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4116 Commits

Author SHA1 Message Date
Claudio Atzori a72b9e96ac expand the instance level fulltext in the XML records 2023-07-27 14:57:38 +02:00
Claudio Atzori 270df939c4 partial implementation of the suggestions from https://support.openaire.eu/issues/8898 2023-07-25 17:29:50 +02:00
Giambattista Bloisi e64c2854a3 Refactor Dedup process to use Spark Dataframe API and intermediate representation with Row interface 
JsonPath cache contention fixed by using a ConcurrentHashMap
Blacklist filtering performance improvement
Minor performance improvements when evaluating similarity
Sorting in clustered elements is deterministic (by ordering and identity field, instead of ordering field only)
 2023-07-24 15:36:24 +02:00
Giambattista Bloisi bb5b845e3c Use scala.binary.version property to resolve scala maven dependencies 
Ensure consistent usage of maven properties
Profile for compiling with scala 2.12 and Spark 3.4
 2023-07-24 11:13:48 +02:00
Serafeim Chatzopoulos 3a0f09774a Add script to find score limits 2023-07-21 17:55:41 +03:00
Ilias Kanellos 06b9b71c4e Merge branch '8172_impact_indicators_workflow' of https://code-repo.d4science.org/D-Net/dnet-hadoop into 8172_impact_indicators_workflow 2023-07-21 17:42:49 +03:00
Ilias Kanellos 2374f445a9 Produce additional bip update specific files 2023-07-21 17:42:46 +03:00
Serafeim Chatzopoulos cb0f3c50f6 Format workflow.xml 2023-07-21 16:07:10 +03:00
Serafeim Chatzopoulos c64e5e588f Merge branch '8172_impact_indicators_workflow' of https://code-repo.d4science.org/D-Net/dnet-hadoop into 8172_impact_indicators_workflow 2023-07-21 15:27:02 +03:00
Serafeim Chatzopoulos 2cc5b1a39b Fixes in workflow.xml 2023-07-21 15:26:50 +03:00
Ilias Kanellos 0f96af5d56 Merge branch '8172_impact_indicators_workflow' of https://code-repo.d4science.org/D-Net/dnet-hadoop into 8172_impact_indicators_workflow 2023-07-21 13:42:35 +03:00
Ilias Kanellos 03da965162 Format bip-score based file without doi references 2023-07-21 13:42:30 +03:00
Giambattista Bloisi f03153823a Update testCitationRelations number of expected citations according to changes made in 0559d8b4 (monodirectional citations) 2023-07-21 10:48:28 +02:00
Giambattista Bloisi 54c1eacef1 SparkJobTest was failing because testing workingdir was not cleaned up after eact test 2023-07-21 10:42:24 +02:00
Giambattista Bloisi 5e15f20e6e Fix entityMerger that was excluding the authors of the first entity in the list to merge 2023-07-21 00:46:54 +02:00
Giambattista Bloisi 0210a14e43 Ignore timestamp differences in PromoteActionPayloadForGraphTableJobTest 2023-07-20 23:45:57 +02:00
Giambattista Bloisi dba34505de Fix SparkStatsTest bug where parquet tables were incorrectly read as text files leading to unpredictable count() values 2023-07-19 14:24:52 +02:00
Giambattista Bloisi e47ed1fdb2 Use DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES in json mapper to avoid that tests fail if they encounter unmapped properties 2023-07-19 14:21:40 +02:00
Serafeim Chatzopoulos db4ca43ee8 Resolve conflict 2023-07-18 18:38:26 +03:00
Serafeim Chatzopoulos be320ba3c1 Indentation fixes 2023-07-17 16:04:21 +03:00
dimitrispie be4856ef35 Update step15.sql 2023-07-17 15:33:58 +03:00
Serafeim Chatzopoulos bc1a4611aa Minor changes 2023-07-17 11:17:53 +03:00
dimitrispie 163b2ee2a8 Changes 
1. Monitor updates
2. Bug fixes during copy to impala cluster
 2023-07-13 15:25:00 +03:00
dimitrispie 76901a25f9 Updates Promotion DBs 
- Add a step for promoting the splitted monitor DBs
 2023-07-12 22:49:08 +03:00
Serafeim Chatzopoulos 4eba14a80e Add oozie workflow 2023-07-06 21:07:50 +03:00
Serafeim Chatzopoulos c2998a14e8 Add basic tests for affiliation relations 2023-07-06 20:28:16 +03:00
Serafeim Chatzopoulos bc7b00bcd1 Add bi-directional affiliation relations 2023-07-06 18:29:15 +03:00
Serafeim Chatzopoulos 12528ed2ef Refactor PrepareAffiliationRelations.java to use OafMapperUtils common functions 2023-07-06 18:08:33 +03:00
Serafeim Chatzopoulos bbc245696e Prepare actionsets for BIP affiliations 2023-07-06 15:56:12 +03:00
Ilias Kanellos 0c433eccdd Fix scores & Workflow 2023-07-06 15:06:28 +03:00
Ilias Kanellos d5c39a1059 Fix map scores to doi 2023-07-06 15:04:48 +03:00
Ilias Kanellos 772d5f0aab Make PR and AttRank serial 2023-07-06 13:47:51 +03:00
Giambattista Bloisi 801da2fd4a New sources formatted by maven plugin 2023-07-06 10:28:53 +02:00
Giambattista Bloisi bd3fcf869a rename dnet-pace-core into dhp-pace-core module and use it as dependency in other modules 2023-07-06 10:02:23 +02:00
Serafeim Chatzopoulos 347a889b20 Read affiliation relations 2023-07-06 00:51:01 +03:00
Miriam Baglioni 7738372125 [UsageCount] fixed typo in attribute name for datasource table 2023-06-30 18:56:41 +02:00
Sandro La Bruzzo 9963fd6d29 updated log to add subentity 2023-06-28 13:36:05 +02:00
Sandro La Bruzzo ed7e2ab6d1 reverted mistake on commit workflow.xml 2023-06-28 11:40:19 +02:00
Sandro La Bruzzo 9910ce06ae added to CreateSimRel the feature to write time log 2023-06-28 11:38:16 +02:00
Miriam Baglioni 2717edafb7 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2023-06-28 11:25:14 +02:00
Miriam Baglioni 2f04c9d149 [BulkTagging] fixing left over for test 2023-06-28 11:24:42 +02:00
Sandro La Bruzzo bd17c3edc8 added to CreateSimRel the feature to write time log 2023-06-28 11:20:58 +02:00
Serafeim Chatzopoulos 60f25b780d Minor fixes in workflow.xml and job.properties 2023-06-23 12:51:50 +03:00
Michele Artini 88a1cbc37d fixed a datasource id 2023-06-22 07:56:33 +02:00
Claudio Atzori b0ebf56367 Merge pull request 'Update step15_5.sql' (#314) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #314
 2023-06-21 10:33:22 +02:00
dimitrispie 2b6370eaee Update step15_5.sql 
Bug fix
 2023-06-21 11:31:10 +03:00
Claudio Atzori 35e42a86ed Merge pull request 'Update step15_5.sql' (#313) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #313
 2023-06-21 10:26:16 +02:00
dimitrispie 74cb060bfe Update step15_5.sql 
Add "if not exists" clause
 2023-06-21 11:24:06 +03:00
Claudio Atzori 85e016df17 Merge pull request 'Update step16-createIndicatorsTables.sql' (#312) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #312
 2023-06-21 09:52:33 +02:00
dimitrispie a475cfcb7b Update step16-createIndicatorsTables.sql 
Rename a field in indi_pub_interdisciplinarity
 2023-06-21 10:42:02 +03:00
Claudio Atzori 979cf9cd87 Merge pull request 'Update step15.sql' (#311) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #311
 2023-06-21 09:20:01 +02:00
dimitrispie 4648cd88d4 Update step15.sql 
Cast score to double
 2023-06-21 10:02:19 +03:00
dimitrispie 94d2573c77 Update step15.sql 
Bug Fix
 2023-06-21 09:22:39 +03:00
Claudio Atzori 0561362de2 Merge pull request 'Update step20-createMonitorDB_institutions.sql' (#309) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #309
 2023-06-20 15:07:09 +02:00
Claudio Atzori 50d7dc0078 [graph enrichment] fixed projectOrganizationPath not being passed to the apply_resulttoorganization_propagation node 2023-06-19 15:42:44 +02:00
Claudio Atzori fbd9bf704e indent 2023-06-19 15:41:22 +02:00
dimitrispie be2caedb04 Update step20-createMonitorDB_institutions.sql 
Add openorgs____::1624ff7c01bb641b91f4518539a0c28a Vrije Universiteit Amsterdam
 2023-06-19 12:12:17 +03:00
dimitrispie 36e0a8fec4 Changes to Promotion Stats WF 
1. Add new cluster host at impala-shell commands
2. Add a step for splitting monitor dbs
3. Update workflow.xml to included the new splitting monitor dbs step
 2023-06-19 09:44:34 +03:00
dimitrispie 4c770a5e29 Update finalizeImpalaCluster.sh 
Drop views in shadow dbs before dropping the db
 2023-06-15 13:25:37 +03:00
dimitrispie e06d962a6a Update step15.sql 2023-06-15 12:20:35 +03:00
dimitrispie afcad08396 Update step20-createMonitorDB_institutions.sql 
Added openorgs____::c0b262bd6eab819e4c994914f9c010e2   -- National Institute of Geophysics and Volcanology
 2023-06-15 10:28:49 +03:00
Claudio Atzori b9748763e2 Merge pull request '[stats wf] Bug fixes' (#308) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #308
 2023-06-14 21:57:03 +02:00
dimitrispie 42b8ce2ba4 Update copyDataToImpalaCluster.sh 2023-06-14 19:23:42 +03:00
dimitrispie 2032b0df40 Bug fixes 
1. Remove tables/views from old databases in the new cluster, before dropping the dbs
2. Fix id in result_accessroute, indi_impact_measures, indi_pub_bronze_oa
 2023-06-14 19:09:09 +03:00
Claudio Atzori b76a47b103 [aggregator graph] added column alias when mapping organization PIDs from the OpenOrgs database 2023-06-13 11:38:10 +02:00
Claudio Atzori ad04f14b81 Merge branch 'beta' into distinct_pids_from_openorgs_beta 2023-06-12 09:58:21 +02:00
Claudio Atzori 55f002f1e9 Merge branch 'beta' into propagationProjectThroughParentChils 2023-06-12 09:56:53 +02:00
Claudio Atzori 4b00a76271 Merge branch 'beta' into fulltext_url_validation 2023-06-12 09:55:25 +02:00
Claudio Atzori de225c71cd Merge branch 'beta' into removeTaggingCondition 2023-06-12 09:50:40 +02:00
Claudio Atzori e1409ffe80 update sql query to return distinct pids 2023-06-12 09:47:45 +02:00
Claudio Atzori da7b66c542 Merge pull request '[stats wf] Added memory to hive' (#305) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #305
 2023-06-08 08:58:48 +02:00
dimitrispie c5f42c7f5b Added memory to hive 2023-06-07 18:18:23 +03:00
Claudio Atzori afb76ebf0f Merge pull request '[stats wf] Bug fix on indicators step' (#304) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #304
 2023-06-07 16:49:09 +02:00
dimitrispie fa24e2e18f Bug fix on indicators step 
indi_pub_gold_oa table was missing during the creation of other indicators
 2023-06-07 17:43:37 +03:00
Claudio Atzori 01c67e697d Merge pull request '[ stats wf] Bug fix' (#303) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #303
 2023-06-07 14:41:44 +02:00
dimitrispie 28272c1b0e Bug fix 2023-06-07 15:34:01 +03:00
Alessia Bardi d5be6a13e9 Updated officialnmae of pangaea in hostedbymap for Datacite to avoid duplicate entries in the source filter of the portal 2023-06-06 14:43:32 +02:00
Claudio Atzori 8f651f1225 Merge pull request 'Changes to beta stats wf' (#300) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #300
 2023-06-06 11:41:36 +02:00
dimitrispie ad07fbf053 Add names to organizations for collaboration indicators 2023-06-02 14:13:10 +03:00
dimitrispie 2324670714 Split Monitor DBs-Interdisciplinarity indicators 
- Split DBs Monitor for faster rendering of visualizations
- Add interdisciplinarity indicators from result_fos
 2023-06-02 13:34:16 +03:00
Miriam Baglioni daf4d7971b refactoring 2023-05-31 18:56:58 +02:00
Miriam Baglioni 97d72d41c3 finalization of implementation and testing 2023-05-31 18:53:22 +02:00
Miriam Baglioni 0389b57ca7 added propagation for project to organization 2023-05-31 11:06:58 +02:00
Claudio Atzori e45777e7e1 [aggregator graph] added validation for URLs mapped from oaf:fulltext 2023-05-26 11:33:42 +02:00
dimitrispie ebe586b1d1 Impact indicators/Unpaywall 
- Added Impact indicators
- Added unpaywall open access colours
 2023-05-26 10:25:28 +03:00
dimitrispie d6102dd576 Update step16-createIndicatorsTables.sql 
- Add org names to indi_project_collab_org
- Add indi_pub_bronze_oa
 - Changes to indi_pub_hybrid_oa_with_cc
 2023-05-25 14:52:34 +03:00
Miriam Baglioni 9097e71853 Added assertion in test 2023-05-24 16:30:53 +02:00
Miriam Baglioni 9567c13bc3 refactoring 2023-05-24 16:20:05 +02:00
Miriam Baglioni 34172455d1 [BulkTag] Adding remove constraints to specify when a community must not appear in the context of a result. 2023-05-24 09:56:23 +02:00
Ilias Kanellos a1b9187039 Fix syntax error on workflow.xml 2023-05-23 17:17:12 +03:00
Ilias Kanellos 6a7e370a21 Remove unnecessary counts in graph creation 2023-05-23 16:48:58 +03:00
Ilias Kanellos ec4e010687 End after rankings | Create graph debugged 2023-05-23 16:44:04 +03:00
Claudio Atzori a235d2a24a Merge pull request 'Updates to steps related to transfer data to impala cluster' (#295) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #295
 2023-05-18 08:46:15 +02:00
dimitrispie 86f4f63daf Updates to steps related to transfer data to impala cluster 
1. Remove external table definitions in stats_ext
2. Fix the issue where some views are not created.
3. Added two workflow parameters for copying also the usage stats dbs
 2023-05-18 09:33:05 +03:00
Claudio Atzori 909729a2fc [dedup] tweaking num partitions, minor changes 2023-05-17 10:16:22 +02:00
Ilias Kanellos 38020e242a Merge branch '8172_impact_indicators_workflow' of https://code-repo.d4science.org/D-Net/dnet-hadoop into 8172_impact_indicators_workflow 2023-05-16 17:34:53 +03:00
Ilias Kanellos 3d69f33c84 Fix selection of columns in graph creation 2023-05-16 17:34:42 +03:00
Ilias Kanellos 3c38f7ba6f Fix selection of columns in graph creation 2023-05-16 17:32:53 +03:00
Serafeim Chatzopoulos 8ef718c363 Fix workflow application path 2023-05-16 16:28:48 +03:00
Serafeim Chatzopoulos 26328e2a0d Move job.properties 2023-05-16 14:39:53 +03:00
Serafeim Chatzopoulos 4eec3e7052 Add jobTracker, nameNode && spark2Lib as global params in oozie wf 2023-05-15 22:28:48 +03:00
Serafeim Chatzopoulos b83135c252 Add missing kill nodes in workflow.xml 2023-05-15 19:55:35 +03:00
Serafeim Chatzopoulos 45f2aa0867 Move end node ... at the end in workflow.xml 2023-05-15 17:52:20 +03:00
Claudio Atzori 8acad52a0c Merge branch 'beta' into apc_affiliation 2023-05-15 15:47:33 +02:00
Claudio Atzori 8a463cc3e8 fixed organization id created when mapping APC affiliations. Factored out ROR constants in dhp-common 2023-05-15 15:44:46 +02:00
Serafeim Chatzopoulos 12a57e1f58 Resolve conflicts 2023-05-15 16:20:11 +03:00
Serafeim Chatzopoulos 82e2a96f51 Resolve conflicts 2023-05-15 15:53:12 +03:00
Serafeim Chatzopoulos b8e8c959fe Update workflow.xml && job.properties 2023-05-15 15:50:23 +03:00
Ilias Kanellos 4a905932a3 Spark properties from job.properties 2023-05-15 15:24:22 +03:00
Claudio Atzori 0c314d5e09 Merge pull request 'Update copyDataToImpalaCluster.sh' (#293) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #293
 2023-05-15 12:05:54 +02:00
Serafeim Chatzopoulos 07818131ef Update documentation 2023-05-15 13:04:44 +03:00
dimitrispie b3f9633205 Update copyDataToImpalaCluster.sh 
Added option --user to impala-shell command
 2023-05-15 12:51:44 +03:00
Miriam Baglioni 78b07400c0 changed test classes 2023-05-15 11:37:08 +02:00
Miriam Baglioni 86fe886c1a removed the inverse of the Citing relation 2023-05-15 11:20:51 +02:00
Ilias Kanellos 1788ac2d4d Correct filtering for MAG records 2023-05-12 12:55:43 +03:00
Miriam Baglioni 12cd179d2d Merge pull request 'Update copyDataToImpalaCluster.sh' (#291) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #291
 2023-05-12 11:36:34 +02:00
dimitrispie 00d0d162b6 Update copyDataToImpalaCluster.sh 
Added a temporary folder to copy the files to avoid permission issues
 2023-05-12 12:31:13 +03:00
Ilias Kanellos 5ddbb4ad10 Spark properties no longer hardcoded 2023-05-11 15:36:47 +03:00
Ilias Kanellos 3de35fd6a3 Produce 5 classes of ranking scores 2023-05-11 14:42:25 +03:00
Miriam Baglioni 8c05f49665 moved the version as it was before the change 2023-05-09 10:48:34 +02:00
Miriam Baglioni 99ac5bab46 added check to avoid NPE when checking the organization country 2023-05-04 19:38:39 +02:00
Claudio Atzori 0704e186f6 Merge pull request 'Stats wf executed on hive only' (#283) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #283
 2023-05-02 14:05:12 +02:00
Claudio Atzori d8882c4481 extended mapping applied to datacite records to produce affiliations using the ROR ids. Inc ase of APCs it includes the amount and the currently in the relation 2023-05-02 11:56:51 +02:00
dimitrispie c3d58e58e1 Bug fixes 2023-05-02 11:54:07 +03:00
Claudio Atzori abd7ca0c18 Merge branch 'beta' into bulkTagRefactor 2023-05-02 10:50:01 +02:00
Claudio Atzori 45f625d14f Merge branch 'beta' into organizationToRepresentative 2023-05-02 10:46:55 +02:00
Claudio Atzori de11edca98 Merge branch 'beta' into organizationToRepresentative 2023-05-02 09:59:41 +02:00
Claudio Atzori 851f664bd9 Merge branch 'beta' into graph_cleaning_refactoring 2023-05-02 09:55:40 +02:00
dimitrispie e57ecdaf98 Update step20-createMonitorDB.sql 
Add University of Manitoba
 2023-04-30 17:52:23 +03:00
Ilias Kanellos 90332439ad Remove deletion of synonym folder 2023-04-28 13:45:19 +03:00
Ilias Kanellos a98da54896 Merge branch '8172_impact_indicators_workflow' of https://code-repo.d4science.org/D-Net/dnet-hadoop into 8172_impact_indicators_workflow 2023-04-28 13:23:49 +03:00
Ilias Kanellos 09485fbee3 Fixed unicode bug. Workflow ends after first script 2023-04-28 13:09:13 +03:00
Serafeim Chatzopoulos 614cc1089b Add separate forder for results && project actionsets 2023-04-27 12:37:15 +03:00
Serafeim Chatzopoulos 815a4ddbba Add actionset creation for project bip indicators in workflow 2023-04-26 20:40:06 +03:00
Serafeim Chatzopoulos ee04cf92bf Add actionsets for project impact indicators 2023-04-26 20:23:46 +03:00
dimitrispie fdb5d2b39f Bug fixes 2023-04-23 18:29:00 +03:00
dimitrispie 53ce023035 Bug fixes 2023-04-23 18:23:45 +03:00
dimitrispie 4fa750b719 Bug fixes on monitor-update 2023-04-19 17:39:53 +03:00
dimitrispie 5247cb7115 Bug fix 2023-04-19 11:11:19 +03:00
Miriam Baglioni efc4f6a658 [bulkTag] refactor to enrich each result single step 2023-04-18 17:39:31 +02:00
Serafeim Chatzopoulos 23f58a86f1 Change jar param in project impact indicators action 2023-04-18 12:26:01 +03:00
Miriam Baglioni 697a134504 - 2023-04-18 10:21:12 +02:00
Miriam Baglioni 6cc95c96a2 - 2023-04-18 09:53:11 +02:00
dimitrispie 25dafccc24 Merge branch 'hive' into beta 2023-04-12 11:36:59 +03:00
Claudio Atzori a2dcb06daf added eoscifguidelines in the result view; removed compute statistics statements 2023-04-11 10:43:32 +02:00
Serafeim Chatzopoulos 7256c8d3c7 Add script for aggregating impact indicators at the project level 2023-04-07 16:30:12 +03:00
dimitrispie c85de8fa1f -Added Technological University Dublin 
-Added project_organization_contribution table
-Add   Delft University of Technology
 2023-04-07 09:22:59 +03:00
dimitrispie 9b41dff33c Update step20-createMonitorDB.sql 
Added Delft University of Technology
 2023-04-07 09:21:38 +03:00
Miriam Baglioni 932d07d2dd [bulkTag] added filtering for datasources in eosctag 2023-04-06 15:08:27 +02:00
Miriam Baglioni 287753417d better implementation for the fix 2023-04-06 12:22:38 +02:00
Miriam Baglioni b42abc9904 fixed issue on bulktagging for the advanced constraints 2023-04-06 12:15:00 +02:00
dimitrispie 91e18ac7f4 Added project_organization_contribution table 2023-04-06 10:53:11 +03:00
Miriam Baglioni b25b401065 added test to verify the advconstraints to dth community. inserted some additional logs. 2023-04-05 12:18:39 +02:00
Claudio Atzori 864f4051d3 [graph cleaning] added missing case 2023-04-05 11:35:47 +02:00
Claudio Atzori dead87917f [graph cleaning] cleanup 2023-04-04 13:13:43 +02:00
Claudio Atzori 2a6ba29b64 [graph cleaning] unit tests & cleanup 2023-04-04 12:34:51 +02:00
dimitrispie 9e1335df4c -Added Technological University Dublin 
-Added project_organization_contribution table
 2023-04-04 13:22:40 +03:00
Claudio Atzori 63b8bbc015 [graph to Solr] using dedicated sparkExecutorCores, sparkExecutorMemory, sparkDriverMemory in convert_to_xml 2023-03-24 13:43:20 +01:00
Claudio Atzori b502f86523 fixed input path supplemented to GetDatasourceFromCountry; adjusted the various spark.sql.shuffle.partitions 2023-03-24 13:09:12 +01:00
Claudio Atzori c07857fa37 [graph cleaning] unit tests & cleanup 2023-03-23 15:57:47 +01:00
Claudio Atzori 90e61a8aba [graph cleaning] WIP: refactoring of the cleaning stages, unit tests 2023-03-23 15:03:26 +01:00
Claudio Atzori 308e10d102 serialising: 1. measures for all the entity types and 2. result level fulltext 2023-03-23 11:23:22 +01:00
Claudio Atzori 488d9a5eaa [graph cleaning] WIP: refactoring of the cleaning stages, unit tests 2023-03-23 10:41:13 +01:00
dimitrispie fad7fa4af8 Added Technological University Dublin 2023-03-22 09:44:00 +02:00
Serafeim Chatzopoulos 102aa5ab81 Add dependency to dhp-aggregation 2023-03-21 19:25:29 +02:00
Serafeim Chatzopoulos 3e8a4cf952 Rearrange resources folder structure 2023-03-21 18:25:55 +02:00
Serafeim Chatzopoulos f992ecb657 Checkout BIP-Ranker during 'prepare-package' && add it in the oozie-package.tar.gz 2023-03-21 18:03:55 +02:00
Ilias Kanellos 9dc8f0f05f Add ActionSet step 2023-03-21 16:14:15 +02:00
Claudio Atzori 4f5ba0ed52 [graph cleaning] WIP: refactoring of the cleaning stages, unit tests 2023-03-21 14:41:20 +01:00
Ilias Kanellos b5c252865c Add filtering based on citation source 2023-03-20 15:38:36 +02:00
Claudio Atzori 6d3d18d8b5 [graph cleaning] WIP: refactoring of the cleaning stages 2023-03-16 17:23:36 +01:00
dimitrispie 43b23a9bf3 Update step20-createMonitorDB.sql 
Added Technological University Dublin
 2023-03-15 09:57:12 +02:00
Serafeim Chatzopoulos 720fd19b39 Add dhp-impact-indicators workflow files 2023-03-14 19:28:27 +02:00
Serafeim Chatzopoulos c6e39b7f33 Add dhp-impact-indicators 2023-03-14 18:50:54 +02:00
Claudio Atzori 518618f1a9 [graph cleaning] avoid to overwrite the subject class to 'keyword' for those with provenance 'subject:fos' 2023-03-14 15:22:47 +01:00
Claudio Atzori 41e00bcd07 [graph provision] avoid to parse again the XML records, apparently the escaped XML characters get unescaped invalidating the record 2023-03-13 15:19:49 +01:00
Claudio Atzori 24e2fd828b code formatting 2023-03-08 21:17:08 +01:00
Claudio Atzori e28d395e87 [aggregator graph] using dedicated path to sync claims, adjusted paths with wildcards 2023-03-08 21:16:52 +01:00
Claudio Atzori 5b8fd37314 [aggregator graph] using dedicated path to sync claims 2023-03-08 15:28:14 +01:00
Claudio Atzori 7fd89566c2 [aggregator graph] handle paths including wildcards 2023-03-08 12:43:00 +01:00
Miriam Baglioni 588aca5ce4 Merge pull request 'h2020classification' (#280) from h2020classification into beta 
Reviewed-on: #280
 2023-03-03 09:29:10 +01:00
Claudio Atzori 8ec0d62d91 pre-group the records in each table before joning the contents from BETA and PROD together 2023-03-02 14:49:19 +01:00
Miriam Baglioni 0fff98a14c [ECclassification] removed print 2023-03-02 11:46:57 +01:00
Miriam Baglioni b0c2f7e526 [ECclassification] removed not needed resources 2023-03-02 11:44:48 +01:00
Miriam Baglioni d4fc62c2f6 mergin with branch beta 2023-03-02 11:14:54 +01:00
Miriam Baglioni de8ad1caef [ECclassification] new implementation for the H2020 classification 2023-03-02 11:14:03 +01:00
Claudio Atzori db9dad4aa7 [actionmanager] increased spark.sql.shuffle.partitions for publication, dataset, relation records 2023-03-02 09:11:37 +01:00
Miriam Baglioni c1f9848953 [ECclassification] added new classes 2023-03-01 15:29:11 +01:00
Claudio Atzori 6f488547a7 ignore non processable records 2023-03-01 14:49:51 +01:00
Claudio Atzori 7d263f265e adjusted logs 2023-03-01 11:58:07 +01:00
Claudio Atzori 16ad42e8f3 code formatting 2023-03-01 10:22:13 +01:00
Claudio Atzori 9c59dac859 followup changes reorganising the mdstore synchronisation mechanism 2023-03-01 10:16:20 +01:00
Miriam Baglioni ad745c0aa3 [CrossrefFunderMapping] fixed issueson funder name 2023-02-28 14:58:27 +01:00
Miriam Baglioni 4f2df876cd [ECclassification] new implementation first try 2023-02-28 14:44:00 +01:00
Claudio Atzori 2f7346e9cf WIP monodirectional citations, Datacite 2023-02-28 13:30:51 +01:00
Claudio Atzori 0559d8b412 WIP monodirectional citations 2023-02-28 10:57:32 +01:00
Sandro La Bruzzo 69fa616490 removed wrong content 2023-02-28 10:27:38 +01:00
Sandro La Bruzzo 832a75d012 added mapping for crossref funder 2023-02-28 10:16:34 +01:00
Sandro La Bruzzo 78e51c182a Added missing parametero to raw all workflow 2023-02-28 10:16:01 +01:00
Claudio Atzori 7aebedb43c code formatting 2023-02-27 11:51:27 +01:00
Miriam Baglioni 80987801d7 [FoS] added check for null on level1 subject 2023-02-27 11:40:22 +01:00
Claudio Atzori 31e97c2a6b [unresolved entities] updated oozie wf node labels 2023-02-27 11:38:29 +01:00
Miriam Baglioni 23112929e9 [FoS] changed the default separator from comma to tab to solve the issue in subject value split 2023-02-27 10:18:39 +01:00
Serafeim Chatzopoulos 0b5bf53b45 Remove unecessary indexed fields from Solr 2023-02-23 12:42:42 +02:00
dimitrispie 1547611246 Merge branch 'beta' into hive 2023-02-22 16:57:12 +02:00
Michele Artini fddcf701e9 updated the order of the compatibilities 2023-02-22 12:07:09 +01:00
Claudio Atzori 0c1be41b30 code formatting 2023-02-22 10:15:25 +01:00
Claudio Atzori 99cd7761aa cleanup of non necessary dhp-monitor-update workflow 2023-02-22 10:10:22 +01:00
Claudio Atzori cd3a51a15f Merge branch 'beta' into 8232-mdstore-synch-improve 2023-02-22 09:57:07 +01:00
Claudio Atzori 477a7c416f Merge branch 'beta' into UsageCountOnProjectAndDatasource 2023-02-22 09:55:51 +01:00
Claudio Atzori c20c1c9159 Merge pull request 'Added 4 institutions:' (#261) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #261
 2023-02-22 09:53:45 +01:00
Miriam Baglioni d617c3e812 [DOIBoost] extended mapping for funder #8407 2023-02-20 14:45:27 +01:00
dimitrispie 90807b60c7 Changes to monitor wf 2023-02-20 10:42:24 +02:00
dimitrispie d2f9ccf934 Changes to separate monitor wf 2023-02-20 10:41:21 +02:00
dimitrispie 032a401cbf Bug fixes 2023-02-20 09:29:20 +02:00
Miriam Baglioni 016337a0f9 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2023-02-16 15:54:59 +01:00
Sandro La Bruzzo 118c1fc3b3 Merge remote-tracking branch 'origin/beta' into beta 2023-02-15 10:29:28 +01:00
Sandro La Bruzzo a8ac79fa25 Added citation relation on crossref Mapping 2023-02-15 10:29:13 +01:00
dimitrispie 595192d510 Bug fix 2023-02-14 16:24:08 +02:00
dimitrispie f3aaff3688 Remove duplicate orgs 2023-02-14 09:48:36 +02:00
Claudio Atzori 9a03f71db1 code formatting 2023-02-13 16:25:47 +01:00
Michele Artini 554df257ab null values in date range conditions 2023-02-13 16:15:32 +01:00
dimitrispie 3400133c2f Bug fix 2023-02-13 09:44:00 +02:00
dimitrispie 935db0ab25 Added organizations for Monitor 2023-02-13 09:29:09 +02:00
dimitrispie 7b78b15c81 Changes for copying to Impala Cluster 2023-02-13 09:27:00 +02:00
Miriam Baglioni 5cf902a2b0 [UsageCount] changed query to make the sum be computed via sql instead of grouping 2023-02-10 16:16:37 +01:00
Miriam Baglioni f803530df6 [UsageCount] fixed query 2023-02-10 15:50:56 +01:00
Miriam Baglioni bb5bba51b3 [UsageCount] extended test 2023-02-09 19:08:30 +01:00
Miriam Baglioni 85e53fad00 [UsageCount] addition of usagecount for Projects and datasources. Extention of the action set created for the results with new entities for projects and datasources. Extention of the resource set and modification of the testing class 2023-02-09 18:59:45 +01:00
dimitrispie d71f5672d3 Add monitor post step 2023-02-09 13:44:14 +02:00
dimitrispie 35ba8bb328 Bug fixes 2023-02-09 12:57:57 +02:00
Sandro La Bruzzo 8920932dd8 Code formatted 2023-02-08 11:34:18 +01:00
Sandro La Bruzzo 0b9819f1ab Code formatted 2023-02-08 10:32:33 +01:00
Sandro La Bruzzo 6c81a161d2 Merge remote-tracking branch 'origin/beta' into 8231-mdstore-synch-improve 2023-02-08 10:29:09 +01:00
dimitrispie 3ba11d64a1 Changes 07022023 2023-02-07 12:53:51 +02:00
dimitrispie 98c34263ed Update step20-createMonitorDB.sql 
Add University of Cape Town organization
 2023-02-07 08:14:48 +02:00
dimitrispie 2dc6d47270 Changes 06022023 2023-02-06 13:18:53 +02:00
dimitrispie 973d78a4d6 Update step15_5.sql 
Added unpaywalls open access colors
 2023-02-02 08:03:54 +02:00
Claudio Atzori d05ca53a14 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2023-01-31 14:39:53 +01:00
Miriam Baglioni e82e009b46 added missing close tag for XML produced by the xquery to get information for the community from the IS 2023-01-31 10:19:34 +01:00
Miriam Baglioni b254a0375f [Affiliation from institutionalrepo] changed the field to check to verify the datasource type. Now it is in the field jurisdiction 2023-01-26 16:51:20 +01:00
dimitrispie cf58e4a5e4 Added Arts et Métiers ParisTech 2023-01-25 16:03:16 +02:00
dimitrispie db7d625ba9 Addedd Arts et Métiers ParisTech organization 2023-01-25 12:22:21 +02:00
Claudio Atzori 505867bce9 [bulk tagging] better node naming 2023-01-20 16:13:16 +01:00
Miriam Baglioni ecd398fe51 refactoring 2023-01-20 14:23:45 +01:00
Miriam Baglioni 0a5c6010b0 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2023-01-13 16:14:46 +01:00
dimitrispie 4d7553c9f1 Bug fixes 2023-01-12 17:19:19 +02:00
dimitrispie dd70c32ad7 Bug fixes 2023-01-12 17:18:05 +02:00
dimitrispie 51f7ab5864 Bug fixes 2023-01-12 17:15:06 +02:00
dimitrispie 34d4bf727c Bug fixes 2023-01-12 11:28:37 +02:00
dimitrispie 43f6d4f296 -Monitor DB workflow 2023-01-12 11:26:47 +02:00
dimitrispie 686580a220 - New Monitor DB workflow 
- New Organization added
 2023-01-12 11:18:03 +02:00
Claudio Atzori 0a58bc7ba7 [broker] prevent NPEs 2023-01-11 14:44:14 +01:00
Claudio Atzori 04cb96001c [broker] d40e20f437 adapted to the beta graph model 2023-01-11 10:10:12 +01:00
Michele Artini 91b845f611 Considering instance pids and alteternative identifiers 2023-01-11 09:58:54 +01:00
Miriam Baglioni 1f367122e4 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2023-01-11 09:47:44 +01:00
Michele Artini 7b7520850b fixed an invalid char 2023-01-11 09:22:18 +01:00
Miriam Baglioni d6895f0387 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2023-01-09 17:28:38 +01:00
dimitrispie becb242c17 Monitor DB only Workflow 2023-01-04 16:50:29 +02:00
dimitrispie dcb958e146 Changes to execute the stats wf only in hive 2023-01-04 11:39:01 +02:00
dimitrispie 592013d5dd Added more steps in decision node 2022-12-23 09:43:16 +02:00
dimitrispie 2a4bf32d4c Merge branch 'hive' of https://code-repo.d4science.org/antonis.lempesis/dnet-hadoop into hive 
# Conflicts:
#	dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step10.sql
#	dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step13.sql
#	dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step14.sql
#	dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16_1-definitions.sql
#	dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step7.sql
 2022-12-22 10:22:46 +02:00
dimitrispie 6449ff4207 1. Added a decision node to enables the workflow to make a selection on the execution path to follow 
2. Added new organization
3. Added 5 new tables from Eurostast
 2022-12-22 10:18:21 +02:00
Miriam Baglioni 8893389895 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2022-12-21 12:42:27 +01:00
Antonis Lempesis c8309fe18e addded command line params to allow hive actions to run 2022-12-21 12:41:33 +02:00
Antonis Lempesis 028873cc51 added new hive opts 2022-12-21 12:41:33 +02:00
Antonis Lempesis 1ddea4f442 removed 'stored as parquet' from views.. 2022-12-21 12:41:33 +02:00
Antonis Lempesis 2754c3dd62 moving data to impala cluster and creating shadow databases there 2022-12-21 12:41:29 +02:00
Antonis Lempesis 778a1a724f finished migration to hive only 2022-12-21 12:41:25 +02:00
Antonis Lempesis e84dd5fe26 first 2022-12-21 12:41:23 +02:00
Sandro La Bruzzo 3c9826f186 updated lines function to it's implementation linesWithSeparators.map(l => l.stripLineEnd) in this way we force scala plugin compiler to consider this pipeline scala code and not java.string.lines() pipeline 2022-12-21 11:21:17 +01:00
Claudio Atzori 6aa91204a5 [orcid propagation] skip empty directories 2022-12-20 14:15:46 +01:00
Miriam Baglioni 6674cccb94 [BulkTag] description of parameters more comprehensive for those who do not implement it 2022-12-16 15:33:20 +01:00
Miriam Baglioni f37113a941 [BulkTag] moving xquery to get community configuration in dedicated file 2022-12-16 15:32:26 +01:00
Miriam Baglioni 8685eaa706 [Clean Country] added test to verify remove of country 2022-12-16 15:31:25 +01:00
Miriam Baglioni dc0ec88a58 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2022-12-16 13:18:32 +01:00
Miriam Baglioni d791840b82 [Clean Country] added test to verify remove of country: 2022-12-16 13:18:29 +01:00
Claudio Atzori 7b80b24f82 [cleaning] country cleaning must use both PID and AlternateIdentifier fields 2022-12-15 14:49:04 +01:00
Claudio Atzori b8bafab8a0 [cleaning] improved vocabulary based mapping, specialization for the strict vocab cleaning 2022-12-12 14:43:03 +01:00
Sandro La Bruzzo 5e4866d033 implemented synch for single mdstore 2022-12-12 11:29:46 +01:00
Claudio Atzori c18b8048c3 [cleaning] avoid NPE 2022-12-10 11:41:38 +01:00
Claudio Atzori 8b44afe5e5 [cleaning] avoid NPE 2022-12-09 15:44:57 +01:00
Claudio Atzori 389dd25430 [cleaning] avoid NPE 2022-12-08 18:40:48 +01:00
Claudio Atzori 730228d73d [cleaning] align wf parameter names in test 2022-12-08 18:40:22 +01:00
Claudio Atzori 2094fa6db0 [cleaning] align wf parameter names 2022-12-08 17:22:26 +01:00
Miriam Baglioni a485a94956 [Cleaning] fixed parameter name in property file 2022-12-08 16:59:34 +01:00
Miriam Baglioni 3d99b78d94 [Cleaning] fixed error in parameter (workingPath to workingDir) 2022-12-08 10:25:02 +01:00
Claudio Atzori 1b8488976b code formatting 2022-12-07 10:45:38 +01:00
Claudio Atzori cd1b58483e [bulk tag] fixed Community configuration parsing to void NPE 2022-12-07 10:39:00 +01:00
Claudio Atzori 062abfd669 fixed NPE, removed unused stuff 2022-12-06 12:04:00 +01:00
dimitrispie 2a52a42169 Added 4 institutions: 
-University of Modena and Reggio Emilia
-Bilkent University
-Saints Cyril and Methodius University of Skopje
-University of Milan
 2022-12-06 10:10:21 +02:00
Claudio Atzori 8248da40d9 Merge branch 'beta' into graph_cleaning 2022-12-02 14:49:00 +01:00
Claudio Atzori ddf065756f Merge pull request 'Two organizations are added for monitor' (#258) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #258
 2022-12-02 14:45:27 +01:00
Sandro La Bruzzo 5a48a2fb18 implemented synch for single mdstore 2022-12-01 11:34:43 +01:00
Claudio Atzori a38116546d Merge branch 'beta' into deduptesting 2022-11-30 11:27:29 +01:00
Miriam Baglioni ce020f2c83 [EOSC FUTURE] added resources and test for review 2022-11-30 09:57:30 +01:00
Miriam Baglioni bb0ddc1c44 [BulkTag] adding verb starts_with 2022-11-30 09:56:24 +01:00
Claudio Atzori 8e3edba318 [graph cleaning] testing the collectedfron and hostedby patch procedure 2022-11-29 16:07:09 +01:00
Claudio Atzori 58c05731f9 [graph cleaning] WIP: testing the collectedfron and hostedby patch procedure 2022-11-29 11:21:51 +01:00
Miriam Baglioni 9c70c5dbd6 [Bulk Tag horizontal] added new path in definition of constraint (to recognize fos subjects) - changed test and resource class to test this new aspect 2022-11-28 14:51:20 +01:00