Sandro La Bruzzo
507e42102a
added pdb to oaf class
2021-06-21 09:36:40 +02:00
Sandro La Bruzzo
4fe7b75644
renamed packages
2021-06-18 16:41:24 +02:00
Sandro La Bruzzo
3990165d05
changed typologies of unresolved relation
2021-06-18 11:43:59 +02:00
Sandro La Bruzzo
3100166d29
Merge remote-tracking branch 'origin/stable_ids' into stable_id_scholexplorer
2021-06-16 16:22:16 +02:00
Claudio Atzori
74833d04f1
Merge branch 'pids_beta' of https://code-repo.d4science.org/antonis.lempesis/dnet-hadoop into stable_ids
2021-06-16 15:54:18 +02:00
Claudio Atzori
7243a40c88
code formatting
2021-06-16 15:03:03 +02:00
Sandro La Bruzzo
dfcf78cf24
removed wrong code
2021-06-16 14:57:42 +02:00
Sandro La Bruzzo
cc0f2b11fb
Implemented mapping from pubmed baseline to OAF
2021-06-16 14:56:24 +02:00
Miriam Baglioni
1c47c0d786
modified the number of executors trying to avoid OOM exception
2021-06-15 21:05:39 +02:00
Miriam Baglioni
7deac55138
added one option for resume from in the wf
2021-06-15 18:38:20 +02:00
Antonis Lempesis
f7c0b80e35
storing result_instance as parquet
2021-06-15 14:45:48 +03:00
Miriam Baglioni
66e7ef892f
changed the parameter name
2021-06-15 11:08:54 +02:00
Miriam Baglioni
4f47ad0891
no need to rename the folders, just write in overwrite mode, so I changed the name of the output folder
2021-06-15 09:28:31 +02:00
Miriam Baglioni
9f9dd00b94
refactoring
2021-06-15 09:24:46 +02:00
Miriam Baglioni
63d74ee379
refactoring
2021-06-15 09:24:11 +02:00
Miriam Baglioni
6ebc236657
added needed property: outputPath
2021-06-15 09:23:24 +02:00
Miriam Baglioni
f7379255b6
changed the workflow to extract info from the dump
2021-06-15 09:22:54 +02:00
Miriam Baglioni
d6e21bb6ea
creates the crossref dataset used for doiboost together with unpacking part from tar
2021-06-14 17:27:19 +02:00
Miriam Baglioni
4da141bd7c
Merge branch 'stable_ids' of https://code-repo.d4science.org/D-Net/dnet-hadoop into stable_ids
2021-06-14 13:41:02 +02:00
Miriam Baglioni
ce0cfd79e0
creates the crossref dataset used for doiboost
2021-06-14 13:40:19 +02:00
Miriam Baglioni
93efe4de82
split the construction of crossref dataset in two parts. This one just unpacks the tar entries
2021-06-14 13:39:40 +02:00
Michele Artini
ada063ce70
fixed a problem with empty mdstore list (2)
2021-06-14 12:04:47 +02:00
Michele Artini
83132ee99a
fixed a problem with empty mdstore list
2021-06-14 11:57:00 +02:00
Miriam Baglioni
cf360d7c97
Merge branch 'stable_ids' of https://code-repo.d4science.org/D-Net/dnet-hadoop into stable_ids
2021-06-14 10:19:49 +02:00
Miriam Baglioni
8873e6b6d1
workflow and parameter
2021-06-14 10:15:57 +02:00
Miriam Baglioni
0f1acdf6b6
workflow and parameter
2021-06-14 10:08:55 +02:00
Sandro La Bruzzo
aeb8132627
Merged branch stable_ids
2021-06-14 10:07:29 +02:00
Sandro La Bruzzo
efbea1e01a
minor fix
2021-06-14 09:45:14 +02:00
Miriam Baglioni
75780fc636
extraction of the tar for the dump of crossref, and creation of the dataset
2021-06-14 09:45:07 +02:00
Claudio Atzori
2039bb9f5f
orcid / orcid_pending cleaning backported from master branch
2021-06-14 09:40:50 +02:00
Claudio Atzori
dd19c4ac5a
Merge pull request 'import_new_mdstores' ( #112 ) from import_new_mdstores into stable_ids
...
Reviewed-on: #112
2021-06-14 09:23:55 +02:00
Claudio Atzori
e9e86a237d
Merge branch 'stable_ids' of https://code-repo.d4science.org/D-Net/dnet-hadoop into stable_ids
2021-06-11 17:00:02 +02:00
Claudio Atzori
10bd6ca194
depending on dhp-schemas:2.5.12 (release)
2021-06-11 16:59:56 +02:00
Claudio Atzori
a900bfb874
delegating the date parsing to https://github.com/sisyphsu/dateparser
2021-06-11 16:53:01 +02:00
Sandro La Bruzzo
dd997c49e0
fix wrong relation id
...
fix date thai ticket #6791
2021-06-10 14:47:18 +02:00
Antonis Lempesis
d413b24611
added instances, orgs for monitor, totalcost for projects, apcs
2021-06-10 02:35:46 +03:00
Claudio Atzori
741077dbca
Merge pull request 'Fix in Affiliation Propagation' ( #113 ) from miriam.baglioni/dnet-hadoop:master into stable_ids
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Reviewed-on: #113
2021-06-09 18:42:42 +02:00
Miriam Baglioni
32b0c27217
Aggiornare 'dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/resulttoorganizationfrominstrepo/PrepareResultInstRepoAssociation.java'
...
fix in SQL query: while writing the blacklist constraint it used d.id to indicate the datasource id, but no alias for the datasource was defined. So I removed the alias
2021-06-09 18:36:11 +02:00
Sandro La Bruzzo
0d1f37302f
Merge branch 'stable_ids' of code-repo.d4science.org:D-Net/dnet-hadoop into stable_id_scholexplorer
2021-06-09 09:35:16 +02:00
Miriam Baglioni
dc07f1079b
added check in case the author set to be enriched is null
2021-06-08 12:06:10 +02:00
Miriam Baglioni
8d2e086e48
changes to avoid reassignment to val
2021-06-07 17:50:37 +02:00
Miriam Baglioni
f33521d338
Aggiornare 'dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcid/SparkConvertORCIDToOAF.scala'
...
to be able to replace the aboject assigned to author val has been replaced by var
2021-06-07 17:27:07 +02:00
Miriam Baglioni
bc12e9819e
Aggiornare 'dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcid/SparkConvertORCIDToOAF.scala'
...
The change is to fix the issue that arises when the same work appears more than once on the same ORCID profile. The change avoid to replicate the association doi -> author when the orcid id is already associated to the doi.
2021-06-07 16:37:01 +02:00
Sandro La Bruzzo
0cdb7ccdaa
added inverse relations to datacite mapping
2021-06-04 15:10:20 +02:00
Sandro La Bruzzo
5b724d9972
added relations to datacite mapping
2021-06-04 10:14:22 +02:00
Sandro La Bruzzo
e57294ac99
implemented changes on PUBMed dataflow
2021-06-03 10:52:09 +02:00
Michele Artini
ede2749822
orcid pid type
2021-06-01 12:42:43 +02:00
Michele Artini
f0fbfdcfae
Merge branch 'stable_ids' into import_new_mdstores
2021-06-01 12:03:00 +02:00
Michele Artini
e950750262
add nodes to import hdfs mdstores
2021-06-01 10:48:50 +02:00
Michele Artini
03a510859a
removed coalesce(1)
2021-05-31 14:10:51 +02:00
Sandro La Bruzzo
Claudio Atzori
Miriam Baglioni
Antonis Lempesis
Michele Artini