 Miriam Baglioni
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d55cfe0ea5
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apply changes in #40 (comment)
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2020-08-13 12:06:20 +02:00 |
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Miriam Baglioni
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80866bec7d
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apply changes in #40 (comment)
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2020-08-13 12:06:05 +02:00 |
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Miriam Baglioni
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1400978c0a
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apply changes in #40 (comment)
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2020-08-13 12:05:44 +02:00 |
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Miriam Baglioni
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7b941a2e0a
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apply changes in #40 (comment)
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2020-08-13 12:05:17 +02:00 |
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Miriam Baglioni
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f7474f50fe
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apply changes in #40 (comment)
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2020-08-13 12:04:52 +02:00 |
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Miriam Baglioni
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367203f412
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apply changes in #40 (comment)
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2020-08-13 12:04:33 +02:00 |
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Miriam Baglioni
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3ab4809d31
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apply changes in #40 (comment)
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2020-08-13 12:04:10 +02:00 |
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Miriam Baglioni
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02a4986e7b
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Applying changed from code reviews #40 (comment) and #40 (comment) and #40 (comment)
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2020-08-13 11:53:01 +02:00 |
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Miriam Baglioni
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235d4e4d6e
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moved Context as relevant for Communities dump
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2020-08-12 18:16:45 +02:00 |
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Miriam Baglioni
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adf9f96a67
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test for extraction of relation between organizations and context
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2020-08-12 10:04:47 +02:00 |
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Miriam Baglioni
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7400cd019d
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removed not needed variable
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2020-08-12 10:03:33 +02:00 |
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Miriam Baglioni
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98d28bab5c
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fixed missing _ in context nsprefix
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2020-08-12 10:00:18 +02:00 |
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Miriam Baglioni
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25f4fbceea
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draft of test and resources
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2020-08-11 17:37:22 +02:00 |
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Miriam Baglioni
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30a2b19b65
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changed metadata for deposition od covid-19 dump in Zenodo
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2020-08-11 17:36:56 +02:00 |
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Miriam Baglioni
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49788b532a
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changed to mirror changes in the schema
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2020-08-11 16:05:03 +02:00 |
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Miriam Baglioni
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b08511287b
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-
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2020-08-11 16:01:36 +02:00 |
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Miriam Baglioni
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7e81a17068
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changed the XQUERY to mirror the change in the code
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2020-08-11 16:00:33 +02:00 |
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Miriam Baglioni
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37ad2f28e9
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removed added | in prefix for datasource
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2020-08-11 15:55:06 +02:00 |
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Miriam Baglioni
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f31c2e9461
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enabled test
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2020-08-11 15:49:25 +02:00 |
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Miriam Baglioni
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2d67476417
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merge branch with master
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2020-08-11 15:46:04 +02:00 |
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Miriam Baglioni
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6d3804e24c
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-
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2020-08-11 15:45:12 +02:00 |
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Miriam Baglioni
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0603ec4757
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changed test to upload the dump for covid-19 community
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2020-08-11 15:43:25 +02:00 |
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Miriam Baglioni
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7dfd56df9d
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-
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2020-08-11 15:42:35 +02:00 |
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Miriam Baglioni
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a169d7e7c1
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added test file for the MakeTar class
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2020-08-11 15:40:41 +02:00 |
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Miriam Baglioni
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acb0926b2e
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json schemas for the dumped entities and relation
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2020-08-11 15:39:48 +02:00 |
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Miriam Baglioni
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ff52c51f92
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added the communityMapPath parameter and removed the isLookUpUrl parameter
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2020-08-11 15:39:22 +02:00 |
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Miriam Baglioni
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6f43acda5e
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added the maketar and send to zenodo step. Adjusted wf parameters
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2020-08-11 15:38:20 +02:00 |
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Miriam Baglioni
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ddc19de2e9
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removed the isLookUpUrl among the parameters
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2020-08-11 15:37:47 +02:00 |
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Miriam Baglioni
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592a8ea573
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added parameter file for maketar class
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2020-08-11 15:37:14 +02:00 |
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Miriam Baglioni
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77a0951b32
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added the make archive step in the workflow
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2020-08-11 15:32:32 +02:00 |
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Miriam Baglioni
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cf4d918787
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added description, changed parameter name and added method
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2020-08-11 15:27:31 +02:00 |
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Miriam Baglioni
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dc5fc5366d
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Creation of an archive for each related dump part
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2020-08-11 15:26:06 +02:00 |
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Miriam Baglioni
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0ce49049d6
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added description
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2020-08-11 15:25:11 +02:00 |
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Miriam Baglioni
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9bae991167
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added description of the class
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2020-08-11 11:20:43 +02:00 |
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Miriam Baglioni
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341dc59ead
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removed the repartition(1). Added code for the creation of an archive containing all the parts dumped for each community
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2020-08-11 11:18:58 +02:00 |
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Miriam Baglioni
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1991a49f70
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removed reference to isLookUp to get the communityMap
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2020-08-10 18:02:56 +02:00 |
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Miriam Baglioni
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c378c38546
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disabled test. The testing functionalities for hte upload in Zenode are moved to common
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2020-08-10 12:41:11 +02:00 |
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Miriam Baglioni
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63ad0ed209
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changed to use communityMapPath instead of IsLookUp
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2020-08-10 12:40:19 +02:00 |
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Miriam Baglioni
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cec795f2ea
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changed resources to mirror changes in the model
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2020-08-10 12:39:35 +02:00 |
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Miriam Baglioni
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f50e3e7333
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changed the class for which to generate the schema
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2020-08-10 12:03:49 +02:00 |
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Miriam Baglioni
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b8c26f656c
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test using communityMapPath instead of isLookUp
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2020-08-10 12:02:55 +02:00 |
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Miriam Baglioni
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fe88904df0
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changed the wf definition
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2020-08-10 12:01:14 +02:00 |
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Miriam Baglioni
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87856467e2
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removed isLookUpUrl and added code to read from HDSF the communitymap
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2020-08-10 11:38:41 +02:00 |
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Miriam Baglioni
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1cf7043e26
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removed isLookUoUrl from the parameters
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2020-08-10 11:38:03 +02:00 |
 Sandro La Bruzzo
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0ade33ad15
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updated mergeFrom function for DLI Unknown
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2020-08-10 10:18:35 +02:00 |
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Miriam Baglioni
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46986aae2d
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added the new parameter for newdeposion/newversion and concept_record_id
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2020-08-07 18:00:06 +02:00 |
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Miriam Baglioni
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3aedfdf0d6
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added option to do a new deposition or new version of an old deposition
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2020-08-07 17:49:14 +02:00 |
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Miriam Baglioni
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1b3ad1bce6
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filter out authors pid (only orcid). Added check to get unique provenance for context id. filtr out countries with code UNKNOWN
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2020-08-07 17:48:18 +02:00 |
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Miriam Baglioni
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5ceb8c5f0a
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moved constants from graph.Constants
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2020-08-07 17:46:47 +02:00 |
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Miriam Baglioni
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6c65c93c0e
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refactoring
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2020-08-07 17:45:35 +02:00 |
|
Miriam Baglioni
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68adf86fe4
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refactoring
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2020-08-07 17:43:20 +02:00 |
|
Miriam Baglioni
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26d2ad6ebb
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refactoring
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2020-08-07 17:41:56 +02:00 |
|
Miriam Baglioni
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9675af7965
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refactoring
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2020-08-07 17:41:07 +02:00 |
|
Miriam Baglioni
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346a91f4d9
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Added constants
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2020-08-07 17:35:39 +02:00 |
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Miriam Baglioni
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d52b0e1797
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no use of IsLookUp. The query is done once and its result stored on HDFS. The path to the result is given instead of the isLookUpUrl
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2020-08-07 17:34:40 +02:00 |
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Miriam Baglioni
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ae1b7fbfdb
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changed method signature from set of mapkey entries to String representing path on file system where to find the map
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2020-08-07 17:32:27 +02:00 |
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Miriam Baglioni
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931fa2ff00
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removed dependencies
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2020-08-07 16:46:37 +02:00 |
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Miriam Baglioni
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545ea9f77e
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moved in common. Zenodo response model and APIClient to deposit in Zenodo
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2020-08-07 16:44:51 +02:00 |
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Miriam Baglioni
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da9b012c15
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fixed dewcription
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2020-08-06 11:55:44 +02:00 |
|
Miriam Baglioni
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6dbadcf181
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the new schema for the dumped result
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2020-08-06 11:05:56 +02:00 |
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Sandro La Bruzzo
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4fb1821fab
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Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop
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2020-08-06 10:28:31 +02:00 |
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Sandro La Bruzzo
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9d9e9edbd2
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improved extractEntity Relation workflows using dataset
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2020-08-06 10:28:24 +02:00 |
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Miriam Baglioni
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adf0ca5aa7
|
test to send is from hdfs
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2020-08-05 14:24:43 +02:00 |
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Miriam Baglioni
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14eda4f46e
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added method to try to put inputstream to zenodo
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2020-08-05 14:18:25 +02:00 |
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Miriam Baglioni
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e737a47270
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added classes to try to send input stream to zenodo for the upload
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2020-08-05 14:17:40 +02:00 |
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Miriam Baglioni
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873e9cd50c
|
changed hadoop setting to connect to s3
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2020-08-04 15:37:25 +02:00 |
 Alessia Bardi
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a29565ff57
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code formatting
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2020-08-04 12:55:27 +02:00 |
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Alessia Bardi
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01db29e208
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fixes redmine issue #5846: datacite and its different namespace declarations
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2020-08-04 12:53:48 +02:00 |
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Alessia Bardi
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b4e4e5f858
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do not duplicate result PIDs
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2020-08-04 12:52:14 +02:00 |
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Alessia Bardi
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09a323d18d
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testing a dataset from Nakala
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2020-08-04 12:50:52 +02:00 |
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Alessia Bardi
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c35bf486cc
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added handle among the possible PIDs
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2020-08-04 12:50:12 +02:00 |
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Miriam Baglioni
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5b651abf82
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merge branch with master
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2020-08-04 10:14:07 +02:00 |
|
Miriam Baglioni
|
901ae37f7b
|
added step to workflow
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2020-08-03 18:12:54 +02:00 |
|
Miriam Baglioni
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fa38cdb10b
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added resource
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2020-08-03 18:11:12 +02:00 |
|
Miriam Baglioni
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e9fcc0b2f1
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commented test unit - to decide change for mirroring the changed logics
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2020-08-03 18:10:53 +02:00 |
|
Miriam Baglioni
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e43aeb139a
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added new property file and changed some parameter to old files
|
2020-08-03 18:07:28 +02:00 |
|
Miriam Baglioni
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aa9f3d9698
|
changed logic for save in s3 directly
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2020-08-03 18:06:18 +02:00 |
|
Miriam Baglioni
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d465f0eec9
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added fulltext to result
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2020-08-03 18:03:27 +02:00 |
|
Miriam Baglioni
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ec4b392d12
|
added new dependencies for writing on s3
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2020-08-03 17:57:04 +02:00 |
|
Miriam Baglioni
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c892c7dfa7
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changed to query for community map just once and save the result for remaining executions
|
2020-08-03 17:56:31 +02:00 |
|
Alessia Bardi
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8cc067fe76
|
specific test for claims
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2020-08-03 11:17:50 +02:00 |
 Michele Artini
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652b13abb6
|
Merge branch 'master' into nsprefix_blacklist
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2020-07-31 07:58:37 +02:00 |
 Claudio Atzori
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cd631bb5bc
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defaults fixed in the cleaning workflow forces result.publisher to NULL when result.publisher.value in empty
|
2020-07-30 17:03:53 +02:00 |
|
Miriam Baglioni
|
872d7783fc
|
-
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2020-07-30 16:50:36 +02:00 |
|
Miriam Baglioni
|
57c87b7653
|
re-implemented to fix issue on not serializable Set<String> variable
|
2020-07-30 16:43:43 +02:00 |
|
Miriam Baglioni
|
ef8e5957b5
|
added specific directory where to save results
|
2020-07-30 16:42:46 +02:00 |
|
Miriam Baglioni
|
75f3361c85
|
-
|
2020-07-30 16:41:31 +02:00 |
|
Miriam Baglioni
|
3f695b25fa
|
refactoring
|
2020-07-30 16:40:15 +02:00 |
|
Miriam Baglioni
|
e623f12bef
|
refactoring
|
2020-07-30 16:32:59 +02:00 |
|
Miriam Baglioni
|
ff7d05abb4
|
added support class to store the couple organizationId representativeId gaot from sql query on hive
|
2020-07-30 16:32:04 +02:00 |
|
Miriam Baglioni
|
cf6d80b2ab
|
added command to close the writer
|
2020-07-30 16:31:22 +02:00 |
|
Miriam Baglioni
|
f985bca37b
|
added USER_CLAIM constant value
|
2020-07-30 16:25:26 +02:00 |
|
Claudio Atzori
|
4bbfcf1ac6
|
Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop
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2020-07-30 16:25:06 +02:00 |
|
Claudio Atzori
|
4ff8007518
|
added function to set the missing vocabulary names, used in the cleaning workflow as a pre-cleaning step
|
2020-07-30 16:24:39 +02:00 |
|
Miriam Baglioni
|
6f1c40a933
|
-
|
2020-07-30 16:24:28 +02:00 |
|
Miriam Baglioni
|
2b66a93f9e
|
added property file that was missing
|
2020-07-30 16:24:17 +02:00 |
|
Michele Artini
|
bdece15ca0
|
blacklist of nsprefix
|
2020-07-30 16:13:38 +02:00 |
Sandro La Bruzzo
|
c97c8f0c44
|
implemented new oozie job to extract entities in a separate dataset
|
2020-07-30 12:13:58 +02:00 |
|
Sandro La Bruzzo
|
3010a362bc
|
updated changing in the workflow of provision in the phase of aggregation. Removed serialization in JSON RDD and used spark Dataset
|
2020-07-30 09:25:56 +02:00 |
|
Sandro La Bruzzo
|
487226f669
|
Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop
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2020-07-30 09:25:39 +02:00 |