[EOSC FUTURE] added resources and test for review
This commit is contained in:
parent
bb0ddc1c44
commit
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@ -142,6 +142,26 @@ public class IndexRecordTransformerTest {
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testRecordTransformation(record);
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}
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@Test
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public void testForEOSCFutureZenodo7353841() throws IOException, TransformerException {
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final String record = IOUtils
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.toString(getClass().getResourceAsStream("eosc-future/zenodo7353841.xml"));
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testRecordTransformation(record);
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}
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@Test
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public void testForEOSCFutureZenodo7351393() throws IOException, TransformerException {
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final String record = IOUtils
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.toString(getClass().getResourceAsStream("eosc-future/zenodo7351393.xml"));
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testRecordTransformation(record);
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}
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@Test
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public void testForEOSCFutureZenodo7351221() throws IOException, TransformerException {
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final String record = IOUtils
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.toString(getClass().getResourceAsStream("eosc-future/zenodo7351221.xml"));
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testRecordTransformation(record);
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}
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@Test
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void testDoiUrlNormalization() throws MalformedURLException {
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@ -0,0 +1,99 @@
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<record>
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<result xmlns:dri="http://www.driver-repository.eu/namespace/dri"
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xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
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<header>
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<dri:objIdentifier>doi_________::9cb0664d4c891c4baaf73f007c0c9de0</dri:objIdentifier>
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<dri:dateOfCollection>2022-11-25T12:55:13Z</dri:dateOfCollection>
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<dri:status>under curation</dri:status>
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<counters />
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</header>
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<metadata>
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<oaf:entity xmlns:oaf="http://namespace.openaire.eu/oaf"
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xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
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xsi:schemaLocation="http://namespace.openaire.eu/oaf http://namespace.openaire.eu/oaf http://www.openaire.eu/schema/0.2/oaf-0.2.xsd">
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<oaf:result>
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<title classid="main title" classname="main title" schemeid="dnet:dataCite_title" schemename="dnet:dataCite_title">COVID-19 Knowledge Graph: A semantic resource embedding biological and chemical entities</title>
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<creator rank="1" name="" surname="">Karki, Reagon</creator>
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<dateofacceptance />
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<resulttype classid="software" classname="software" schemeid="dnet:result_typologies" schemename="dnet:result_typologies" />
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<language classid="" classname="" schemeid="dnet:languages" schemename="dnet:languages" />
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<description><p>A Knowledge graph representation of compounds and associated biological entities in the BY-COVID and EOSC Future project.</p> <p><strong>Current status</strong></p> <ul> <li>Number of Nodes: 35952</li> <li>Number of Edges: 279462</li> <li>Human Proteins: 1347</li> <li>Assay: 15835</li> <li>Chemical/Compound: 4096</li> <li>Mechanism of Action: 739</li> <li>Pathway: 1513</li> <li>Disease: 1585</li> <li>SideEffect: 7420</li> <li>Biological Process: 2085</li> <li>Molecular Function: 1332</li> </ul> <p>Please check the BY_COVID_update_August.ipynb for understanding step wise process of KG generation and KG statistics. The KG has been exported to formats such as graphml, sif and so on for visualizations in other platforms. For example, the graphml file can be imported to Cytoscape directly. These files are located in 'data\export' folder.</p> <p></p></description>
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<country classid="" classname="" schemeid="" schemename="" />
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<subject classid="" classname="" schemeid="" schemename="" />
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<relevantdate classid="" classname="" schemeid="" schemename="" />
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<publisher>Zenodo</publisher>
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<embargoenddate />
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<journal issn="" eissn="" lissn="" ep="" iss="" sp="" vol="" />
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<source />
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<fulltext />
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<format />
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<storagedate />
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<resourcetype classid="" classname="" schemeid="" schemename="" />
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<device />
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<size />
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<version />
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<lastmetadataupdate />
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<metadataversionnumber />
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<documentationUrl />
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<codeRepositoryUrl />
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<programmingLanguage classid="" classname="" schemeid="" schemename="" />
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<contactperson />
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<contactgroup />
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<tool />
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<originalId>oai:zenodo.org:7351221</originalId>
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<collectedfrom name="ZENODO" id="opendoar____::358aee4cc897452c00244351e4d91f69" />
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<pid classid="oai" classname="Open Archives Initiative" schemeid="dnet:pid_types" schemename="dnet:pid_types">oai:zenodo.org:7351221</pid>
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<pid classid="doi" classname="Digital Object Identifier" schemeid="dnet:pid_types" schemename="dnet:pid_types">10.5281/zenodo.7351221</pid>
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<bestaccessright classid="OPEN" classname="Open Access" schemeid="dnet:access_modes" schemename="dnet:access_modes" />
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<context id="covid-19" label="COVID-19" type="community"></context>
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<datainfo>
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<inferred>false</inferred>
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<deletedbyinference>false</deletedbyinference>
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<trust>0.9</trust>
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<inferenceprovenance />
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<provenanceaction classid="user:insert" classname="user:insert" schemeid="dnet:provenanceActions" schemename="dnet:provenanceActions" />
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</datainfo>
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<rels>
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<rel inferred="false" trust="0.9" inferenceprovenance="" provenanceaction="user:claim">
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<to class="isProducedBy" scheme="dnet:result_project_relations" type="project">corda__h2020::256485716fdb9f5ca69007b7ca5a072b</to>
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<code>101017536</code>
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<acronym>EOSC Future</acronym>
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<title>EOSC Future</title>
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<contracttype classid="" classname="" schemeid="" schemename="" />
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<funding>
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<funder id="ec__________::EC" shortname="EC" name="European Commission" jurisdiction="" />
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<funding_level_0 name="H2020">ec__________::EC::H2020</funding_level_0>
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</funding>
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<websiteurl />
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</rel>
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<rel inferred="false" trust="0.9" inferenceprovenance="" provenanceaction="user:claim">
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<to class="isProducedBy" scheme="dnet:result_project_relations" type="project">corda__h2020::4a3254eac2997eee0a9dcb7a7daedb81</to>
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<code>101046203</code>
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<acronym>BY-COVID</acronym>
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<title>Beyond COVID</title>
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<contracttype classid="" classname="" schemeid="" schemename="" />
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<funding>
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<funder id="ec__________::EC" shortname="EC" name="European Commission" jurisdiction="" />
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<funding_level_0 name="Horizon Europe Framework Programme - HORIZON-RIA\HORIZON Action Grant Budget-Based">ec__________::EC::Horizon Europe Framework Programme - HORIZON-RIA\HORIZON Action Grant Budget-Based</funding_level_0>
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</funding>
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<websiteurl />
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</rel>
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</rels>
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<children>
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<instance id="od______2659::040cee965a4544e343a2ba149783c3fc">
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<instancetype classid="0029" classname="Software" schemeid="dnet:publication_resource" schemename="dnet:publication_resource" />
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<collectedfrom name="ZENODO" id="opendoar____::358aee4cc897452c00244351e4d91f69" />
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<hostedby name="ZENODO" id="opendoar____::358aee4cc897452c00244351e4d91f69" />
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<accessright classid="OPEN" classname="Open Access" schemeid="dnet:access_modes" schemename="dnet:access_modes" />
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<dateofacceptance />
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<webresource>
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<url>https://zenodo.org/record/7351221</url>
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</webresource>
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</instance>
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</children>
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</oaf:result>
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</oaf:entity>
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</metadata>
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</result>
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</record>
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@ -0,0 +1,100 @@
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<record>
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<result xmlns:dri="http://www.driver-repository.eu/namespace/dri"
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xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
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<header>
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<dri:objIdentifier>doi_________::07fdccabd77830e3caccf0b33c083f1b</dri:objIdentifier>
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<dri:dateOfCollection>2022-11-25T01:08:31Z</dri:dateOfCollection>
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<dri:status>under curation</dri:status>
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<counters />
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</header>
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<metadata>
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<oaf:entity xmlns:oaf="http://namespace.openaire.eu/oaf"
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xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
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xsi:schemaLocation="http://namespace.openaire.eu/oaf http://namespace.openaire.eu/oaf http://www.openaire.eu/schema/0.2/oaf-0.2.xsd">
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<oaf:result>
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<title classid="main title" classname="main title" schemeid="dnet:dataCite_title" schemename="dnet:dataCite_title">Monkeypox Knowledge Graph: A semantic resource embedding biological and chemical entities</title>
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<creator rank="1" name="" surname="">Karki, Reagon</creator>
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<creator rank="2" name="" surname="">Andrea, Zaliani</creator>
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<creator rank="3" name="" surname="">Gadiya, Yojana</creator>
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<creator rank="4" name="" surname="">Gribbon, Philip</creator>
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<dateofacceptance />
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<resulttype classid="software" classname="software" schemeid="dnet:result_typologies" schemename="dnet:result_typologies" />
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<language classid="" classname="" schemeid="dnet:languages" schemename="dnet:languages" />
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<description><p>The Monkeypox KG is built using viral and human proteins reported in different resources. Additionally, the KG represents chemicals tested against Monkeypox and their targets, associated biological processes, molecular functions, diseases and side effects.</p> <p><strong>KG status</strong></p> <p>Version 1 stats:</p> <ul> <li>Number of Nodes: 8235</li> <li>Number of Edges: 40422</li> </ul> <p>Version 2 stats (2nd September) :</p> <ul> <li>Number of Nodes: 9129</li> <li>Number of Edges: 44568</li> </ul> <p>Please check the graph.ipynb for understanding step wise process of KG generation and KG statistics. The KG has been exported to formats such as graphml, sif and so on for visualizations in other platforms. For example, the graphml file can be imported to Cytoscape directly. These files are located in 'data\export' folder.</p> <p></p></description>
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<country classid="" classname="" schemeid="" schemename="" />
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<subject classid="" classname="" schemeid="" schemename="" />
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<relevantdate classid="" classname="" schemeid="" schemename="" />
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<publisher>Zenodo</publisher>
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<embargoenddate />
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<journal issn="" eissn="" lissn="" ep="" iss="" sp="" vol="" />
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<source />
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<fulltext />
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<format />
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<storagedate />
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<resourcetype classid="" classname="" schemeid="" schemename="" />
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<device />
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<size />
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<version />
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<lastmetadataupdate />
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<metadataversionnumber />
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<documentationUrl />
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<codeRepositoryUrl />
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<programmingLanguage classid="" classname="" schemeid="" schemename="" />
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<contactperson />
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<contactgroup />
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<tool />
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<originalId>oai:zenodo.org:7351393</originalId>
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<collectedfrom name="ZENODO" id="opendoar____::358aee4cc897452c00244351e4d91f69" />
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<pid classid="oai" classname="Open Archives Initiative" schemeid="dnet:pid_types" schemename="dnet:pid_types">oai:zenodo.org:7351393</pid>
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<pid classid="doi" classname="Digital Object Identifier" schemeid="dnet:pid_types" schemename="dnet:pid_types">10.5281/zenodo.7351393</pid>
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<bestaccessright classid="OPEN" classname="Open Access" schemeid="dnet:access_modes" schemename="dnet:access_modes" />
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<datainfo>
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<inferred>false</inferred>
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<deletedbyinference>false</deletedbyinference>
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<trust>0.9</trust>
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<inferenceprovenance />
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<provenanceaction classid="user:insert" classname="user:insert" schemeid="dnet:provenanceActions" schemename="dnet:provenanceActions" />
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</datainfo>
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<rels>
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<rel inferred="false" trust="0.9" inferenceprovenance="" provenanceaction="user:claim">
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<to class="isProducedBy" scheme="dnet:result_project_relations" type="project">corda__h2020::256485716fdb9f5ca69007b7ca5a072b</to>
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<code>101017536</code>
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<acronym>EOSC Future</acronym>
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<title>EOSC Future</title>
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<contracttype classid="" classname="" schemeid="" schemename="" />
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<funding>
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<funder id="ec__________::EC" shortname="EC" name="European Commission" jurisdiction="" />
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<funding_level_0 name="H2020">ec__________::EC::H2020</funding_level_0>
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</funding>
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<websiteurl />
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</rel>
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<rel inferred="false" trust="0.9" inferenceprovenance="" provenanceaction="user:claim">
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<to class="isProducedBy" scheme="dnet:result_project_relations" type="project">corda__h2020::4a3254eac2997eee0a9dcb7a7daedb81</to>
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<code>101046203</code>
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<acronym>BY-COVID</acronym>
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<title>Beyond COVID</title>
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<contracttype classid="" classname="" schemeid="" schemename="" />
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<funding>
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<funder id="ec__________::EC" shortname="EC" name="European Commission" jurisdiction="" />
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<funding_level_0 name="Horizon Europe Framework Programme - HORIZON-RIA\HORIZON Action Grant Budget-Based">ec__________::EC::Horizon Europe Framework Programme - HORIZON-RIA\HORIZON Action Grant Budget-Based</funding_level_0>
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</funding>
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<websiteurl />
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</rel>
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</rels>
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<children>
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<instance id="od______2659::db2bc6381545f80dc9feec808a173ec0">
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<instancetype classid="0029" classname="Software" schemeid="dnet:publication_resource" schemename="dnet:publication_resource" />
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<collectedfrom name="ZENODO" id="opendoar____::358aee4cc897452c00244351e4d91f69" />
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<hostedby name="ZENODO" id="opendoar____::358aee4cc897452c00244351e4d91f69" />
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<accessright classid="OPEN" classname="Open Access" schemeid="dnet:access_modes" schemename="dnet:access_modes" />
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<dateofacceptance />
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<webresource>
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<url>https://zenodo.org/record/7351393</url>
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</webresource>
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</instance>
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</children>
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</oaf:result>
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</oaf:entity>
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</metadata>
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</result>
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</record>
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@ -0,0 +1,85 @@
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<record>
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<result xmlns:dri="http://www.driver-repository.eu/namespace/dri"
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xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
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<header>
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<dri:objIdentifier>doi_________::93d39dd7edef016928788c3500e149f1</dri:objIdentifier>
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<dri:dateOfCollection>2022-11-24T08:41:37Z</dri:dateOfCollection>
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<dri:status>under curation</dri:status>
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<counters/>
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</header>
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<metadata>
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<oaf:entity xmlns:oaf="http://namespace.openaire.eu/oaf"
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xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
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xsi:schemaLocation="http://namespace.openaire.eu/oaf http://namespace.openaire.eu/oaf http://www.openaire.eu/schema/0.2/oaf-0.2.xsd">
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<oaf:result>
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<title classid="main title" classname="main title" schemeid="dnet:dataCite_title" schemename="dnet:dataCite_title">ENVRI SP - Dashboard State of the Environment - Ocean Indicators</title>
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<creator rank="1" name="" surname="">Tjerk Krijger</creator>
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<dateofacceptance />
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<resulttype classid="other" classname="other" schemeid="dnet:result_typologies" schemename="dnet:result_typologies" />
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<language classid="" classname="" schemeid="dnet:languages" schemename="dnet:languages" />
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<description><p>The attached .yaml file is used as input to the Dashboard State of the Environment, which is a science project of the ENVRI-FAIR science cluster within EOSC-FUTURE. The contents of the file enable the visualization of Ocean indicators on the dashboard. It is possible to download the attached file and change the contents to include indicators from different domains such as atmosphere or biodiversity.</p></description>
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<country classid="" classname="" schemeid="" schemename="" />
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<subject classid="" classname="" schemeid="" schemename="" />
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<relevantdate classid="" classname="" schemeid="" schemename="" />
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<publisher>Zenodo</publisher>
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<embargoenddate />
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<journal issn="" eissn="" lissn="" ep="" iss="" sp="" vol="" />
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<source />
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<fulltext />
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<format />
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<storagedate />
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<resourcetype classid="" classname="" schemeid="" schemename="" />
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<device />
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<size />
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<version />
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<lastmetadataupdate />
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<metadataversionnumber />
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<documentationUrl />
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<codeRepositoryUrl />
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<programmingLanguage classid="" classname="" schemeid="" schemename="" />
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<contactperson />
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<contactgroup />
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<tool />
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<originalId>oai:zenodo.org:7353841</originalId>
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<collectedfrom name="ZENODO" id="opendoar____::358aee4cc897452c00244351e4d91f69" />
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<pid classid="oai" classname="Open Archives Initiative" schemeid="dnet:pid_types" schemename="dnet:pid_types">oai:zenodo.org:7353841</pid>
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<pid classid="doi" classname="Digital Object Identifier" schemeid="dnet:pid_types" schemename="dnet:pid_types">10.5281/zenodo.7353841</pid>
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<bestaccessright classid="OPEN" classname="Open Access" schemeid="dnet:access_modes" schemename="dnet:access_modes" />
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<datainfo>
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<inferred>false</inferred>
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<deletedbyinference>false</deletedbyinference>
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<trust>0.9</trust>
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<inferenceprovenance />
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<provenanceaction classid="user:insert" classname="user:insert" schemeid="dnet:provenanceActions" schemename="dnet:provenanceActions" />
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</datainfo>
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<rels>
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<rel inferred="false" trust="0.9" inferenceprovenance="" provenanceaction="user:claim">
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<to class="isProducedBy" scheme="dnet:result_project_relations" type="project">corda__h2020::256485716fdb9f5ca69007b7ca5a072b</to>
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<code>101017536</code>
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<acronym>EOSC Future</acronym>
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<title>EOSC Future</title>
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<contracttype classid="" classname="" schemeid="" schemename="" />
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<funding>
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<funder id="ec__________::EC" shortname="EC" name="European Commission" jurisdiction="" />
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<funding_level_0 name="H2020">ec__________::EC::H2020</funding_level_0>
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</funding>
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<websiteurl />
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</rel>
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</rels>
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<children>
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<instance id="od______2659::3e4323c221f269e5f3d6db4c61dd2ec8">
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<instancetype classid="0020" classname="Other ORP type" schemeid="dnet:publication_resource" schemename="dnet:publication_resource" />
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<collectedfrom name="ZENODO" id="opendoar____::358aee4cc897452c00244351e4d91f69" />
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<hostedby name="ZENODO" id="opendoar____::358aee4cc897452c00244351e4d91f69" />
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<accessright classid="OPEN" classname="Open Access" schemeid="dnet:access_modes" schemename="dnet:access_modes" />
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<dateofacceptance />
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<webresource>
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<url>https://zenodo.org/record/7353841</url>
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</webresource>
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</instance>
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</children>
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||||
</oaf:result>
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||||
</oaf:entity>
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||||
</metadata>
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||||
</result>
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||||
</record>
|
||||
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