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565 Commits

Author SHA1 Message Date
Claudio Atzori 0977baf41d contents mapped from the stores with 'claim' interpretation will not change their identifier along their way towards the graph 2021-07-19 17:43:52 +02:00
Claudio Atzori 5e5f65a3c3 contents mapped from the stores with 'claim' interpretation will not change their identifier along their way towards the graph 2021-07-19 15:56:55 +02:00
Miriam Baglioni 774cdb190e changes to mirror the last dump of the graph with the ols data model. 2021-07-13 18:57:24 +02:00
Miriam Baglioni 886617afd0 One result linked to more than on project is saved just once 2021-07-13 18:15:35 +02:00
Miriam Baglioni 320cf02d96 Changed the way to find results linked to projects. We verify to actually have the project on the graph before selecting the result 2021-07-13 18:13:32 +02:00
Miriam Baglioni 970b387b8d modification to allow dump of a single community 2021-07-13 18:08:10 +02:00
Miriam Baglioni eae10c5894 modification to allow the dump for a single community 2021-07-13 18:07:25 +02:00
Miriam Baglioni d70f8c96fd funding contains and not starts with h2020 2021-07-13 17:34:53 +02:00
Miriam Baglioni 5e38c7f42d dumping only communities with status all 2021-07-13 17:32:38 +02:00
Miriam Baglioni 618d2de2da minor changes and refactoring 2021-07-13 17:10:02 +02:00
Miriam Baglioni 084b4ef999 added the creation of the openaireId from funder and grant number if the element is not present in the context profile 2021-07-13 17:07:46 +02:00
Miriam Baglioni 8f322a73cb change because of the renaming of originalId in acronym 2021-07-13 16:22:58 +02:00
Miriam Baglioni 72397ea1ba Added fix for community of arbitrary name length 2021-07-13 16:18:35 +02:00
Miriam Baglioni 5295d10691 added check not to dump deletedByInference entities 2021-07-13 16:11:46 +02:00
Miriam Baglioni e9a17ec899 added check to verify not to add void APC 2021-07-13 15:53:35 +02:00
Miriam Baglioni 39b1a6edf6 added test class for the selection of valid relations and description 2021-07-13 15:23:09 +02:00
Miriam Baglioni 9a58f1b93d added logic to select only the valid relations: those not deletedbyinference and having both part of the relation as entities in the graph 2021-07-13 15:20:39 +02:00
Miriam Baglioni 13c66e16be changed logic to split for communities 2021-07-13 15:15:27 +02:00
Miriam Baglioni 6410ab71d8 added APC in the dump and test method 2021-07-13 15:13:58 +02:00
Miriam Baglioni 69fd40fd30 modified code to split the Croatian funder 2021-07-13 14:35:26 +02:00
Miriam Baglioni 86e50f7311 modified code to split the Croatian funder 2021-07-13 14:31:45 +02:00
Miriam Baglioni da88c850c6 changed the logic to verify if a community is contained in the list of context of a result 2021-07-13 14:22:44 +02:00
Miriam Baglioni 2f66fedfec changed the logic to verify if a community is contained in the list of context of a result 2021-07-13 14:22:23 +02:00
Sandro La Bruzzo bbe8193930 merged stable ids 2021-07-12 17:00:43 +02:00
Claudio Atzori b7b8e0986e [raw_all] The claim merge procedure includes the claimed contexts in the merged result 2021-07-08 10:42:31 +02:00
Claudio Atzori fdcff42e46 [raw_all] Aggregator graph creation merges claims (updates) with the corresponding entity 2021-07-07 19:01:59 +02:00
Claudio Atzori 32bdfdccbc [raw_all] Aggregator graph creation merges claims (updates) with the corresponding entity 2021-07-07 11:08:27 +02:00
Claudio Atzori f580cb77e1 added mapping for claim relation 'resultResult_publicationDataset_isRelatedTo' (present on BETA) 2021-07-06 21:11:11 +02:00
Sandro La Bruzzo ad50415167 Merge remote-tracking branch 'origin/stable_ids' into stable_id_scholexplorer 2021-06-24 17:20:50 +02:00
Claudio Atzori 50fc5a64a0 [raw_all] Aggregator graph creation merges claims (updates) with the corresponding entity 2021-06-23 11:49:42 +02:00
Sandro La Bruzzo 3100166d29 Merge remote-tracking branch 'origin/stable_ids' into stable_id_scholexplorer 2021-06-16 16:22:16 +02:00
Claudio Atzori 7243a40c88 code formatting 2021-06-16 15:03:03 +02:00
Michele Artini ada063ce70 fixed a problem with empty mdstore list (2) 2021-06-14 12:04:47 +02:00
Michele Artini 83132ee99a fixed a problem with empty mdstore list 2021-06-14 11:57:00 +02:00
Sandro La Bruzzo aeb8132627 Merged branch stable_ids 2021-06-14 10:07:29 +02:00
Claudio Atzori 2039bb9f5f orcid / orcid_pending cleaning backported from master branch 2021-06-14 09:40:50 +02:00
Sandro La Bruzzo 5b724d9972 added relations to datacite mapping 2021-06-04 10:14:22 +02:00
Michele Artini ede2749822 orcid pid type 2021-06-01 12:42:43 +02:00
Michele Artini f0fbfdcfae Merge branch 'stable_ids' into import_new_mdstores 2021-06-01 12:03:00 +02:00
Michele Artini 03a510859a removed coalesce(1) 2021-05-31 14:10:51 +02:00
Michele Artini e9f2b6037c patch of mdstore records 2021-05-31 11:36:26 +02:00
Michele Artini ad56a44fda save as gzipped sequence file 2021-05-28 14:45:39 +02:00
Michele Artini 4fa5671d16 first implementation of Hdfs Mdstores Importer 2021-05-27 16:22:07 +02:00
Claudio Atzori 5e4b91d9ef more pervasive use of constants from ModelConstants, especially for ORCID 2021-05-26 18:20:23 +02:00
Claudio Atzori 9d725efdc1 reverted implementation of the mdstore client 2021-05-20 18:26:09 +02:00
Claudio Atzori ae5c28e54f code formatting 2021-05-20 16:13:06 +02:00
Claudio Atzori 232dce83db fixes #6701: xpath for titles to support both datacite and Guidelines v4 mapping 2021-05-20 14:41:15 +02:00
Claudio Atzori 23b8883ab1 applied intellij code cleanup 2021-05-14 10:58:12 +02:00
Claudio Atzori d4c3476152 mapping datasource.journal only when an issn is available, null otherwhise 2021-05-11 11:08:54 +02:00
Claudio Atzori d1cbee8413 imported methods from CleaningFunctions, defined in GraphCleaningFunctions 2021-05-10 16:43:39 +02:00
Claudio Atzori dccaf173cf fixed mapping applied to ODF records. Added unit test to verify the mapping for OpenTrials 2021-05-05 16:36:15 +02:00
Claudio Atzori 923d19ea8e mdstore read lock/unlock when bulk copying records from mongodb to hdfs 2021-05-04 18:06:21 +02:00
Claudio Atzori 5afa7d3e0c core utilities in dhp-common moved in external module dhp-schemas 2021-04-27 15:44:01 +02:00
Claudio Atzori c25238480c making ODF record parsing namespace unaware (#6629) 2021-04-23 17:34:57 +02:00
miconis 0393cdce42 addition of alternative names in export queries 2021-04-20 12:45:21 +02:00
Claudio Atzori d1ca025b0b [cleaning] remiving authors without fullname or providing 'deactivated' keyword. Removing test test titles 2021-04-13 14:32:41 +02:00
miconis bf685d849f addition of pids in the query for the export of openorgs for the provision, addition of ec_fields in the openorgs model 2021-04-07 14:27:43 +02:00
miconis eaaefb8b4c implementation of the procedure to reuse content of different dbs when creating the raw graph 2021-04-06 14:35:51 +02:00
miconis c39c82dfe9 modification of the jobs for the integration of openorgs in the provision, dedup records are no more created by merging but simply taking results of openorgs portal 2021-04-06 14:31:00 +02:00
Claudio Atzori 7941d7be29 WIP: using common definitions from ModelConstants 2021-03-31 18:33:57 +02:00
Claudio Atzori 72ce741ea6 WIP: using common definitions from ModelConstants 2021-03-31 17:07:13 +02:00
miconis 2709d08fc2 Merge branch 'stable_ids' into openorgswf 2021-03-29 16:39:07 +02:00
miconis 2355cc4e9b minor changes and bug fix 2021-03-29 10:07:12 +02:00
miconis 28c1cdd132 merged stable_ids into openorgswf 2021-03-25 10:44:49 +01:00
miconis 348b0ef921 bug fix, implementation of the workflow for the creation of raw_organizations (openorgs dedup), addition of the pid lists to the openorgs postgres db 2021-03-24 15:51:27 +01:00
Sandro La Bruzzo c73072079d fix conflicts 2021-03-22 16:36:31 +01:00
Claudio Atzori 5a043e95ea code formatting 2021-03-19 11:37:27 +01:00
Claudio Atzori a4e82a65aa integrated filter applied when merging BETA & PROD graphs to rule our records from Datacite 2021-03-19 11:34:44 +01:00
Claudio Atzori 8257f9a2bc result.pid: adjusted the mapping applied to the contents from the aggregator 2021-03-17 12:45:38 +01:00
Claudio Atzori 640b885706 added instance.alternativeIdentifiers to the graph model, adjusted the mapping applied to the contents from the aggregator 2021-03-16 14:19:32 +01:00
Claudio Atzori 01630f638d IdentifierFactory implementation based on the list of datasources authoritative for a given pid type 2021-03-09 17:11:50 +01:00
Claudio Atzori 59532b0919 [#6281 Provenance of product PIDs] Added PIDs to the Instance type; extended mapping for OAF/ODF records 2021-03-09 11:14:45 +01:00
Claudio Atzori d525785497 [#6282 open access status in the Graph] Result.Instance.accessRight defined with dedicated data type that includes the open access color. 2021-03-09 11:12:55 +01:00
Claudio Atzori f468c7f0d7 merged from master 2021-03-09 09:12:41 +01:00
Claudio Atzori 8d2bb24512 merged from master 2021-03-08 15:44:34 +01:00
miconis 1a85020572 bug fix in graph-mapper, changes in the implementation of the openorgs wf to create relations and populate openorgs db 2021-02-26 10:19:28 +01:00
Claudio Atzori b830e33392 mdstore collector plugin 2021-02-25 12:30:30 +01:00
Claudio Atzori fc3fa5e343 implemented mdstore collector plugin 2021-02-24 15:07:24 +01:00
miconis 4b2124a18e implementation of the openorgs wfs, implementation of the raw_all wf to migrate openorgs db entities 2021-02-10 11:51:50 +01:00
Sandro La Bruzzo 686e7b507c Merge branch 'hadoop_aggregator' of code-repo.d4science.org:D-Net/dnet-hadoop into aggregation_on_hadoop 2021-01-28 10:02:13 +01:00
Sandro La Bruzzo 98b9498b57 Removed old messaging system not quite used from collection and Transformation workflow 
code refactor
 2021-01-28 09:51:17 +01:00
Sandro La Bruzzo 150a617bd1 Merge pull request 'aggregation_on_hadoop' (#90) from sandro.labruzzo/dnet-hadoop:aggregation_on_hadoop into hadoop_aggregator 
Wonderfull code... You're the Best Sandro
 2021-01-26 16:00:47 +01:00
Claudio Atzori 885e0dd926 [Cleaning] filter authors not providing word characters in the fullname 2021-01-26 09:48:53 +01:00
Claudio Atzori 2890511613 [Cleaning] normalise missing Result.country 2021-01-26 09:41:44 +01:00
Claudio Atzori 4eb9ed35b1 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2021-01-25 18:12:24 +01:00
Claudio Atzori cd379eb5e3 [Cleaning] trying to avoid NPEs, this time by ruling out authors without a defined fullname 2021-01-25 18:11:49 +01:00
Alessia Bardi 505477f36f format code 2021-01-25 18:02:49 +01:00
Alessia Bardi ded6ed8d7d no ',' author, if there are no author in ODF records 2021-01-25 17:57:51 +01:00
Claudio Atzori 3465c8ccee [Cleaning] trying to avoid NPEs 2021-01-25 16:54:53 +01:00
Sandro La Bruzzo a54848a59c Moved Vocabulary stuff to common module 2021-01-25 15:43:04 +01:00
Claudio Atzori 07a0ccfc96 [Cleaning] trying to avoid NPEs 2021-01-25 13:36:01 +01:00
Claudio Atzori 34d653de41 [Cleaning] updated cleaning rule for DOIs 2021-01-22 14:16:33 +01:00
Claudio Atzori 26e9d55c13 code formatting 2021-01-05 09:59:26 +01:00
Claudio Atzori 7185158942 ignore missing properties 2020-12-29 11:06:28 +01:00
Claudio Atzori 28460c2cd1 using com.fasterxml.jackson.databind.ObjectMapper instead of org.codehaus.jackson.map.ObjectMapper 2020-12-23 16:59:52 +01:00
Claudio Atzori 723b01f9e9 trivial: the less magic numbers and values around, the better 2020-12-23 12:22:48 +01:00
Claudio Atzori 6cb0dc3f43 extended OCRID cleaning procedure 2020-12-21 11:40:17 +01:00
Michele Artini 991e675dc6 validation in claim rels 2020-12-14 15:41:25 +01:00
Claudio Atzori 12e2f930c8 resolved conflicts 2020-12-10 10:57:39 +01:00
Claudio Atzori 4705144918 Merge pull request 'rel_project_validation' (#69) from rel_project_validation into master 
LGTM
 2020-12-09 19:01:20 +01:00
Claudio Atzori ada21ad920 Merge pull request 'dump of the results related to at least one project' (#61) from miriam.baglioni/dnet-hadoop:dump into master 
LGTM
 2020-12-09 17:22:56 +01:00
Michele Artini 1bc9adc10d default trust for validated rels 2020-12-09 16:18:37 +01:00
Michele Artini 5f21a356fd reindent 2020-12-09 11:24:30 +01:00
Michele Artini 370a5e650b validation attributes in resultProject relations 2020-12-09 11:18:26 +01:00
Claudio Atzori a104a632df cleanup 2020-12-04 16:32:47 +01:00
Miriam Baglioni 5fb65ffc4a merge branch with master 2020-12-03 11:24:35 +01:00
Claudio Atzori cfb55effd9 code formatting 2020-12-02 11:23:49 +01:00
Claudio Atzori 57f448b7a4 graph cleaning workflow separate orcid_pending from orcid, depending on the author pid provenance 2020-12-02 10:44:05 +01:00
Claudio Atzori 2c407e775e GenerateEntitiesApplication can be configured to hash the id value or not 2020-11-30 12:00:38 +01:00
Claudio Atzori e731a7658d cleaning texts to remove tab characters too 2020-11-27 09:00:04 +01:00
Claudio Atzori c1b9a4045a grouping of records will be performed by the dedup workflow 2020-11-26 10:59:10 +01:00
Miriam Baglioni 124591a7f3 refactoring 2020-11-25 18:23:28 +01:00
Miriam Baglioni 1df94b85b4 changed because of #61 (comment) 2020-11-25 17:57:43 +01:00
Miriam Baglioni 6750e33d69 merge branch with master 2020-11-25 14:09:01 +01:00
Miriam Baglioni b2c455f883 added java doc 2020-11-25 14:08:09 +01:00
Miriam Baglioni e758d5d9b4 refactoring 2020-11-25 13:46:39 +01:00
Miriam Baglioni 87a9f616ae refactoring and addition of the funder nsp first part as nome for the dump insteasd of the whole nsp 2020-11-25 13:45:41 +01:00
Miriam Baglioni 21ce175d17 added FilterFunction specification if filter operation 2020-11-25 13:42:31 +01:00
Miriam Baglioni b37b9352d7 added constant value for semantic relationship between projects and results 2020-11-25 13:41:08 +01:00
Claudio Atzori 36173c13a5 reverted filters in the clening process 2020-11-25 10:24:42 +01:00
Claudio Atzori eeebd5a920 Cleanig workflow: remove newlines from titles, descriptions, subjects 2020-11-24 18:40:25 +01:00
Claudio Atzori e1a1bb3ee4 moved class CleaningFunctions in the correct package. Remove newlines from titles, descriptions, subjects 2020-11-24 18:34:03 +01:00
Miriam Baglioni 72bb0fe360 changed directory name 2020-11-24 16:47:07 +01:00
Miriam Baglioni b9b6bdb2e6 fixing issue on previous implementation 2020-11-24 14:44:53 +01:00
Miriam Baglioni 7e940f1991 changed to consider the modification for the specification of the type of dump 2020-11-24 14:43:34 +01:00
Miriam Baglioni 62928ef7a5 changed to save the communities_infrastructures information as the other entity dumps: in a json.gz file 2020-11-24 14:42:41 +01:00
Claudio Atzori 33bae02451 reverted behaviour of the cleaning workflow: grouping entities by ID will be managed differently 2020-11-24 14:42:33 +01:00
Miriam Baglioni 3319440c53 changed the direction of the relation between projects and result considered to select the results linked to projects 2020-11-24 14:41:09 +01:00
Miriam Baglioni 00c377dac2 added specification of MapFunction types in map 2020-11-24 14:40:22 +01:00
Miriam Baglioni 44db258dc4 added enumerated for the dump type 2020-11-24 14:38:06 +01:00
Miriam Baglioni 1832708c42 modified boolean variable with string one whcih specify the type of dump we are performing: complete, community or funder 2020-11-24 14:37:36 +01:00
Miriam Baglioni 259c67ce36 fixed issue in path name 2020-11-20 12:32:23 +01:00
Miriam Baglioni 0a9db67eec - 2020-11-20 12:21:33 +01:00
Miriam Baglioni 24c56fa7a3 new logic and workflow for dump of results with link to projects. In this implementation the result match the model of the communityresult. 2020-11-19 19:15:39 +01:00
Claudio Atzori fcbb05eb21 cleanup 2020-11-19 15:14:33 +01:00
Claudio Atzori 3f34757c63 merged from master 2020-11-19 14:34:54 +01:00
Miriam Baglioni fafb688887 - 2020-11-18 18:56:48 +01:00
Miriam Baglioni 906db690d2 - 2020-11-18 17:43:08 +01:00
Miriam Baglioni 5402062ff5 changed parameter file with the ono associated to the job 2020-11-18 16:58:20 +01:00
Miriam Baglioni a172a37ad1 fixed typo 2020-11-18 16:55:07 +01:00
Miriam Baglioni 46ba3793f6 code, workflow and parameters for the dump of the results associated to funders 2020-11-18 16:47:31 +01:00
Alessia Bardi 10e673660f Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-11-18 10:01:23 +01:00
Alessia Bardi be7b310cef rel semantcis ignore case 2020-11-18 10:01:20 +01:00
Michele Artini 33da2e3d6c xpaths for dateOfCollection and dateOfTransformation 2020-11-18 09:26:20 +01:00
Alessia Bardi 8f87020a50 #56: map relevantDates from aggregated ODF records 2020-11-17 18:42:09 +01:00
Claudio Atzori cfc01f136e PID filtering based on a blacklist 2020-11-17 12:27:06 +01:00
Claudio Atzori 6ab1ce53c9 fixed condition in result pid cleaning; cleanup 2020-11-16 10:09:17 +01:00
Claudio Atzori 768bc5304c Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-11-13 15:40:34 +01:00
Claudio Atzori 93f7b7974f Merge pull request 'trust truncated to 3 decimals' (#24) from trunc_trust into master 
LGTM
 2020-11-13 15:40:02 +01:00
Claudio Atzori 528231a287 grouping graph entities by id turned out to be an easy extension for the already existing cleaning workflow 2020-11-13 15:37:48 +01:00