D-Net
/
dnet-hadoop
15
4
Fork 10
Code Issues 14 Pull Requests 10 Projects 2 Releases 1 Wiki Activity

enabled test

This commit is contained in:
Miriam Baglioni 2020-08-11 15:49:25 +02:00
parent 2d67476417
commit f31c2e9461
1 changed files with 38 additions and 67 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

105
dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/graph/ExtractRelationFromEntityTest.java
View File

@ -27,7 +27,6 @@ import eu.dnetlib.dhp.oa.graph.dump.community.CommunityMap;
import eu.dnetlib.dhp.schema.dump.oaf.graph.Relation;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
@Disabled
public class ExtractRelationFromEntityTest {
private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
@ -39,34 +38,6 @@ public class ExtractRelationFromEntityTest {
private static final Logger log = LoggerFactory
.getLogger(ExtractRelationFromEntityTest.class);
private static CommunityMap map = new CommunityMap();
static {
map.put("egi", "EGI Federation");
map.put("fet-fp7", "FET FP7");
map.put("fet-h2020", "FET H2020");
map.put("clarin", "CLARIN");
map.put("fam", "Fisheries and Aquaculture Management");
map.put("ni", "Neuroinformatics");
map.put("mes", "European Marine Scinece");
map.put("instruct", "Instruct-Eric");
map.put("rda", "Research Data Alliance");
map.put("elixir-gr", "ELIXIR GR");
map.put("aginfra", "Agricultural and Food Sciences");
map.put("dariah", "DARIAH EU");
map.put("risis", "RISI");
map.put("ee", "SDSN - Greece");
map.put("oa-pg", "EC Post-Grant Open Access Pilot");
map.put("beopen", "Transport Research");
map.put("euromarine", "Euromarine");
map.put("ifremer", "Ifremer");
map.put("dh-ch", "Digital Humanities and Cultural Heritage");
map.put("science-innovation-policy", "Science and Innovation Policy Studies");
map.put("covid-19", "COVID-19");
map.put("enrmaps", "Energy Research");
map.put("epos", "EPOS");
}
@BeforeAll
public static void beforeAll() throws IOException {
@ -97,43 +68,43 @@ public class ExtractRelationFromEntityTest {
spark.stop();
}
// @Test
// public void test1() {
//
// final String sourcePath = getClass()
// .getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/singelRecord_pub.json")
// .getPath();
//
// final String communityMapPath = getClass()
// .getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
// .getPath();
//
// Extractor ex = new Extractor();
// ex
// .run(
// false, sourcePath, workingDir.toString() + "/relation",
// // eu.dnetlib.dhp.schema.oaf.Publication.class, communityMapPath);
// eu.dnetlib.dhp.schema.oaf.Publication.class, map);
//
// final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
//
// JavaRDD<Relation> tmp = sc
// .textFile(workingDir.toString() + "/relation")
// .map(item -> OBJECT_MAPPER.readValue(item, Relation.class));
//
// org.apache.spark.sql.Dataset<Relation> verificationDataset = spark
// .createDataset(tmp.rdd(), Encoders.bean(Relation.class));
//
// Assertions
// .assertEquals(
// 9,
// verificationDataset.filter("source.id = '50|dedup_wf_001::15270b996fa8fd2fb5723daeab3685c3'").count());
//
// Assertions
// .assertEquals(
// 9,
// verificationDataset.filter("source.id = '50|dedup_wf_001::15270b996fa8fd2fb5723daxab3685c3'").count());
//
// }
@Test
public void test1() {
final String sourcePath = getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/singelRecord_pub.json")
.getPath();
final String communityMapPath = getClass()
.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
.getPath();
Extractor ex = new Extractor();
ex
.run(
false, sourcePath, workingDir.toString() + "/relation",
// eu.dnetlib.dhp.schema.oaf.Publication.class, communityMapPath);
eu.dnetlib.dhp.schema.oaf.Publication.class, communityMapPath);
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
JavaRDD<Relation> tmp = sc
.textFile(workingDir.toString() + "/relation")
.map(item -> OBJECT_MAPPER.readValue(item, Relation.class));
org.apache.spark.sql.Dataset<Relation> verificationDataset = spark
.createDataset(tmp.rdd(), Encoders.bean(Relation.class));
Assertions
.assertEquals(
9,
verificationDataset.filter("source.id = '50|dedup_wf_001::15270b996fa8fd2fb5723daeab3685c3'").count());
Assertions
.assertEquals(
9,
verificationDataset.filter("source.id = '50|dedup_wf_001::15270b996fa8fd2fb5723daxab3685c3'").count());
}
}