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parent
44a12d244f
commit
669a509430
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@ -5,21 +5,12 @@ import java.io.*;
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import java.io.IOException;
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import java.nio.charset.StandardCharsets;
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import org.apache.commons.io.IOUtils;
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import org.apache.hadoop.conf.Configuration;
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import org.apache.hadoop.fs.FSDataInputStream;
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import org.apache.hadoop.fs.FileSystem;
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import org.apache.hadoop.fs.Path;
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import org.apache.http.HttpEntity;
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import org.apache.http.HttpResponse;
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import org.apache.http.client.HttpClient;
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import org.apache.http.client.methods.HttpPost;
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import org.apache.http.client.methods.HttpPut;
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import org.apache.http.entity.ContentType;
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import org.apache.http.entity.InputStreamEntity;
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import org.apache.http.entity.StringEntity;
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import org.apache.http.entity.mime.MultipartEntityBuilder;
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import org.apache.http.impl.client.DefaultHttpClient;
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import org.apache.http.util.EntityUtils;
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@ -28,6 +19,8 @@ import com.google.gson.Gson;
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import eu.dnetlib.dhp.oa.graph.dump.zenodo.ZenodoModel;
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//import org.apache.http.entity.mime.MultipartEntityBuilder;
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public class APIClient implements Serializable {
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String urlString;
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@ -81,9 +74,26 @@ public class APIClient implements Serializable {
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return response.getStatusLine().getStatusCode();
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}
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// public int upload(InputStream is, String file_name) throws IOException {
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// HttpClient client = new DefaultHttpClient();
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//
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// HttpPut put = new HttpPut(bucket + "/" + file_name);
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// put.setHeader("Authorization", "Bearer " + access_token);
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// put.addHeader("Content-Type", "application/zip");
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//
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// HttpEntity data = MultipartEntityBuilder
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// .create()
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// // .addPart("file", new ByteArrayInputStream(is));
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// .addBinaryBody(file_name, is, ContentType.APPLICATION_OCTET_STREAM, file_name)
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// .build();
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// put.setEntity(data);
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//
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// HttpResponse response = client.execute(put);
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//
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// return response.getStatusLine().getStatusCode();
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// }
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public int upload(File file, String file_name) throws IOException {
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HttpClient client = new DefaultHttpClient();
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@ -112,12 +122,11 @@ public class APIClient implements Serializable {
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HttpResponse response = client.execute(post);
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return response.getStatusLine().getStatusCode();
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}
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public int publish() throws IOException {
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HttpClient client = new DefaultHttpClient();
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HttpPost post = new HttpPost(urlString +"/"+ deposition_id +"/actions/publish") ;
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HttpPost post = new HttpPost(urlString + "/" + deposition_id + "/actions/publish");
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post.setHeader("Authorization", "Bearer " + access_token);
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HttpResponse response = client.execute(post);
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@ -40,7 +40,7 @@ public class QueryInformationSystem {
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this.isLookUp = isLookUpService;
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}
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public static CommunityMap getMap(List<String> communityMap) {
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private CommunityMap getMap(List<String> communityMap) {
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final CommunityMap map = new CommunityMap();
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communityMap.stream().forEach(xml -> {
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@ -1,14 +1,11 @@
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package eu.dnetlib.dhp.oa.graph.dump;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import com.google.gson.Gson;
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import eu.dnetlib.dhp.application.ArgumentApplicationParser;
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import eu.dnetlib.dhp.common.DbClient;
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import eu.dnetlib.dhp.oa.graph.dump.zenodo.Creator;
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import eu.dnetlib.dhp.oa.graph.dump.zenodo.Metadata;
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import eu.dnetlib.dhp.oa.graph.dump.zenodo.ZenodoModel;
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import eu.dnetlib.dhp.schema.common.ModelSupport;
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import eu.dnetlib.dhp.schema.oaf.Relation;
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import java.io.File;
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import java.io.Serializable;
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import javax.management.Query;
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import org.apache.commons.io.IOUtils;
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import org.apache.commons.logging.Log;
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import org.apache.commons.logging.LogFactory;
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@ -18,72 +15,73 @@ import org.apache.hadoop.fs.LocatedFileStatus;
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import org.apache.hadoop.fs.Path;
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import org.apache.hadoop.fs.RemoteIterator;
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import java.io.BufferedWriter;
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import java.io.File;
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import java.io.Serializable;
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import java.sql.ResultSet;
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import java.util.Arrays;
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import java.util.List;
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import java.util.function.Consumer;
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import java.util.function.Function;
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import eu.dnetlib.dhp.application.ArgumentApplicationParser;
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import eu.dnetlib.dhp.utils.ISLookupClientFactory;
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public class SendToZenodo implements Serializable {
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private static final Log log = LogFactory.getLog(SendToZenodo.class);
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private static final Log log = LogFactory.getLog(SendToZenodo.class);
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public static void main(final String[] args) throws Exception {
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final ArgumentApplicationParser parser = new ArgumentApplicationParser(
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IOUtils
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.toString(
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SendToZenodo.class
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.getResourceAsStream(
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"/eu/dnetlib/dhp/oa/graph/dump/upload_zenodo.json")));
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public static void main(final String[] args) throws Exception {
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final ArgumentApplicationParser parser = new ArgumentApplicationParser(
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IOUtils
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.toString(
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SendToZenodo.class
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.getResourceAsStream(
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"/eu/dnetlib/dhp/oa/graph/dump/upload_zenodo.json")));
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parser.parseArgument(args);
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parser.parseArgument(args);
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final String hdfsPath = parser.get("hdfsPath");
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final String hdfsNameNode = parser.get("hdfsNameNode");
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final String access_token = parser.get("accessToken");
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final String connection_url = parser.get("connectionUrl");
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final String metadata = parser.get("metadata");
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final String isLookUpUrl = parser.get("isLookUpUrl");
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QueryInformationSystem qis = new QueryInformationSystem();
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qis.setIsLookUp(ISLookupClientFactory.getLookUpService(isLookUpUrl));
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CommunityMap communityMap = qis.getCommunityMap();
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final String hdfsPath = parser.get("hdfsPath");
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final String hdfsNameNode = parser.get("hdfsNameNode");
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final String access_token = parser.get("accessToken");
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final String connection_url = parser.get("url");
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final String metadata = parser.get("metadata");
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Configuration conf = new Configuration();
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conf.set("fs.defaultFS", hdfsNameNode);
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Configuration conf = new Configuration();
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conf.set("fs.defaultFS", hdfsNameNode);
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FileSystem fileSystem = FileSystem.get(conf);
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FileSystem fileSystem = FileSystem.get(conf);
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RemoteIterator<LocatedFileStatus> fileStatusListIterator = fileSystem
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.listFiles(
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new Path(hdfsPath), true);
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APIClient apiClient = new APIClient(connection_url, access_token);
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apiClient.connect();
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while (fileStatusListIterator.hasNext()) {
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LocatedFileStatus fileStatus = fileStatusListIterator.next();
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RemoteIterator<LocatedFileStatus> fileStatusListIterator = fileSystem.listFiles(
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new Path(hdfsPath), true);
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APIClient apiClient = new APIClient(connection_url, access_token);
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apiClient.connect();
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while(fileStatusListIterator.hasNext()){
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LocatedFileStatus fileStatus = fileStatusListIterator.next();
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Path p = fileStatus.getPath();
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String p_string = p.toString();
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String tmp = p_string.substring(0, p_string.lastIndexOf("/"));
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String community = tmp.substring(tmp.lastIndexOf("/") + 1);
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log.info("Sending information for community: " + community);
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String community_name = communityMap.get(community).replace(" ", "_");
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log.info("Copying information for community: " + community);
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fileSystem.copyToLocalFile(p, new Path("/tmp/" + community_name));
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File f = new File("/tmp/" + community_name);
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try {
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apiClient.upload(f, community_name);
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apiClient.sendMretadata(metadata);
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apiClient.publish();
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} catch (Exception e) {
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if (f.exists()) {
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log.info("Deleting information for community: " + community);
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f.delete();
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}
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} finally {
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if (f.exists()) {
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log.info("Deleting information for community: " + community);
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f.delete();
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}
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}
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}
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Path p = fileStatus.getPath();
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String p_string = p.toString();
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String tmp = p_string.substring(0, p_string.lastIndexOf("/") );
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String community = tmp.substring(tmp.lastIndexOf("/") + 1);
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log.info("Sending information for community: " + community);
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fileSystem.copyToLocalFile(p, new Path("/tmp/" + community));
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}
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File f = new File("/tmp/" + community);
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apiClient.upload(f, community);
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apiClient.sendMretadata(metadata);
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apiClient.publish();
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if (f.exists()){
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f.delete();
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}
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}
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}
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}
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}
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