors allowed in XML records to MAX_AUTHORS = 200; authors with ORCID can exceed that limit
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2020-05-28 13:52:30 +02:00 |
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Claudio Atzori
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ef11593068
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JoinedEntity.links defined as empty list by default
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2020-05-28 13:50:44 +02:00 |
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Claudio Atzori
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5dea155a87
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increased number of partitions produced by the join_all_entities phase as well as spark.sql.shuffle.partitions in adjancency_lists phase
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2020-05-28 13:49:59 +02:00 |
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Miriam Baglioni
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35b7279147
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changed test because data are saved as SequenceFile now, and because of the group by the umber of produced update decrease
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2020-05-28 10:26:12 +02:00 |
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Miriam Baglioni
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37c155b86a
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merge branch with fork master
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2020-05-28 10:09:51 +02:00 |
|
Miriam Baglioni
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df44db686a
|
refactoring
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2020-05-28 10:07:00 +02:00 |
|
Miriam Baglioni
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87b07f4af8
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removed unused variables
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2020-05-28 10:05:43 +02:00 |
|
Miriam Baglioni
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1060977272
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added fs actions to remove and the create the workingDir
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2020-05-28 10:04:36 +02:00 |
|
Miriam Baglioni
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96d1a3c431
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deleted the file were to store the csv files
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2020-05-28 10:04:10 +02:00 |
|
Miriam Baglioni
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669c05c771
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added groupBy before creating Actions
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2020-05-28 10:00:45 +02:00 |
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Sandro La Bruzzo
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02f90eeb07
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Merge remote-tracking branch 'origin/master' into doiboost
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2020-05-28 09:58:32 +02:00 |
|
Sandro La Bruzzo
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7d29b61c62
|
code refactor
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2020-05-28 09:57:46 +02:00 |
|
Claudio Atzori
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fdd54bad1c
|
code formatting
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2020-05-27 19:31:54 +02:00 |
|
Miriam Baglioni
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1855453434
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changed the outputdir of the last step
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2020-05-27 17:59:36 +02:00 |
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Claudio Atzori
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b9b1bc9967
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Merge branch 'master' into provision_indexing
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2020-05-27 12:55:20 +02:00 |
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Claudio Atzori
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aac1515b58
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Merge pull request 'result_pids without conflicts ???' (#16) from result_pids into master
Looks good, thanks Michele
|
2020-05-27 12:54:52 +02:00 |
|
Michele Artini
|
f5ce7d76e1
|
resolve conflicts
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2020-05-27 12:49:17 +02:00 |
|
Claudio Atzori
|
cfd753217c
|
repartition the join_entities in 24k files
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2020-05-27 12:44:01 +02:00 |
|
Claudio Atzori
|
2f1a623d09
|
sync from master branch
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2020-05-27 12:39:58 +02:00 |
|
Claudio Atzori
|
9e4ec1543b
|
updated test
|
2020-05-27 12:38:42 +02:00 |
|
Claudio Atzori
|
8047d16dd9
|
added RDD based adjacency list creation procedure
|
2020-05-27 12:38:12 +02:00 |
|
Claudio Atzori
|
f057dcdf65
|
limit the max number of externalreferences to MAX_EXTERNAL_ENTITIES
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2020-05-27 12:37:33 +02:00 |
|
Michele Artini
|
b81f2741d2
|
xquery
|
2020-05-27 12:10:20 +02:00 |
|
Michele Artini
|
a25598140a
|
result pids (new xpaths + IS vocabularies)
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2020-05-27 12:10:20 +02:00 |
|
Michele Artini
|
7a7272d9ec
|
result pids (new xpaths + IS vocabularies)
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2020-05-27 12:10:20 +02:00 |
|
Michele Artini
|
3ceb2d2853
|
match terms with vocabularies
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2020-05-27 11:34:13 +02:00 |
|
Claudio Atzori
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4e36d689dd
|
fixed XML serialization for children sub-elements (duplicates & externalreferences)
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2020-05-26 18:30:40 +02:00 |
|
Miriam Baglioni
|
92e3a52e91
|
merge branch with fork master
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2020-05-26 15:57:51 +02:00 |