D-Net
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dnet-hadoop
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Code Issues 14 Pull Requests 13 Projects 2 Releases 2 Wiki Activity

Merge remote-tracking branch 'origin/master' into doiboost

This commit is contained in:
Sandro La Bruzzo 2020-06-08 08:17:14 +02:00
parent b57e8ba374 94ea8f82a7
commit e46e2a4776
13 changed files with 259 additions and 79 deletions
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2
dhp-workflows/dhp-broker-events/pom.xml
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@ -57,7 +57,7 @@
<dependency>
<groupId>eu.dnetlib</groupId>
<artifactId>dnet-openaire-broker-common</artifactId>
<version>[2.0.0,3.0.0)</version>
<version>[2.0.1,3.0.0)</version>
</dependency>
</dependencies>

31
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/model/EventFactory.java
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@ -12,7 +12,6 @@ import org.apache.commons.codec.digest.DigestUtils;
import org.apache.commons.lang3.StringUtils;
import org.apache.commons.lang3.time.DateUtils;
import eu.dnetlib.broker.objects.OpenAireEventPayload;
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
import eu.dnetlib.dhp.schema.oaf.Author;
import eu.dnetlib.dhp.schema.oaf.KeyValue;
@ -37,15 +36,12 @@ public class EventFactory {
final Map<String, Object> map = createMapFromResult(updateInfo);
final String payload = createPayload(updateInfo);
final String eventId = calculateEventId(
updateInfo.getTopicPath(), updateInfo.getTarget().getOriginalId().get(0),
updateInfo.getHighlightValueAsString());
final String eventId =
calculateEventId(updateInfo.getTopicPath(), updateInfo.getTarget().getOriginalId().get(0), updateInfo.getHighlightValueAsString());
res.setEventId(eventId);
res.setProducerId(PRODUCER_ID);
res.setPayload(payload);
res.setPayload(updateInfo.asBrokerPayload().toJSON());
res.setMap(map);
res.setTopic(updateInfo.getTopicPath());
res.setCreationDate(now);
@ -54,15 +50,6 @@ public class EventFactory {
return res;
}
private static String createPayload(final UpdateInfo<?> updateInfo) {
final OpenAireEventPayload payload = new OpenAireEventPayload();
// TODO
updateInfo.compileHighlight(payload);
return payload.toJSON();
}
private static Map<String, Object> createMapFromResult(final UpdateInfo<?> updateInfo) {
final Map<String, Object> map = new HashMap<>();
@ -93,17 +80,13 @@ public class EventFactory {
final List<StructuredProperty> subjects = target.getSubject();
if (subjects.size() > 0) {
map
.put(
"target_publication_subject_list",
subjects.stream().map(StructuredProperty::getValue).collect(Collectors.toList()));
.put("target_publication_subject_list", subjects.stream().map(StructuredProperty::getValue).collect(Collectors.toList()));
}
final List<Author> authors = target.getAuthor();
if (authors.size() > 0) {
map
.put(
"target_publication_author_list",
authors.stream().map(Author::getFullname).collect(Collectors.toList()));
.put("target_publication_author_list", authors.stream().map(Author::getFullname).collect(Collectors.toList()));
}
// PROVENANCE INFO
@ -130,9 +113,7 @@ public class EventFactory {
}
private static long parseDateTolong(final String date) {
if (StringUtils.isBlank(date)) {
return -1;
}
if (StringUtils.isBlank(date)) { return -1; }
try {
return DateUtils.parseDate(date, DATE_PATTERNS).getTime();
} catch (final ParseException e) {

42
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/GenerateEventsApplication.java
View File

@ -43,20 +43,21 @@ import eu.dnetlib.dhp.broker.oa.matchers.relatedPublications.EnrichMissingPublic
import eu.dnetlib.dhp.broker.oa.matchers.relatedPublications.EnrichMissingPublicationIsSupplementedBy;
import eu.dnetlib.dhp.broker.oa.matchers.relatedPublications.EnrichMissingPublicationIsSupplementedTo;
import eu.dnetlib.dhp.broker.oa.matchers.relatedPublications.EnrichMissingPublicationReferences;
import eu.dnetlib.dhp.broker.oa.matchers.relatedSoftware.EnrichMissingSoftware;
import eu.dnetlib.dhp.broker.oa.matchers.relatedSoftware.EnrichMoreSoftware;
import eu.dnetlib.dhp.broker.oa.matchers.simple.EnrichMissingAbstract;
import eu.dnetlib.dhp.broker.oa.matchers.simple.EnrichMissingAuthorOrcid;
import eu.dnetlib.dhp.broker.oa.matchers.simple.EnrichMissingOpenAccess;
import eu.dnetlib.dhp.broker.oa.matchers.simple.EnrichMissingPid;
import eu.dnetlib.dhp.broker.oa.matchers.simple.EnrichMissingPublicationDate;
import eu.dnetlib.dhp.broker.oa.matchers.simple.EnrichMissingSoftware;
import eu.dnetlib.dhp.broker.oa.matchers.simple.EnrichMissingSubject;
import eu.dnetlib.dhp.broker.oa.matchers.simple.EnrichMoreOpenAccess;
import eu.dnetlib.dhp.broker.oa.matchers.simple.EnrichMorePid;
import eu.dnetlib.dhp.broker.oa.matchers.simple.EnrichMoreSoftware;
import eu.dnetlib.dhp.broker.oa.matchers.simple.EnrichMoreSubject;
import eu.dnetlib.dhp.broker.oa.util.BrokerConstants;
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
import eu.dnetlib.dhp.common.HdfsSupport;
import eu.dnetlib.dhp.schema.oaf.OafEntity;
import eu.dnetlib.dhp.schema.oaf.Project;
import eu.dnetlib.dhp.schema.oaf.Publication;
import eu.dnetlib.dhp.schema.oaf.Relation;
@ -177,14 +178,6 @@ public class GenerateEventsApplication {
}
private static <SRC extends Result, TRG extends Result> JavaRDD<Event> generateRelationEvents(final SparkSession spark,
final String graphPath,
final Class<SRC> sourceClass,
final Class<TRG> targetClass) {
// TODO Auto-generated method stub
return null;
}
private List<Event> generateSimpleEvents(final Collection<Result> children) {
final List<UpdateInfo<?>> list = new ArrayList<>();
@ -203,6 +196,35 @@ public class GenerateEventsApplication {
return list.stream().map(EventFactory::newBrokerEvent).collect(Collectors.toList());
}
private static <SRC extends Result, TRG extends OafEntity> JavaRDD<Event> generateRelationEvents(final SparkSession spark,
final String graphPath,
final Class<SRC> sourceClass,
final Class<TRG> targetClass) {
final Dataset<SRC> sources = readPath(spark, graphPath + "/" + sourceClass.getSimpleName().toLowerCase(), sourceClass)
.filter(r -> r.getDataInfo().getDeletedbyinference());
final Dataset<TRG> targets = readPath(spark, graphPath + "/" + sourceClass.getSimpleName().toLowerCase(), targetClass);
final Dataset<Relation> mergedRels = readPath(spark, graphPath + "/relation", Relation.class)
.filter(r -> r.getRelClass().equals(BrokerConstants.IS_MERGED_IN_CLASS));
final Dataset<Relation> rels = readPath(spark, graphPath + "/relation", Relation.class)
.filter(r -> !r.getRelClass().equals(BrokerConstants.IS_MERGED_IN_CLASS));
if (targetClass == Project.class) {
// TODO join using: generateProjectsEvents
} else if (targetClass == Software.class) {
// TODO join using: generateSoftwareEvents
} else if (targetClass == Publication.class) {
// TODO join using: generatePublicationRelatedEvents
} else if (targetClass == eu.dnetlib.dhp.schema.oaf.Dataset.class) {
// TODO join using: generateDatasetRelatedEvents
}
return null;
}
private List<Event> generateProjectsEvents(final Collection<Pair<Result, List<Project>>> childrenWithProjects) {
final List<UpdateInfo<?>> list = new ArrayList<>();

14
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedProjects/EnrichMissingProject.java
View File

@ -3,11 +3,13 @@ package eu.dnetlib.dhp.broker.oa.matchers.relatedProjects;
import java.util.Arrays;
import java.util.List;
import java.util.stream.Collectors;
import org.apache.commons.lang3.tuple.Pair;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher;
import eu.dnetlib.dhp.broker.oa.util.ConversionUtils;
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
import eu.dnetlib.dhp.schema.oaf.Project;
import eu.dnetlib.dhp.schema.oaf.Result;
@ -22,8 +24,16 @@ public class EnrichMissingProject
@Override
protected List<UpdateInfo<eu.dnetlib.broker.objects.Project>> findUpdates(final Pair<Result, List<Project>> source,
final Pair<Result, List<Project>> target) {
// TODO
return Arrays.asList();
if (source.getRight().isEmpty()) {
return Arrays.asList();
} else {
return target.getRight()
.stream()
.map(ConversionUtils::oafProjectToBrokerProject)
.map(p -> generateUpdateInfo(p, source, target))
.collect(Collectors.toList());
}
}
@Override

18
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedProjects/EnrichMoreProject.java
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@ -1,13 +1,15 @@
package eu.dnetlib.dhp.broker.oa.matchers.relatedProjects;
import java.util.Arrays;
import java.util.List;
import java.util.Set;
import java.util.stream.Collectors;
import org.apache.commons.lang3.tuple.Pair;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher;
import eu.dnetlib.dhp.broker.oa.util.ConversionUtils;
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
import eu.dnetlib.dhp.schema.oaf.Project;
import eu.dnetlib.dhp.schema.oaf.Result;
@ -21,8 +23,18 @@ public class EnrichMoreProject extends UpdateMatcher<Pair<Result, List<Project>>
@Override
protected List<UpdateInfo<eu.dnetlib.broker.objects.Project>> findUpdates(final Pair<Result, List<Project>> source,
final Pair<Result, List<Project>> target) {
// TODO
return Arrays.asList();
final Set<String> existingProjects = source.getRight()
.stream()
.map(Project::getId)
.collect(Collectors.toSet());
return target.getRight()
.stream()
.filter(p -> !existingProjects.contains(p.getId()))
.map(ConversionUtils::oafProjectToBrokerProject)
.map(p -> generateUpdateInfo(p, source, target))
.collect(Collectors.toList());
}
@Override

2
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedPublications/AbstractEnrichMissingPublication.java
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@ -39,7 +39,7 @@ public abstract class AbstractEnrichMissingPublication
.getRight()
.stream()
.filter(d -> !existingPublications.contains(d.getId()))
.map(ConversionUtils::oafPublicationToBrokerPublication)
.map(ConversionUtils::oafResultToBrokerPublication)
.map(i -> generateUpdateInfo(i, source, target))
.collect(Collectors.toList());

16
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMissingSoftware.java → dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedSoftware/EnrichMissingSoftware.java
View File

@ -1,13 +1,15 @@
package eu.dnetlib.dhp.broker.oa.matchers.simple;
package eu.dnetlib.dhp.broker.oa.matchers.relatedSoftware;
import java.util.Arrays;
import java.util.List;
import java.util.stream.Collectors;
import org.apache.commons.lang3.tuple.Pair;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher;
import eu.dnetlib.dhp.broker.oa.util.ConversionUtils;
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
import eu.dnetlib.dhp.schema.oaf.Result;
import eu.dnetlib.dhp.schema.oaf.Software;
@ -23,8 +25,16 @@ public class EnrichMissingSoftware
protected List<UpdateInfo<eu.dnetlib.broker.objects.Software>> findUpdates(
final Pair<Result, List<Software>> source,
final Pair<Result, List<Software>> target) {
// TODO
return Arrays.asList();
if (source.getRight().isEmpty()) {
return Arrays.asList();
} else {
return target.getRight()
.stream()
.map(ConversionUtils::oafSoftwareToBrokerSoftware)
.map(p -> generateUpdateInfo(p, source, target))
.collect(Collectors.toList());
}
}
@Override

20
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMoreSoftware.java → dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedSoftware/EnrichMoreSoftware.java
View File

@ -1,13 +1,15 @@
package eu.dnetlib.dhp.broker.oa.matchers.simple;
package eu.dnetlib.dhp.broker.oa.matchers.relatedSoftware;
import java.util.Arrays;
import java.util.List;
import java.util.Set;
import java.util.stream.Collectors;
import org.apache.commons.lang3.tuple.Pair;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher;
import eu.dnetlib.dhp.broker.oa.util.ConversionUtils;
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
import eu.dnetlib.dhp.schema.oaf.Result;
import eu.dnetlib.dhp.schema.oaf.Software;
@ -23,8 +25,18 @@ public class EnrichMoreSoftware
protected List<UpdateInfo<eu.dnetlib.broker.objects.Software>> findUpdates(
final Pair<Result, List<Software>> source,
final Pair<Result, List<Software>> target) {
// TODO
return Arrays.asList();
final Set<String> existingSoftwares = source.getRight()
.stream()
.map(Software::getId)
.collect(Collectors.toSet());
return target.getRight()
.stream()
.filter(p -> !existingSoftwares.contains(p.getId()))
.map(ConversionUtils::oafSoftwareToBrokerSoftware)
.map(p -> generateUpdateInfo(p, source, target))
.collect(Collectors.toList());
}
@Override

6
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMissingOpenAccess.java
View File

@ -28,16 +28,14 @@ public class EnrichMissingOpenAccess extends UpdateMatcher<Result, Instance> {
.filter(right -> right.equals(BrokerConstants.OPEN_ACCESS))
.count();
if (count > 0) {
return Arrays.asList();
}
if (count > 0) { return Arrays.asList(); }
return source
.getInstance()
.stream()
.filter(i -> i.getAccessright().getClassid().equals(BrokerConstants.OPEN_ACCESS))
.map(ConversionUtils::oafInstanceToBrokerInstances)
.flatMap(s -> s)
.flatMap(List::stream)
.map(i -> generateUpdateInfo(i, source, target))
.collect(Collectors.toList());
}

2
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMoreOpenAccess.java
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@ -34,7 +34,7 @@ public class EnrichMoreOpenAccess extends UpdateMatcher<Result, Instance> {
.stream()
.filter(i -> i.getAccessright().getClassid().equals(BrokerConstants.OPEN_ACCESS))
.map(ConversionUtils::oafInstanceToBrokerInstances)
.flatMap(s -> s)
.flatMap(List::stream)
.filter(i -> !urls.contains(i.getUrl()))
.map(i -> generateUpdateInfo(i, source, target))
.collect(Collectors.toList());

148
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/ConversionUtils.java
View File

@ -1,49 +1,155 @@
package eu.dnetlib.dhp.broker.oa.util;
import java.util.stream.Stream;
import java.util.ArrayList;
import java.util.List;
import java.util.stream.Collectors;
import org.apache.commons.lang3.StringUtils;
import org.apache.commons.lang3.tuple.Pair;
import org.dom4j.Document;
import org.dom4j.DocumentException;
import org.dom4j.DocumentHelper;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import eu.dnetlib.broker.objects.Instance;
import eu.dnetlib.broker.objects.Pid;
import eu.dnetlib.dhp.schema.oaf.Author;
import eu.dnetlib.dhp.schema.oaf.Dataset;
import eu.dnetlib.dhp.schema.oaf.ExternalReference;
import eu.dnetlib.dhp.schema.oaf.Field;
import eu.dnetlib.dhp.schema.oaf.Instance;
import eu.dnetlib.dhp.schema.oaf.Journal;
import eu.dnetlib.dhp.schema.oaf.KeyValue;
import eu.dnetlib.dhp.schema.oaf.Project;
import eu.dnetlib.dhp.schema.oaf.Publication;
import eu.dnetlib.dhp.schema.oaf.Result;
import eu.dnetlib.dhp.schema.oaf.Software;
import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
public class ConversionUtils {
public static Stream<Instance> oafInstanceToBrokerInstances(final eu.dnetlib.dhp.schema.oaf.Instance i) {
private static final Logger log = LoggerFactory.getLogger(ConversionUtils.class);
public static List<eu.dnetlib.broker.objects.Instance> oafInstanceToBrokerInstances(final Instance i) {
return i.getUrl().stream().map(url -> {
final Instance r = new Instance();
r.setUrl(url);
r.setInstancetype(i.getInstancetype().getClassid());
r.setLicense(BrokerConstants.OPEN_ACCESS);
r.setHostedby(i.getHostedby().getValue());
return r;
});
return new eu.dnetlib.broker.objects.Instance()
.setUrl(url)
.setInstancetype(i.getInstancetype().getClassid())
.setLicense(BrokerConstants.OPEN_ACCESS)
.setHostedby(i.getHostedby().getValue());
}).collect(Collectors.toList());
}
public static Pid oafPidToBrokerPid(final StructuredProperty sp) {
final Pid pid = new Pid();
pid.setValue(sp.getValue());
pid.setType(sp.getQualifier().getClassid());
return pid;
return sp != null ? new Pid()
.setValue(sp.getValue())
.setType(sp.getQualifier().getClassid()) : null;
}
public static final Pair<String, String> oafSubjectToPair(final StructuredProperty sp) {
return Pair.of(sp.getQualifier().getClassid(), sp.getValue());
return sp != null ? Pair.of(sp.getQualifier().getClassid(), sp.getValue()) : null;
}
public static final eu.dnetlib.broker.objects.Dataset oafDatasetToBrokerDataset(final Dataset d) {
final eu.dnetlib.broker.objects.Dataset res = new eu.dnetlib.broker.objects.Dataset();
// TODO
return d != null ? new eu.dnetlib.broker.objects.Dataset()
.setOriginalId(d.getOriginalId().get(0))
.setTitles(structPropList(d.getTitle()))
.setPids(d.getPid().stream().map(ConversionUtils::oafPidToBrokerPid).collect(Collectors.toList()))
.setInstances(d.getInstance().stream().map(ConversionUtils::oafInstanceToBrokerInstances).flatMap(List::stream).collect(Collectors.toList()))
.setCollectedFrom(d.getCollectedfrom().stream().map(KeyValue::getValue).collect(Collectors.toList()))
: null;
}
public static final eu.dnetlib.broker.objects.Publication oafResultToBrokerPublication(final Result result) {
return result != null ? new eu.dnetlib.broker.objects.Publication()
.setOriginalId(result.getOriginalId().get(0))
.setTitles(structPropList(result.getTitle()))
.setAbstracts(fieldList(result.getDescription()))
.setLanguage(result.getLanguage().getClassid())
.setSubjects(structPropList(result.getSubject()))
.setCreators(result.getAuthor().stream().map(Author::getFullname).collect(Collectors.toList()))
.setPublicationdate(result.getDateofcollection())
.setPublisher(fieldValue(result.getPublisher()))
.setEmbargoenddate(fieldValue(result.getEmbargoenddate()))
.setContributor(fieldList(result.getContributor()))
.setJournal(result instanceof Publication ? oafJournalToBrokerJournal(((Publication) result).getJournal()) : null)
.setCollectedFrom(result.getCollectedfrom().stream().map(KeyValue::getValue).collect(Collectors.toList()))
.setPids(result.getPid().stream().map(ConversionUtils::oafPidToBrokerPid).collect(Collectors.toList()))
.setInstances(result.getInstance().stream().map(ConversionUtils::oafInstanceToBrokerInstances).flatMap(List::stream).collect(Collectors.toList()))
.setExternalReferences(result.getExternalReference().stream().map(ConversionUtils::oafExtRefToBrokerExtRef).collect(Collectors.toList()))
: null;
}
private static eu.dnetlib.broker.objects.Journal oafJournalToBrokerJournal(final Journal journal) {
return journal != null ? new eu.dnetlib.broker.objects.Journal()
.setName(journal.getName())
.setIssn(journal.getIssnPrinted())
.setEissn(journal.getIssnOnline())
.setLissn(journal.getIssnLinking()) : null;
}
private static eu.dnetlib.broker.objects.ExternalReference oafExtRefToBrokerExtRef(final ExternalReference ref) {
return ref != null ? new eu.dnetlib.broker.objects.ExternalReference()
.setRefidentifier(ref.getRefidentifier())
.setSitename(ref.getSitename())
.setType(ref.getQualifier().getClassid())
.setUrl(ref.getUrl())
: null;
}
public static final eu.dnetlib.broker.objects.Project oafProjectToBrokerProject(final Project p) {
if (p == null) { return null; }
final eu.dnetlib.broker.objects.Project res = new eu.dnetlib.broker.objects.Project()
.setTitle(fieldValue(p.getTitle()))
.setAcronym(fieldValue(p.getAcronym()))
.setCode(fieldValue(p.getCode()));
final String ftree = fieldValue(p.getFundingtree());
if (StringUtils.isNotBlank(ftree)) {
try {
final Document fdoc = DocumentHelper.parseText(ftree);
res.setFunder(fdoc.valueOf("/fundingtree/funder/shortname"));
res.setJurisdiction(fdoc.valueOf("/fundingtree/funder/jurisdiction"));
res.setFundingProgram(fdoc.valueOf("//funding_level_0/name"));
} catch (final DocumentException e) {
log.error("Error in record " + p.getId() + ": invalid fundingtree: " + ftree);
}
}
return res;
}
public static final eu.dnetlib.broker.objects.Publication oafPublicationToBrokerPublication(final Publication d) {
final eu.dnetlib.broker.objects.Publication res = new eu.dnetlib.broker.objects.Publication();
// TODO
return res;
public static final eu.dnetlib.broker.objects.Software oafSoftwareToBrokerSoftware(final Software sw) {
return sw != null ? new eu.dnetlib.broker.objects.Software()
.setName(structPropValue(sw.getTitle()))
.setDescription(fieldValue(sw.getDescription()))
.setRepository(fieldValue(sw.getCodeRepositoryUrl()))
.setLandingPage(fieldValue(sw.getDocumentationUrl()))
: null;
}
private static String fieldValue(final Field<String> f) {
return f != null ? f.getValue() : null;
}
private static String fieldValue(final List<Field<String>> fl) {
return fl != null ? fl.stream().map(Field::getValue).filter(StringUtils::isNotBlank).findFirst().orElse(null) : null;
}
private static String structPropValue(final List<StructuredProperty> props) {
return props != null ? props.stream().map(StructuredProperty::getValue).filter(StringUtils::isNotBlank).findFirst().orElse(null) : null;
}
private static List<String> fieldList(final List<Field<String>> fl) {
return fl != null ? fl.stream().map(Field::getValue).filter(StringUtils::isNotBlank).collect(Collectors.toList())
: new ArrayList<>();
}
private static List<String> structPropList(final List<StructuredProperty> props) {
return props != null ? props.stream().map(StructuredProperty::getValue).filter(StringUtils::isNotBlank).collect(Collectors.toList())
: new ArrayList<>();
}
}

29
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/UpdateInfo.java
View File

@ -1,12 +1,16 @@
package eu.dnetlib.dhp.broker.oa.util;
import java.util.List;
import java.util.function.BiConsumer;
import java.util.function.Function;
import eu.dnetlib.broker.objects.OpenAireEventPayload;
import eu.dnetlib.broker.objects.Provenance;
import eu.dnetlib.broker.objects.Publication;
import eu.dnetlib.dhp.broker.model.Topic;
import eu.dnetlib.dhp.schema.oaf.Instance;
import eu.dnetlib.dhp.schema.oaf.KeyValue;
import eu.dnetlib.dhp.schema.oaf.Result;
public final class UpdateInfo<T> {
@ -66,12 +70,29 @@ public final class UpdateInfo<T> {
return trust;
}
public void compileHighlight(final OpenAireEventPayload payload) {
compileHighlight.accept(payload.getHighlight(), getHighlightValue());
}
public String getHighlightValueAsString() {
return highlightToString.apply(getHighlightValue());
}
public OpenAireEventPayload asBrokerPayload() {
final Publication p = ConversionUtils.oafResultToBrokerPublication(getSource());
compileHighlight.accept(p, getHighlightValue());
final Publication hl = new Publication();
compileHighlight.accept(hl, getHighlightValue());
final String provId = getSource().getOriginalId().stream().findFirst().orElse(null);
final String provRepo = getSource().getCollectedfrom().stream().map(KeyValue::getValue).findFirst().orElse(null);
final String provUrl = getSource().getInstance().stream().map(Instance::getUrl).flatMap(List::stream).findFirst().orElse(null);;
final Provenance provenance = new Provenance().setId(provId).setRepositoryName(provRepo).setUrl(provUrl);
return new OpenAireEventPayload()
.setPublication(p)
.setHighlight(hl)
.setTrust(trust)
.setProvenance(provenance);
}
}

8
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/workflow.xml
View File

@ -21,6 +21,10 @@
<name>hiveJdbcUrl</name>
<description>hive server jdbc url</description>
</property>
<property>
<name>hive_timeout</name>
<description>the time period, in seconds, after which Hive fails a transaction if a Hive client has not sent a hearbeat. The default value is 300 seconds.</description>
</property>
</parameters>
<global>
@ -31,6 +35,10 @@
<name>hive.metastore.uris</name>
<value>${hiveMetastoreUris}</value>
</property>
<property>
<name>hive.txn.timeout</name>
<value>${hive_timeout}</value>
</property>
</configuration>
</global>