Claudio Atzori
1c6db320f4
[graph provision] obtain context info from the context API instead from the ISLookUp service
2024-01-22 15:53:17 +01:00
Claudio Atzori
2655eea5bc
[orcid enrichment] drop paths before copying the non-modifyed contents
2024-01-19 16:28:05 +01:00
Claudio Atzori
c6b3401596
increased shuffle partitions for publications in the country propagation workflow
2024-01-19 10:15:39 +01:00
Miriam Baglioni
bcc0a13981
[enrichment single step] adding <end> element in wf definition
2024-01-18 17:39:14 +01:00
Miriam Baglioni
6af536541d
[enrichment single step] moving parameter file in correct location
2024-01-18 15:35:40 +01:00
Miriam Baglioni
a12a3eb143
-
2024-01-18 15:18:10 +01:00
Miriam Baglioni
82e9e262ee
[enrichment single step] remove parameter from execution
2024-01-17 17:38:03 +01:00
Miriam Baglioni
67ce2d54be
[enrichment single step] refactoring to fix issues in disappeared result type
2024-01-17 16:50:00 +01:00
Miriam Baglioni
59eaccbd87
[enrichment single step] refactoring to fix issue in disappeared result type
2024-01-15 17:49:54 +01:00
Giambattista Bloisi
21a14fcd80
Reusable RunSQLSparkJob for executing SQL in Spark through Oozie Spark Actions
...
Implements pivots table update oozie workflow
2024-01-15 10:18:14 +01:00
Miriam Baglioni
f612125939
fix issue on FoS integration. Removing the null values from FoS
2024-01-12 10:20:28 +01:00
Claudio Atzori
cb9e739484
Merge branch 'beta' into resource_types
2024-01-11 16:29:41 +01:00
Claudio Atzori
2753044d13
refined mapping for the extraction of the original resource type
2024-01-11 16:28:26 +01:00
Giambattista Bloisi
3c66e3bd7b
Create dedup record for "merged" pivots
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Do not create dedup records for group that have more than 20 different acceptance date
2024-01-10 22:59:52 +01:00
Giambattista Bloisi
10e135db1e
Use dedup_wf_002 in place of dedup_wf_001 to make explicit a different algorithm has been used to generate those kind of ids
2024-01-10 22:59:52 +01:00
Giambattista Bloisi
831cc1fdde
Generate "merged" dedup id relations also for records that are filtered out by the cut parameters
2024-01-10 22:59:52 +01:00
Giambattista Bloisi
1287315ffb
Do no longer use dedupId information from pivotHistory Database
2024-01-10 22:59:52 +01:00
Giambattista Bloisi
02636e802c
SparkCreateSimRels:
...
- Create dedup blocks from the complete queue of records matching cluster key instead of truncating the results
- Clean titles once before clustering and similarity comparisons
- Added support for filtered fields in model
- Added support for sorting List fields in model
- Added new JSONListClustering and numAuthorsTitleSuffixPrefixChain clustering functions
- Added new maxLengthMatch comparator function
- Use reduced complexity Levenshtein with threshold in levensteinTitle
- Use reduced complexity AuthorsMatch with threshold early-quit
- Use incremental Connected Component to decrease comparisons in similarity match in BlockProcessor
- Use new clusterings configuration in Dedup tests
SparkWhitelistSimRels: use left semi join for clarity and performance
SparkCreateMergeRels:
- Use new connected component algorithm that converge faster than Spark GraphX provided algorithm
- Refactored to use Windowing sorting rather than groupBy to reduce memory pressure
- Use historical pivot table to generate singleton rels, merged rels and keep continuity with dedupIds used in the past
- Comparator for pivot record selection now uses "tomorrow" as filler for missing or incorrect date instead of "2000-01-01"
- Changed generation of ids of type dedup_wf_001 to avoid collisions
DedupRecordFactory: use reduceGroups instead of mapGroups to decrease memory pressure
2024-01-10 22:59:52 +01:00
Antonis Lempesis
e024718f73
creating result_instances even when no pids exist for the instance
2024-01-10 22:25:50 +01:00
Miriam Baglioni
e711a05229
fixed conflicts
2024-01-10 11:03:42 +01:00
Miriam Baglioni
71d6f30711
Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta
2024-01-10 10:59:58 +01:00
b920307bdd
Changes to indicators
2024-01-09 00:47:09 +02:00
8b2cbb611e
Changes to beta db names
2024-01-09 00:40:56 +02:00
Antonis Lempesis
2e4cab026c
fixed the result_country definition
2024-01-08 16:01:26 +02:00
6b823100ae
Update buildIrishMonitorDB.sql
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New indicators added
2024-01-07 22:54:39 +02:00
75bfde043c
Historical Snapshots Workflow
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Create historical snapshots db with parameters:
hist_db_name=openaire_beta_historical_snapshots_xxx
hist_db_name_prev=openaire_beta_historical_snapshots_xxx (previous run of wf)
stats_db_name=openaire_beta_stats_xxx
stats_irish_db_name=openaire_beta_stats_monitor_ie_xxx
monitor_db_name=openaire_beta_stats_monitor_xxx
monitor_db_prod_name=openaire_beta_stats_monitor
monitor_irish_db_name=openaire_beta_stats_monitor_ie_xxx
monitor_irish_db_prod_name=openaire_beta_stats_monitor_ie
hist_db_prod_name=openaire_beta_historical_snapshots
hist_db_shadow_name=openaire_beta_historical_snapshots_shadow
hist_date=122023
hive_timeout=150000
hadoop_user_name=xxx
resumeFrom=CreateDB
2024-01-04 15:11:04 +02:00
Miriam Baglioni
cb14470ba6
added properties file in the forlder for the workflow of result to organization from inst repo propagation. Changes the path in the classes implementing the propagation
2023-12-22 14:50:05 +01:00
Miriam Baglioni
9f966b59d4
added properties file in the forlder for the workflow of result to community from semrel propagation. Changes the path in the classes implementing the propagation
2023-12-22 14:11:47 +01:00
Miriam Baglioni
2f3b5a133d
added properties file in the forlder for the workflow of result to community from organization propagation. Changes the path in the classes implementing the propagation
2023-12-22 13:56:40 +01:00
Miriam Baglioni
2f7b9ad815
added properties file in the forlder for the workflow of project to result propagation. Changes the path in the classes implementing the propagation
2023-12-22 11:46:15 +01:00
Miriam Baglioni
f2352e8a78
changed in the classes the path for the property files for the propagation of community from project
2023-12-22 11:43:34 +01:00
Miriam Baglioni
009730b3d1
added properties file in the forlder for the workflow of orcid propagation. Changes the path in the classes implementing the propagationchanged the path to the parameter file in the class for entitytoorganization propagation
2023-12-22 11:42:09 +01:00
Miriam Baglioni
89f269c7f4
changed the path to the parameter file in the class for entitytoorganization propagation
2023-12-22 11:37:50 +01:00
Miriam Baglioni
b06aea0adf
adding the bulkTag parameter file in the folder for the oozie workflow for bulkTagging. Changes the path in the class
2023-12-22 11:35:37 +01:00
Miriam Baglioni
3afd4aa57b
adjustments for country propagation
2023-12-22 11:27:30 +01:00
ffdd03d2f4
Monitor Irish Stats WF
...
Parameters (with examples):
stats_db_name=openaire_beta_stats_20231208
monitor_irish_db_name=openaire_beta_stats_monitor_ie_20231208b
monitor_irish_db_prod_name=openaire_beta_stats_monitor_ie
graph_db_name=openaire_beta_20231208
monitor_irish_db_shadow_name=openaire_beta_stats_monitor_ie_shadow
hive_timeout=150000
hadoop_user_name=dnet.beta
resumeFrom=Step1-buildIrishMonitorDB
2023-12-22 11:05:24 +02:00
40b98d8182
Changes to indicators and funders definition
...
- Changes result_refereed definition
- Added result_country indicator
- Added indi_pub_green_with_license indicator
- Added country from jurisdiction to funders
2023-12-22 10:29:20 +02:00
Claudio Atzori
62104790ae
added metaresourcetype to the result hive DB view
2023-12-21 12:27:10 +01:00
Miriam Baglioni
5011c4d11a
refactoring after compiletion
2023-12-20 15:57:26 +01:00
Miriam Baglioni
4740c808f7
-
2023-12-20 14:26:54 +01:00
Miriam Baglioni
d410ea8a41
added needed parameter
2023-12-19 12:15:01 +01:00
15fd93a2b6
uploaded input parameters on CreateBaseline WF
2023-12-18 12:21:55 +01:00
9d342a47da
updated the transformation Baseline workflow to include mdstore rollback/commit action
2023-12-18 11:48:57 +01:00
Miriam Baglioni
3eca5d2e1c
-
2023-12-18 09:55:27 +01:00
Miriam Baglioni
01ce0b9c76
[doiboost - preprocess] remove transition to orcid preparation from sequence of steps at the beginning of the workflow
2023-12-15 12:24:55 +01:00
Miriam Baglioni
0d8e496a63
-
2023-12-15 12:16:43 +01:00
Claudio Atzori
ff924215b8
[graph provision] added tests for new peerreviewed field
2023-12-12 11:21:30 +01:00
Claudio Atzori
7e8eff40c1
[graph provision] added tests for the new model fields
2023-12-12 08:54:15 +01:00
Miriam Baglioni
8752d275fa
removed not needed parameter
2023-12-09 15:24:45 +01:00
Miriam Baglioni
d4eedada71
adjusting workflow definition
2023-12-09 15:20:11 +01:00
Claudio Atzori
cb71a7936b
[graph cleaning] avoid stack overflow error when navigating Oaf objects declaring an Enum
2023-12-07 23:09:54 +01:00
Claudio Atzori
70eb1796b2
logging typo
2023-12-07 14:08:04 +01:00
Claudio Atzori
c381bacee0
[enrichment] passing the community API base URL
2023-12-07 14:07:11 +01:00
Miriam Baglioni
336fb31d87
[community_result_propagation] adjusting starting poit of workflow
2023-12-07 10:27:25 +01:00
Miriam Baglioni
c0cde53bf6
[bulktagging] setting first step of bulktaggin as the copy of the entities and relations not involved in the tagging'
2023-12-07 10:08:35 +01:00
Miriam Baglioni
616622d2bb
first version of the workflow single step
2023-12-07 09:59:52 +01:00
Claudio Atzori
259c69e446
[orcid enrichment] fixed workflow definition
2023-12-06 19:41:53 +01:00
Claudio Atzori
431c6bb08a
[dedup] added isLookupUrl to the graph consistency workflow definition, required now by the entity grouping phase
2023-12-06 11:06:46 +01:00
Claudio Atzori
321922772b
added serialization for the new fields imported for the Irish tender
2023-12-05 16:37:04 +01:00
Claudio Atzori
c5b7253130
[community_organization propagation] fixed workflow parameters
2023-12-05 09:13:33 +01:00
Claudio Atzori
3c3bdb8318
[bulktagging] fixed workflow parameters
2023-12-05 09:08:48 +01:00
Claudio Atzori
2a233a89aa
[graph grouping] added isLookupUrl to the workflow definition, passed to the grouping spark aciton
2023-12-03 13:32:52 +01:00
Claudio Atzori
178a14c491
code formatting
2023-12-03 13:31:58 +01:00
3caf6ff27e
Extracted the correct original type to pass to instanceTypeMapping in Crossref Mapping
2023-12-01 16:33:56 +01:00
Claudio Atzori
511a98dd80
fixed doiboost process workflow, removed references to the ProcessORCID step
2023-12-01 16:21:53 +01:00
Claudio Atzori
09d061e90b
Merge branch 'beta' into orcid_import
2023-12-01 15:05:35 +01:00
Claudio Atzori
93a700742a
Merge pull request 'Changes for tables and creation of the new indicator indi_is_result_accessible' ( #363 ) from antonis.lempesis/dnet-hadoop:beta into beta
...
Reviewed-on: #363
2023-12-01 15:05:23 +01:00
Claudio Atzori
0c3c9ea43d
Merge pull request 'StatsDB workflow to export actionsets about OA routes, diamond, and publicly-funded' ( #355 ) from dimitris.pierrakos/dnet-hadoop:beta into beta
...
Reviewed-on: #355
2023-12-01 15:03:56 +01:00
Claudio Atzori
33cb483c75
using objectSubType as originalType in Crossref2Oaf, code formatting
2023-12-01 15:03:05 +01:00
c9d995dde0
New institutions added
2023-12-01 15:44:35 +02:00
a397112cb8
Add new indicator
...
Add indi_pub_publicly_funded
2023-12-01 15:00:18 +02:00
76594ded23
Changes to indicators
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Fixes on open access colours indicators
- indi_pub_green_oa
- indi_pub_gold_oa
- indi_pub_hybrid
- indi_pub_bronze_oa
- indi_pub_diamond
2023-12-01 13:38:19 +02:00
Claudio Atzori
622fafbd2e
Merge branch 'beta' into orcid_import
2023-12-01 12:28:14 +01:00
bf0fd27c36
Removed unused function
...
Applied PR Comment of Giambattista in the PR
2023-12-01 12:16:42 +01:00
48430a32a6
Update StatsAtomicActionsJob.java
...
Added indi_funded_result_with_fundref indicator
2023-12-01 11:35:01 +02:00
cdfb7588dd
code formatting
2023-11-30 15:31:42 +01:00
5e22b67b8a
Merge remote-tracking branch 'origin/beta' into orcid_import
2023-11-30 15:27:46 +01:00
f718caaac9
Added copy of the untouched entities of the graph
2023-11-30 14:51:00 +01:00
7b5e04f37e
removed Orcid intersection on DOIBoost
2023-11-30 14:36:50 +01:00
Claudio Atzori
6f10791e77
Merge branch 'beta' into propagationapi
2023-11-30 14:20:18 +01:00
Claudio Atzori
4e1aac2e2f
resolved conflict in pom.xml before applying the changes from [COAR based resource types & Irish tender] #350
2023-11-29 14:37:52 +01:00
86b5775e08
added vocabulary in instanceTypeMapping for
...
- DOIBoost
- Datacite
- PubMed
- Scholexplorer Datasource
2023-11-29 13:15:43 +01:00
c96ff54b45
Merge remote-tracking branch 'origin/resource_types' into resource_types
2023-11-29 12:45:41 +01:00
af1c2634b3
added instanceTypeMapping original field in the mapping of
...
- DOIBoost
- Datacite
- PubMed
- Scholexplorer Datasource
2023-11-29 12:45:30 +01:00
279100fa52
added test
2023-11-29 11:17:58 +01:00
59111713fa
added comment
2023-11-28 09:00:48 +01:00
6f4d0c05ea
Implemented Author MErger for ORCID that takes in account the case when name and surname are swapped
2023-11-28 08:43:56 +01:00
Miriam Baglioni
8eb70e6657
refactoring
2023-11-27 15:13:15 +01:00
Miriam Baglioni
e3cce9a5a0
mergin with branch beta
2023-11-27 15:10:55 +01:00
Miriam Baglioni
48e0427a23
changed the parameter from production to baseURL. Fixed issue in tagging configuration
2023-11-27 15:10:27 +01:00
34a4b3cbdf
Implemented ORCID Enrichment
2023-11-24 12:39:58 +01:00
359e81b7a6
Update StatsAtomicActionsJob.java
...
Bug fix for duplicate bronze checks
2023-11-23 10:48:55 +02:00
Claudio Atzori
2c77638bf5
Merge branch 'beta' into cleaning_8898
2023-11-22 14:00:10 +01:00
Claudio Atzori
745039ad5b
Merge branch 'beta' into 9117_pubmed_affiliations
2023-11-22 13:52:53 +01:00
Claudio Atzori
11a1207f9c
[graph cleaning] applying coar based vocabularies in bulk
2023-11-22 12:22:14 +01:00
a94a54a2d0
Changes for tables and creation of the new indicator indi_is_result_accessible
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- Drop table statements for all tables to avoid duplicates in case of wf rerun
- Add pdfsaggregated step to create the indi_is_result_accessible table. This step is executed on the new impala cluster only, since the pdfaggregation_i is updated on this cluster.
2023-11-15 14:32:18 +02:00
Miriam Baglioni
eaf0a702de
-
2023-11-14 14:53:34 +01:00
6ce36b3e41
Implemented ORCID Workflow on DHP-Aggregation for retrieving ORCID DUMP and generating tables
2023-11-14 12:04:29 +01:00
d524e30866
Changes to actionsets
...
Resolve comments from
#355
2023-11-14 09:46:52 +02:00
Miriam Baglioni
5bc97615d5
-
2023-11-03 15:35:10 +01:00
Claudio Atzori
Miriam Baglioni
Giambattista Bloisi
Giambattista Bloisi
Antonis Lempesis
dimitrispie
Sandro La Bruzzo