Commit Graph

430 Commits

Author SHA1 Message Date
Sandro La Bruzzo 1d420eedb4 added generation of EBI Dataset 2020-07-02 12:37:43 +02:00
Claudio Atzori 6f5771c1c9 sets author.rank when null 2020-06-25 14:06:21 +02:00
Claudio Atzori 7df2712824 Merge branch 'provision_indexing' 2020-06-25 12:22:41 +02:00
Michele Artini abcbebcbb4 fixed generation of ids 2020-06-25 09:50:46 +02:00
Michele Artini 77d2a1b1c4 params to choose sql queries for beta or production 2020-06-25 09:28:13 +02:00
Claudio Atzori 0e723d378b added default from vocab for missing instance.refereed; remove spurious prefixes from orcid values; WIP: prepare relation job 2020-06-24 18:34:42 +02:00
Miriam Baglioni afa19b0c84 changed the way to PUT the files to the rest API 2020-06-22 17:20:07 +02:00
Miriam Baglioni df80ae5c1b merge branch with fork master 2020-06-22 10:51:23 +02:00
Miriam Baglioni 185facb8e5 change the deprecated DefaultHttpClient with the CLoseableHttpClient 2020-06-22 10:49:10 +02:00
Claudio Atzori 7d416f08d8 graph cleaning workflow: set hostedby to unknown repository when defined as NULL 2020-06-22 09:50:43 +02:00
Miriam Baglioni 669a509430 - 2020-06-19 17:39:46 +02:00
Claudio Atzori d0ac7514b2 cleaning workflow to include cleaning of default values 2020-06-18 19:37:25 +02:00
Miriam Baglioni 44a12d244f - 2020-06-18 18:38:54 +02:00
Miriam Baglioni fb80353018 - 2020-06-18 14:21:36 +02:00
Miriam Baglioni 65bf312360 merge branch with fork master 2020-06-18 11:35:27 +02:00
Miriam Baglioni f9578312b5 - 2020-06-18 11:34:15 +02:00
Miriam Baglioni 3233b01089 changes due to adding all the result type under Result 2020-06-18 11:22:58 +02:00
Miriam Baglioni bc8611a95a added new resources for testing 2020-06-18 11:19:20 +02:00
Sandro La Bruzzo 9bf67f5de1 resolved conflicts 2020-06-17 09:15:43 +02:00
Sandro La Bruzzo 1d4275acc4 implemented first version of exportation of Scholexplorer into ActionSet 2020-06-17 09:10:38 +02:00
Claudio Atzori 5441f01586 Merge pull request 'missing landingPage urls in instances' (#22) from instances-with-landing-page into master
Looks good, thanks!
2020-06-16 15:32:44 +02:00
Claudio Atzori 2a4f65795f WIP: graph cleaner implementation 2020-06-15 18:32:24 +02:00
Claudio Atzori c15c8c0ad0 map datasource identities (including piwik ids) as original IDs 2020-06-15 16:07:30 +02:00
Miriam Baglioni 9dd3ef22c5 merge branch with fork master 2020-06-15 11:23:26 +02:00
Miriam Baglioni f96ca900e1 fixed issues while running on cluster 2020-06-15 11:12:14 +02:00
Claudio Atzori 0d52816244 WIP: graph cleaner implementation 2020-06-13 13:06:04 +02:00
Claudio Atzori bed65a1be6 WIP: graph cleaner implementation 2020-06-12 18:25:47 +02:00
Claudio Atzori 463489f59f code formatting 2020-06-12 12:03:25 +02:00
Claudio Atzori 4bcad1c9c3 Merge branch 'graph_cleaning' 2020-06-12 11:40:25 +02:00
Claudio Atzori cdb1956fe9 WIP: graph cleaner implementation 2020-06-12 11:36:59 +02:00
Alessia Bardi b347499745 do not use deprecated subreltype 2020-06-12 10:58:02 +02:00
Claudio Atzori 97b1c4057c WIP: graph cleaner implementation 2020-06-12 10:45:18 +02:00
Claudio Atzori ba8a024af9 avoid NPEs merging titles 2020-06-12 10:45:11 +02:00
Miriam Baglioni a01800224c - 2020-06-11 13:02:04 +02:00
Miriam Baglioni 356dd582a3 map construction moved in class 2020-06-11 12:59:22 +02:00
Michele Artini a41e0cb648 missing landingPage urls in instances 2020-06-11 12:28:34 +02:00
Michele Artini 99f88e1cb8 fixed generation entities from claims 2020-06-11 10:51:57 +02:00
Miriam Baglioni db27663750 - 2020-06-11 10:49:01 +02:00
Claudio Atzori d1d92c4d8c fixed integration of claims in the graph 2020-06-11 10:12:00 +02:00
Claudio Atzori 953da4a427 Merge branch 'master' into graph_cleaning 2020-06-10 21:36:56 +02:00
Claudio Atzori f1bce64391 WIP: graph cleaner implementation 2020-06-10 21:36:31 +02:00
Michele Artini 7177a32d75 import of invisible stores 2020-06-10 10:04:00 +02:00
Claudio Atzori a2fdf85ba1 WIP: graph cleaner implementation 2020-06-09 19:52:53 +02:00
Claudio Atzori d9f33582c5 WIP: graph cleaner implementation 2020-06-09 17:20:40 +02:00
Miriam Baglioni 6bbe27587f new classes to execute the dump for products associated to community, enrich each result with project information and assign the result to each community it belongs to 2020-06-09 15:39:03 +02:00
Miriam Baglioni 5121cbaf6a new classes for external dump. Only classes functional to dump products 2020-06-09 15:37:46 +02:00
Claudio Atzori b2349659cf WIP: graph property fixing implementation 2020-06-05 18:37:38 +02:00
Claudio Atzori 5e23fb3a74 code formatting 2020-05-30 10:52:56 +02:00
Claudio Atzori 54ca8ed6c3 uniformed param name (isLookupUrl), Vocab model classes defined as Serializable 2020-05-29 18:17:30 +02:00
Michele Artini adb798faa5 import from db using is vocabularies 2020-05-29 12:03:51 +02:00
Michele Artini f5ce7d76e1 resolve conflicts 2020-05-27 12:49:17 +02:00
Michele Artini a25598140a result pids (new xpaths + IS vocabularies) 2020-05-27 12:10:20 +02:00
Michele Artini 7a7272d9ec result pids (new xpaths + IS vocabularies) 2020-05-27 12:10:20 +02:00
Michele Artini 3ceb2d2853 match terms with vocabularies 2020-05-27 11:34:13 +02:00
Michele Artini c6af36496a result pids (new xpaths + IS vocabularies) 2020-05-26 13:11:09 +02:00
Michele Artini 093f1aff03 result pids (new xpaths + IS vocabularies) 2020-05-26 13:06:55 +02:00
Miriam Baglioni d3d36647d2 merge upstream 2020-05-25 10:38:22 +02:00
Miriam Baglioni dbde2d243a changed due to move of PacePerson from dhp-graph-mapper to dhp-common 2020-05-25 10:35:39 +02:00
Miriam Baglioni 8f6ce970f9 moved PacePerson to dhp-common to avoid conflict in dependency with graph-mapper 2020-05-25 10:25:55 +02:00
Claudio Atzori de108f54d6 code formatting 2020-05-23 10:21:19 +02:00
Claudio Atzori 6b56cae57d added mapping for bestaccessrights 2020-05-23 09:57:39 +02:00
Claudio Atzori 3cf2796ac6 code formatting 2020-05-22 12:34:00 +02:00
Michele Artini dc4621b3cb filter ORCID e MAG identifiers 2020-05-22 12:25:01 +02:00
Michele Artini 9f2d0f1b08 filter ORCID e MAG identifiers 2020-05-22 11:00:27 +02:00
Michele Artini 9de71e54a8 filter ORCID e MAG identifiers 2020-05-22 10:47:39 +02:00
Michele Artini c5f7e17348 author fullnames 2020-05-22 10:08:02 +02:00
Claudio Atzori 7838f2c63f init the empty list for author pids mapped from OAF 2020-05-15 17:06:01 +02:00
Claudio Atzori 7a89507ab1 code formatting 2020-05-15 15:16:54 +02:00
Claudio Atzori cfc8948717 fixed mapping OdfToGraph: pick the correct element to map author pids and author affiliations; extended mapping Oaf2Graph: added support for author pids 2020-05-15 12:26:16 +02:00
Claudio Atzori a832658296 code formatting 2020-05-15 10:21:09 +02:00
Claudio Atzori eb64335a54 parallel implementation for graph Hive importer 2020-05-15 09:05:26 +02:00
Claudio Atzori f044d09315 revised mapping: more accurate mapping for name/surname from datacite format; improved mapping of null values 2020-05-14 15:07:24 +02:00
Claudio Atzori ab37953332 added global properties in wf definitions to avoid repeating name-node and job-tracker in the (many) distcp actions; reintroduced output directory removal at the beginning of each spark action 2020-05-14 10:25:41 +02:00
Claudio Atzori 5ecacad70a fixed default resource typing in Oaf/Odf mapping 2020-05-13 17:01:11 +02:00
Miriam Baglioni f5d785e096 used the DbClient moved in dhp-common 2020-05-11 13:59:42 +02:00
Miriam Baglioni 2abb84877d Merge branch 'master' into blacklist 2020-05-11 10:37:49 +02:00
Miriam Baglioni 5e3548add6 - 2020-05-11 10:33:08 +02:00
Miriam Baglioni 871e079b45 merged with master 2020-05-11 10:20:00 +02:00
Miriam Baglioni 32301451ec merge upstream 2020-05-11 09:42:23 +02:00
Miriam Baglioni 4c94231cad merge with master fork 2020-05-08 12:25:57 +02:00
Claudio Atzori 62ea19f1d3 introduced mapping for ExternalReferences, made urls defined within an instance unique 2020-05-08 09:43:26 +02:00
Miriam Baglioni 207b899d6d merged with upstream 2020-05-07 11:43:53 +02:00
Miriam Baglioni 5efae3acb9 new workflow for job3 2020-05-07 11:38:10 +02:00
Claudio Atzori 17860d3ab6 general changes in the RAW graph mapping: missing collectedfrom/hostedby causes records to be skipped; factored out most of the constants in ModelConstants class (dhp-schemas) 2020-05-06 13:20:02 +02:00
Michele Artini ccc609f909 new module for the production of broker events 2020-05-05 17:09:00 +02:00
Miriam Baglioni 31ea05297d moved the DbClient to common and added needed dependency to pom 2020-05-04 12:22:28 +02:00
Miriam Baglioni 4b0bd91012 - 2020-04-30 12:45:28 +02:00
Miriam Baglioni 3abb76ff7a merge with upstream 2020-04-30 11:15:54 +02:00
Michele Artini eb9bd42970 fixed a problem with journals 2020-04-30 11:06:05 +02:00
Miriam Baglioni 638a3c465b - 2020-04-30 11:05:17 +02:00
Michele Artini a0a6109bbc fixed a problem with journals 2020-04-30 11:03:46 +02:00
Claudio Atzori 439c6255a2 cleanup 2020-04-29 19:09:07 +02:00
Claudio Atzori 77ac995770 cleaned up poms, added descriptions 2020-04-29 18:44:17 +02:00
Miriam Baglioni 3cffee74b9 merge with upstream 2020-04-29 18:25:29 +02:00
Michele Artini c43b4c8962 formatting 2020-04-29 12:56:58 +02:00
Michele Artini a5d7007005 Fix relations in migration
Fix pom.xml in dhp-stats-update
2020-04-29 12:05:41 +02:00
Miriam Baglioni f7695e833c resolved conflicts 2020-04-29 11:41:31 +02:00
Claudio Atzori 6f5b899038 reformatted code according to the updated style descriptor 2020-04-28 11:23:29 +02:00
Claudio Atzori ac25f2d8d1 integrated changes from master 2020-04-28 08:55:28 +02:00
Claudio Atzori a0bdbacdae switched automatic code formatting plugin to net.revelc.code.formatter:formatter-maven-plugin 2020-04-27 14:52:31 +02:00
Claudio Atzori 7a3f8085f7 switched automatic code formatting plugin to net.revelc.code.formatter:formatter-maven-plugin 2020-04-27 14:45:40 +02:00
Michele Artini 1260d03eba skip empty projects 2020-04-27 13:51:13 +02:00
Claudio Atzori 268462623a refined definition of equals and hash methods for Oaf model classes, now based on entity identifier, while relations consider sourceid, targetid and relationship semantic; Factored out function to group Oaf objects in grouping operations; Raw graph creation procedure merges entities and relationships providing the same identity 2020-04-24 14:42:01 +02:00
Claudio Atzori a3e480d1c9 implmented DispatchEntitiesApplication using spark2 datasets 2020-04-24 14:36:53 +02:00
Claudio Atzori 48157e0fc4 GraphHiveImporterJob moved in dedicate package 2020-04-24 14:32:28 +02:00
Michele Artini 072eae3803 fixed a problem with missing contexts 2020-04-23 16:42:49 +02:00
Michele Artini b164d96874 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-04-23 16:19:16 +02:00
Michele Artini d920ce501e fixed a problem with missing instances 2020-04-23 16:18:40 +02:00
Claudio Atzori 91f81107b1 applying code formatting 2020-04-23 07:52:32 +02:00
Claudio Atzori e81960335c Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-04-22 10:46:37 +02:00
Michele Artini 9e4d58f505 ResultType 2020-04-22 10:07:26 +02:00
Claudio Atzori c891661822 small adjustments in the graph2hive workflow 2020-04-21 18:52:23 +02:00
Claudio Atzori d772d967aa restored changes from master branch 2020-04-20 18:53:06 +02:00
miconis 4da13e4570 Revert "Merge branch 'master' into deduptesting"
This reverts commit 772f75d167, reversing
changes made to 5f45f2c77f.
2020-04-20 16:04:49 +02:00
Claudio Atzori d714bfb4d4 collectedfrom field moved in common parent class Oaf.java 2020-04-20 12:25:19 +02:00
Michele Artini 8ff7facfa3 fixed collectedFrom ID 2020-04-20 11:09:27 +02:00
Michele Artini 25307965d2 add a default datainfo if missing 2020-04-20 09:43:27 +02:00
Claudio Atzori ad7a131b18 introduced common project code formatting plugin, works on the commit hook, based on https://github.com/Cosium/git-code-format-maven-plugin, applied to each java class in the project 2020-04-18 12:42:58 +02:00
Claudio Atzori ff30f99c65 using newline delimited json files for the raw graph materialization. Introduced contentPath parameter 2020-04-15 16:16:20 +02:00
Sandro La Bruzzo c36239e693 fixed incremental indexing 2020-04-14 17:47:36 +02:00
Claudio Atzori 6b5f9ca9cb raw graph creation workflow moved under dhp-graph-mapper, claims integration is included 2020-04-10 17:53:07 +02:00
Claudio Atzori 47f3d9b757 unit test for GraphHiveImporterJob 2020-04-08 13:24:43 +02:00
Claudio Atzori d74e128aa6 Utility classes moved in dhp-common and dhp-schemas 2020-04-07 11:56:22 +02:00
Claudio Atzori 1767dfaa3f method can be protected, it is meant to be used only in tests 2020-03-27 14:31:26 +01:00
Sandro La Bruzzo 15d9106b3f FIxed merge of dhp dedup 2020-03-27 13:48:44 +01:00
Sandro La Bruzzo 8c9a56a0c8 refactored package name 2020-03-27 13:19:33 +01:00
Sandro La Bruzzo a9935f80d4 refactor class name and workflow name for graph mapper, added javadoc 2020-03-27 13:16:24 +01:00
Claudio Atzori 673e744649 moved openaire specific implementations under dedicated package eu.dnetlib.dhp.oa 2020-03-27 10:42:17 +01:00
Claudio Atzori 098fabab3f reorganizing content under dhp-workflows/dhp-graph-mapper 2020-03-26 19:44:19 +01:00
Claudio Atzori 77c4294924 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-03-26 18:26:52 +01:00
Claudio Atzori 43cbcda7ef unit test for SparkGraphImporterJob 2020-03-26 18:26:40 +01:00
Sandro La Bruzzo 0cd022ad6a merge with master 2020-03-26 14:08:29 +01:00
Sandro La Bruzzo 0594b92a6d implemented relation with dataset 2020-03-19 11:11:07 +01:00
Sandro La Bruzzo addaaa091f migrate relation from RDD to Dataset 2020-03-13 09:13:20 +01:00
Claudio Atzori 7b6f0c8756 reading graph dump as text files, encoded as newline-delimited JSON records, as indicated in the wiki 2020-03-10 17:19:17 +01:00
Claudio Atzori 9af3e904be close the SparkSession at the end 2020-03-04 10:53:31 +01:00
Claudio Atzori 25ceec29ab code formatting 2020-03-04 10:44:24 +01:00
Claudio Atzori 60bc2b1a20 drop the hive DB before populating it from scratch 2020-02-27 10:10:55 +01:00
Sandro La Bruzzo 2b8675462f refactoring code 2020-02-19 10:07:08 +01:00
Claudio Atzori 1b18fd4d54 sync with master branch 2020-02-17 13:49:46 +01:00
Sandro La Bruzzo 76ee85141a added oozie job for DNET migration and implemented Spark job for extracting entities 2020-02-17 12:31:44 +01:00
Claudio Atzori 1fee6e2b7e implemented XML records construction and serialization, indexing WIP 2020-02-13 16:53:27 +01:00
Sandro La Bruzzo 19a80e4638 implemented workfow for aggregation and generation of infospace graph 2020-01-24 09:58:55 +01:00
Michele Artini b35c59eb42 partial implementation of entities from db 2020-01-20 16:04:19 +01:00
Claudio Atzori 245b4cbbb3 removed import limit 2019-11-08 17:41:01 +01:00
Claudio Atzori 5308f05a02 allow to speficy the target hive DB name in the infospace import workflow 2019-11-07 17:38:09 +01:00
Claudio Atzori a52d5bde4f simplified import procedure, maps the infospace as hive tables 2019-11-06 17:45:52 +01:00
Claudio Atzori 1e7a2ac41d align parmeter names, graph import procedure WIP 2019-11-04 17:41:01 +01:00
Claudio Atzori 32ed4ae8d6 conversion utilities from protobuffer model to DHP model moved in dnet-mapreduce-jobs. Removed also the relative protobuf dependencies 2019-11-04 12:28:56 +01:00
Sandro La Bruzzo 997e57d45b Added entity filter to spark class 2019-10-30 12:19:03 +01:00
Claudio Atzori c8bb81cd9a align dependencies with IIS cluster 2019-10-29 18:10:20 +01:00
Sandro La Bruzzo fe62ccd6dd implemented oozie wf 2019-10-28 12:12:50 +01:00
Sandro La Bruzzo 9ee4e5a196 remove a bit of syntactic sugar on the object inheritance :( 2019-10-25 18:10:30 +02:00
miconis 9fa5aebe9c minor changes 2019-10-25 12:52:28 +02:00
miconis 551eda1600 dataset, orp and software mapping implemented. addition of test resources for results. implementation of tests to check the result of the mapping 2019-10-25 12:48:25 +02:00
Sandro La Bruzzo eef14fade3 fixed conflict 2019-10-25 11:58:20 +02:00
Sandro La Bruzzo 0ea7e861ab added organizations test 2019-10-25 11:56:28 +02:00
miconis 4908165e05 implementation of the createPublication method to map publications 2019-10-25 11:54:14 +02:00
miconis df37bd6aaf placeholders for setters in createpublication 2019-10-25 10:57:19 +02:00
Sandro La Bruzzo c8d6d6bbd1 implemented organization mapping 2019-10-25 10:23:51 +02:00
miconis b525b54130 starting implementing the createPublication class 2019-10-25 09:55:31 +02:00
Claudio Atzori 4b331790e7 resolved conflicts 2019-10-25 09:45:12 +02:00
Claudio Atzori c929c1dfac more proto 2 graph model mappings 2019-10-25 09:25:36 +02:00
Sandro La Bruzzo 09ffda03a2 removed circular dependencies 2019-10-25 09:24:18 +02:00
Sandro La Bruzzo a10d071cf4 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2019-10-24 17:55:44 +02:00
Sandro La Bruzzo 3a8bb11695 mapped first part 2019-10-24 17:55:40 +02:00
Claudio Atzori d46371ceab Merge branch 'master' of https://code-repo.d2science.org/D-Net/dnet-hadoop 2019-10-24 17:43:55 +02:00
Claudio Atzori 0d88f9a6a4 added mapping for projects 2019-10-24 17:43:42 +02:00
Sandro La Bruzzo 2dd9572f41 added Mapping of OriginalDescription 2019-10-24 17:36:44 +02:00
miconis 351d850ad3 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2019-10-24 17:29:07 +02:00
miconis b66a7e3030 publication test added 2019-10-24 17:29:01 +02:00
Sandro La Bruzzo 6c32d418ac added conversion of ExtraInfo 2019-10-24 17:26:55 +02:00
Claudio Atzori 5f339a2c24 added mappings for basic types 2019-10-24 17:21:45 +02:00
Sandro La Bruzzo 9d04111391 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2019-10-24 17:05:52 +02:00
Sandro La Bruzzo 0902bac7dd fixed conflict 2019-10-24 17:05:42 +02:00
Claudio Atzori d8bfaa3687 added mapping for relations 2019-10-24 17:04:13 +02:00
Sandro La Bruzzo d2965636e0 created test for convert json into new OAF data model 2019-10-24 17:02:35 +02:00
Claudio Atzori 79c4f1bbd8 Protobuf to internal graph model, early steps 2019-10-24 16:56:13 +02:00
Claudio Atzori d38aeb8c6e DataInfo.provenanceaction not repeatable, fluent setters 2019-10-24 16:55:38 +02:00
Sandro La Bruzzo 5744a64478 added module dhp=graph-mapper 2019-10-24 16:00:28 +02:00