Merge pull request 'enrichment_country' (#203) from enrichment_country into beta
Looks good to me Reviewed-on: #203
This commit is contained in:
commit
d48ccfd65e
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@ -22,4 +22,11 @@ public class CountrySbs implements Serializable {
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public void setClassname(String classname) {
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this.classname = classname;
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}
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public static CountrySbs newInstance(String classid, String classname) {
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CountrySbs csbs = new CountrySbs();
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csbs.classid = classid;
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csbs.classname = classname;
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return csbs;
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}
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}
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@ -22,4 +22,11 @@ public class DatasourceCountry implements Serializable {
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public void setCountry(CountrySbs country) {
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this.country = country;
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}
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public static DatasourceCountry newInstance(String dataSourceId, CountrySbs country) {
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DatasourceCountry dsc = new DatasourceCountry();
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dsc.dataSourceId = dataSourceId;
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dsc.country = country;
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return dsc;
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}
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}
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@ -0,0 +1,32 @@
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package eu.dnetlib.dhp.countrypropagation;
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import java.io.Serializable;
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public class EntityEntityRel implements Serializable {
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private String entity1Id;
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private String entity2Id;
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public static EntityEntityRel newInstance(String source, String target) {
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EntityEntityRel dso = new EntityEntityRel();
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dso.entity1Id = source;
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dso.entity2Id = target;
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return dso;
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}
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public String getEntity1Id() {
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return entity1Id;
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}
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public void setEntity1Id(String entity1Id) {
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this.entity1Id = entity1Id;
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}
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public String getEntity2Id() {
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return entity2Id;
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}
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public void setEntity2Id(String entity2Id) {
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this.entity2Id = entity2Id;
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}
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}
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@ -2,14 +2,16 @@
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package eu.dnetlib.dhp.countrypropagation;
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import static eu.dnetlib.dhp.PropagationConstant.*;
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import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkHiveSession;
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import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
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import java.util.Arrays;
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import java.util.List;
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import java.util.stream.Collectors;
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import org.apache.commons.io.IOUtils;
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import org.apache.spark.SparkConf;
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import org.apache.spark.api.java.function.FilterFunction;
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import org.apache.spark.api.java.function.ForeachFunction;
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import org.apache.spark.api.java.function.MapFunction;
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import org.apache.spark.sql.Dataset;
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import org.apache.spark.sql.Encoders;
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import org.apache.spark.sql.SaveMode;
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@ -17,11 +19,15 @@ import org.apache.spark.sql.SparkSession;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import eu.dnetlib.dhp.application.ArgumentApplicationParser;
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import eu.dnetlib.dhp.schema.common.ModelConstants;
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import eu.dnetlib.dhp.schema.oaf.Datasource;
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import eu.dnetlib.dhp.schema.oaf.Organization;
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import eu.dnetlib.dhp.schema.oaf.Qualifier;
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import eu.dnetlib.dhp.schema.oaf.Relation;
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import scala.Tuple2;
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/**
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* For the association of the country to the datasource The association is computed only for datasource of specific type
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@ -54,9 +60,8 @@ public class PrepareDatasourceCountryAssociation {
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log.info("outputPath {}: ", outputPath);
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SparkConf conf = new SparkConf();
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conf.set("hive.metastore.uris", parser.get("hive_metastore_uris"));
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runWithSparkHiveSession(
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runWithSparkSession(
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conf,
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isSparkSessionManaged,
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spark -> {
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@ -77,40 +82,46 @@ public class PrepareDatasourceCountryAssociation {
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String inputPath,
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String outputPath) {
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final String whitelisted = whitelist
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.stream()
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.map(id -> " d.id = '" + id + "'")
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.collect(Collectors.joining(" OR "));
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// filtering of the datasource taking only the non deleted by inference and those with the allowed types or
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// whose id is in whitelist
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Dataset<Datasource> datasource = readPath(spark, inputPath + "/datasource", Datasource.class)
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.filter(
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(FilterFunction<Datasource>) ds -> !ds.getDataInfo().getDeletedbyinference() &&
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(allowedtypes.contains(ds.getDatasourcetype().getClassid()) ||
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whitelist.contains(ds.getId())));
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final String allowed = allowedtypes
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.stream()
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.map(type -> " d.datasourcetype.classid = '" + type + "'")
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.collect(Collectors.joining(" OR "));
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// filtering of the relations taking the non deleted by inference and those with IsProvidedBy as relclass
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Dataset<Relation> relation = readPath(spark, inputPath + "/relation", Relation.class)
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.filter(
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(FilterFunction<Relation>) rel -> rel.getRelClass().equalsIgnoreCase(ModelConstants.IS_PROVIDED_BY) &&
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!rel.getDataInfo().getDeletedbyinference());
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Dataset<Datasource> datasource = readPath(spark, inputPath + "/datasource", Datasource.class);
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Dataset<Relation> relation = readPath(spark, inputPath + "/relation", Relation.class);
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Dataset<Organization> organization = readPath(spark, inputPath + "/organization", Organization.class);
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// filtering of the organization taking only the non deleted by inference and those with information about the
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// country
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Dataset<Organization> organization = readPath(spark, inputPath + "/organization", Organization.class)
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.filter(
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(FilterFunction<Organization>) o -> !o.getDataInfo().getDeletedbyinference() &&
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o.getCountry().getClassid().length() > 0 &&
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!o.getCountry().getClassid().equals(ModelConstants.UNKNOWN));
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datasource.createOrReplaceTempView("datasource");
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relation.createOrReplaceTempView("relation");
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organization.createOrReplaceTempView("organization");
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// associated the datasource id with the id of the organization providing the datasource
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Dataset<EntityEntityRel> dse = datasource
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.joinWith(relation, datasource.col("id").equalTo(relation.col("source")))
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.map(
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(MapFunction<Tuple2<Datasource, Relation>, EntityEntityRel>) t2 -> EntityEntityRel
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.newInstance(t2._2.getSource(), t2._2.getTarget()),
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Encoders.bean(EntityEntityRel.class));
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String query = "SELECT source dataSourceId, " +
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"named_struct('classid', country.classid, 'classname', country.classname) country " +
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"FROM datasource d " +
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"JOIN relation rel " +
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"ON d.id = rel.source " +
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"JOIN organization o " +
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"ON o.id = rel.target " +
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"WHERE rel.datainfo.deletedbyinference = false " +
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"and lower(rel.relclass) = '" + ModelConstants.IS_PROVIDED_BY.toLowerCase() + "'" +
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"and o.datainfo.deletedbyinference = false " +
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"and length(o.country.classid) > 0 " +
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"and (" + allowed + " or " + whitelisted + ")";
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spark
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.sql(query)
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.as(Encoders.bean(DatasourceCountry.class))
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// joins with the information stored in the organization dataset to associate the country to the datasource id
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dse
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.joinWith(organization, dse.col("entity2Id").equalTo(organization.col("id")))
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.map((MapFunction<Tuple2<EntityEntityRel, Organization>, DatasourceCountry>) t2 -> {
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Qualifier country = t2._2.getCountry();
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return DatasourceCountry
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.newInstance(
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t2._1.getEntity1Id(),
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CountrySbs.newInstance(country.getClassid(), country.getClassname()));
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}, Encoders.bean(DatasourceCountry.class))
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.write()
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.option("compression", "gzip")
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.mode(SaveMode.Overwrite)
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@ -3,14 +3,21 @@ package eu.dnetlib.dhp.countrypropagation;
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import static eu.dnetlib.dhp.PropagationConstant.*;
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import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkHiveSession;
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import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
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import java.util.ArrayList;
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import java.util.Arrays;
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import java.util.HashSet;
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import java.util.Set;
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import java.util.stream.Collectors;
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import org.apache.commons.io.IOUtils;
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import org.apache.hadoop.io.compress.GzipCodec;
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import org.apache.spark.SparkConf;
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import org.apache.spark.api.java.function.FilterFunction;
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import org.apache.spark.api.java.function.FlatMapFunction;
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import org.apache.spark.api.java.function.MapFunction;
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import org.apache.spark.api.java.function.MapGroupsFunction;
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import org.apache.spark.sql.*;
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import org.apache.spark.sql.Dataset;
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import org.slf4j.Logger;
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@ -23,14 +30,6 @@ import scala.Tuple2;
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public class PrepareResultCountrySet {
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private static final Logger log = LoggerFactory.getLogger(PrepareResultCountrySet.class);
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private static final String RESULT_COUNTRYSET_QUERY = "SELECT id resultId, collect_set(country) countrySet "
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+ "FROM ( SELECT id, country "
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+ "FROM datasource_country JOIN cfhb ON cf = dataSourceId "
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+ "UNION ALL "
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+ "SELECT id, country FROM datasource_country "
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+ "JOIN cfhb ON hb = dataSourceId ) tmp "
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+ "GROUP BY id";
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public static void main(String[] args) throws Exception {
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String jsonConfiguration = IOUtils
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.toString(
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@ -45,6 +44,8 @@ public class PrepareResultCountrySet {
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Boolean isSparkSessionManaged = isSparkSessionManaged(parser);
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log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
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String workingPath = parser.get("workingPath");
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String inputPath = parser.get("sourcePath");
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log.info("inputPath: {}", inputPath);
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@ -60,9 +61,9 @@ public class PrepareResultCountrySet {
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Class<? extends Result> resultClazz = (Class<? extends Result>) Class.forName(resultClassName);
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SparkConf conf = new SparkConf();
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conf.set("hive.metastore.uris", parser.get("hive_metastore_uris"));
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// conf.set("hive.metastore.uris", parser.get("hive_metastore_uris"));
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runWithSparkHiveSession(
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runWithSparkSession(
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conf,
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isSparkSessionManaged,
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spark -> {
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@ -72,6 +73,7 @@ public class PrepareResultCountrySet {
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inputPath,
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outputPath,
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datasourcecountrypath,
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workingPath,
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resultClazz);
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});
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}
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@ -81,43 +83,63 @@ public class PrepareResultCountrySet {
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String inputPath,
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String outputPath,
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String datasourcecountrypath,
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String workingPath,
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Class<R> resultClazz) {
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Dataset<R> result = readPath(spark, inputPath, resultClazz);
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result.createOrReplaceTempView("result");
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// selects all the results non deleted by inference and non invisible
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Dataset<R> result = readPath(spark, inputPath, resultClazz)
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.filter(
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(FilterFunction<R>) r -> !r.getDataInfo().getDeletedbyinference() &&
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!r.getDataInfo().getInvisible());
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createCfHbforResult(spark);
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// of the results collects the distinct keys for collected from (at the level of the result) and hosted by
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// and produces pairs resultId, key for each distinct key associated to the result
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result.flatMap((FlatMapFunction<R, EntityEntityRel>) r -> {
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Set<String> cfhb = r.getCollectedfrom().stream().map(cf -> cf.getKey()).collect(Collectors.toSet());
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cfhb.addAll(r.getInstance().stream().map(i -> i.getHostedby().getKey()).collect(Collectors.toSet()));
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return cfhb
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.stream()
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.map(value -> EntityEntityRel.newInstance(r.getId(), value))
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.collect(Collectors.toList())
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.iterator();
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}, Encoders.bean(EntityEntityRel.class))
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.write()
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.mode(SaveMode.Overwrite)
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.option("compression", "gzip")
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.json(workingPath + "/resultCfHb");
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Dataset<DatasourceCountry> datasource_country = readPath(spark, datasourcecountrypath, DatasourceCountry.class);
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datasource_country.createOrReplaceTempView("datasource_country");
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spark
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.sql(RESULT_COUNTRYSET_QUERY)
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.as(Encoders.bean(ResultCountrySet.class))
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.toJavaRDD()
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.mapToPair(value -> new Tuple2<>(value.getResultId(), value))
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.reduceByKey((a, b) -> {
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ArrayList<CountrySbs> countryList = a.getCountrySet();
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Set<String> countryCodes = countryList
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.stream()
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.map(CountrySbs::getClassid)
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.collect(Collectors.toSet());
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b
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.getCountrySet()
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.stream()
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.forEach(c -> {
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if (!countryCodes.contains(c.getClassid())) {
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countryList.add(c);
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countryCodes.add(c.getClassid());
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}
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Dataset<EntityEntityRel> cfhb = readPath(spark, workingPath + "/resultCfHb", EntityEntityRel.class);
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datasource_country
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.joinWith(
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cfhb, cfhb
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.col("entity2Id")
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.equalTo(datasource_country.col("datasourceId")))
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.groupByKey(
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(MapFunction<Tuple2<DatasourceCountry, EntityEntityRel>, String>) t2 -> t2._2().getEntity1Id(),
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Encoders.STRING())
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.mapGroups(
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(MapGroupsFunction<String, Tuple2<DatasourceCountry, EntityEntityRel>, ResultCountrySet>) (k, it) -> {
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ResultCountrySet rcs = new ResultCountrySet();
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rcs.setResultId(k);
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Set<CountrySbs> set = new HashSet<>();
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Set<String> countryCodes = new HashSet<>();
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DatasourceCountry first = it.next()._1();
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countryCodes.add(first.getCountry().getClassid());
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set.add(first.getCountry());
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it.forEachRemaining(t2 -> {
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if (!countryCodes.contains(t2._1().getCountry().getClassid()))
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set.add(t2._1().getCountry());
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});
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a.setCountrySet(countryList);
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return a;
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})
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.map(couple -> OBJECT_MAPPER.writeValueAsString(couple._2()))
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.saveAsTextFile(outputPath, GzipCodec.class);
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rcs.setCountrySet(new ArrayList<>(set));
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return rcs;
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}, Encoders.bean(ResultCountrySet.class))
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.write()
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.mode(SaveMode.Overwrite)
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.option("compression", "gzip")
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.json(outputPath);
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}
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}
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|
|
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@ -56,12 +56,6 @@ public class SparkCountryPropagationJob {
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final String resultClassName = parser.get("resultTableName");
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log.info("resultTableName: {}", resultClassName);
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final Boolean saveGraph = Optional
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.ofNullable(parser.get("saveGraph"))
|
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.map(Boolean::valueOf)
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.orElse(Boolean.TRUE);
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log.info("saveGraph: {}", saveGraph);
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Class<? extends Result> resultClazz = (Class<? extends Result>) Class.forName(resultClassName);
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SparkConf conf = new SparkConf();
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@ -75,8 +69,7 @@ public class SparkCountryPropagationJob {
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sourcePath,
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preparedInfoPath,
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outputPath,
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resultClazz,
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saveGraph);
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resultClazz);
|
||||
});
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||||
}
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|
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@ -85,27 +78,25 @@ public class SparkCountryPropagationJob {
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String sourcePath,
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String preparedInfoPath,
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String outputPath,
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||||
Class<R> resultClazz,
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||||
boolean saveGraph) {
|
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Class<R> resultClazz) {
|
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|
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if (saveGraph) {
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log.info("Reading Graph table from: {}", sourcePath);
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Dataset<R> res = readPath(spark, sourcePath, resultClazz);
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log.info("Reading Graph table from: {}", sourcePath);
|
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Dataset<R> res = readPath(spark, sourcePath, resultClazz);
|
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|
||||
log.info("Reading prepared info: {}", preparedInfoPath);
|
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Dataset<ResultCountrySet> prepared = spark
|
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.read()
|
||||
.json(preparedInfoPath)
|
||||
.as(Encoders.bean(ResultCountrySet.class));
|
||||
log.info("Reading prepared info: {}", preparedInfoPath);
|
||||
Dataset<ResultCountrySet> prepared = spark
|
||||
.read()
|
||||
.json(preparedInfoPath)
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||||
.as(Encoders.bean(ResultCountrySet.class));
|
||||
|
||||
res
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.joinWith(prepared, res.col("id").equalTo(prepared.col("resultId")), "left_outer")
|
||||
.map(getCountryMergeFn(), Encoders.bean(resultClazz))
|
||||
.write()
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||||
.option("compression", "gzip")
|
||||
.mode(SaveMode.Overwrite)
|
||||
.json(outputPath);
|
||||
|
||||
res
|
||||
.joinWith(prepared, res.col("id").equalTo(prepared.col("resultId")), "left_outer")
|
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.map(getCountryMergeFn(), Encoders.bean(resultClazz))
|
||||
.write()
|
||||
.option("compression", "gzip")
|
||||
.mode(SaveMode.Overwrite)
|
||||
.json(outputPath);
|
||||
}
|
||||
}
|
||||
|
||||
private static <R extends Result> MapFunction<Tuple2<R, ResultCountrySet>, R> getCountryMergeFn() {
|
||||
|
|
|
|||
|
|
@ -11,12 +11,6 @@
|
|||
"paramDescription": "the hive metastore uris",
|
||||
"paramRequired": false
|
||||
},
|
||||
{
|
||||
"paramName":"sg",
|
||||
"paramLongName":"saveGraph",
|
||||
"paramDescription": "true if the new version of the graph must be saved",
|
||||
"paramRequired": false
|
||||
},
|
||||
{
|
||||
"paramName":"tn",
|
||||
"paramLongName":"resultTableName",
|
||||
|
|
|
|||
|
|
@ -5,12 +5,6 @@
|
|||
"paramDescription": "the path of the sequencial file to read",
|
||||
"paramRequired": true
|
||||
},
|
||||
{
|
||||
"paramName":"h",
|
||||
"paramLongName":"hive_metastore_uris",
|
||||
"paramDescription": "the hive metastore uris",
|
||||
"paramRequired": true
|
||||
},
|
||||
{
|
||||
"paramName": "out",
|
||||
"paramLongName": "outputPath",
|
||||
|
|
|
|||
|
|
@ -12,9 +12,9 @@
|
|||
"paramRequired": true
|
||||
},
|
||||
{
|
||||
"paramName":"h",
|
||||
"paramLongName":"hive_metastore_uris",
|
||||
"paramDescription": "the hive metastore uris",
|
||||
"paramName":"w",
|
||||
"paramLongName":"workingPath",
|
||||
"paramDescription": "the working path",
|
||||
"paramRequired": true
|
||||
},
|
||||
{
|
||||
|
|
|
|||
|
|
@ -24,6 +24,7 @@ import org.slf4j.LoggerFactory;
|
|||
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||
|
||||
import eu.dnetlib.dhp.schema.oaf.Country;
|
||||
import eu.dnetlib.dhp.schema.oaf.Publication;
|
||||
import eu.dnetlib.dhp.schema.oaf.Qualifier;
|
||||
import eu.dnetlib.dhp.schema.oaf.Software;
|
||||
import scala.Tuple2;
|
||||
|
|
@ -69,17 +70,16 @@ public class CountryPropagationJobTest {
|
|||
@Test
|
||||
void testCountryPropagationSoftware() throws Exception {
|
||||
final String sourcePath = getClass()
|
||||
.getResource("/eu/dnetlib/dhp/countrypropagation/sample/software")
|
||||
.getResource("/eu/dnetlib/dhp/countrypropagation/graph/software")
|
||||
.getPath();
|
||||
final String preparedInfoPath = getClass()
|
||||
.getResource("/eu/dnetlib/dhp/countrypropagation/preparedInfo")
|
||||
.getResource("/eu/dnetlib/dhp/countrypropagation/preparedInfo/software")
|
||||
.getPath();
|
||||
SparkCountryPropagationJob
|
||||
.main(
|
||||
new String[] {
|
||||
"--isSparkSessionManaged", Boolean.FALSE.toString(),
|
||||
"--sourcePath", sourcePath,
|
||||
"-saveGraph", "true",
|
||||
"-resultTableName", Software.class.getCanonicalName(),
|
||||
"-outputPath", workingDir.toString() + "/software",
|
||||
"-preparedInfoPath", preparedInfoPath
|
||||
|
|
@ -91,8 +91,6 @@ public class CountryPropagationJobTest {
|
|||
.textFile(workingDir.toString() + "/software")
|
||||
.map(item -> OBJECT_MAPPER.readValue(item, Software.class));
|
||||
|
||||
// tmp.map(s -> new Gson().toJson(s)).foreach(s -> System.out.println(s));
|
||||
|
||||
Assertions.assertEquals(10, tmp.count());
|
||||
|
||||
Dataset<Software> verificationDs = spark.createDataset(tmp.rdd(), Encoders.bean(Software.class));
|
||||
|
|
@ -259,4 +257,145 @@ public class CountryPropagationJobTest {
|
|||
7, countryExplodedWithCountryProvenance.filter("_2 = 'propagation'").count());
|
||||
}
|
||||
|
||||
@Test
|
||||
void testCountryPropagationPublication() throws Exception {
|
||||
final String sourcePath = getClass()
|
||||
.getResource("/eu/dnetlib/dhp/countrypropagation/graph/publication")
|
||||
.getPath();
|
||||
final String preparedInfoPath = getClass()
|
||||
.getResource("/eu/dnetlib/dhp/countrypropagation/preparedInfo/publication")
|
||||
.getPath();
|
||||
SparkCountryPropagationJob
|
||||
.main(
|
||||
new String[] {
|
||||
"--isSparkSessionManaged", Boolean.FALSE.toString(),
|
||||
"--sourcePath", sourcePath,
|
||||
"-resultTableName", Publication.class.getCanonicalName(),
|
||||
"-outputPath", workingDir.toString() + "/publication",
|
||||
"-preparedInfoPath", preparedInfoPath
|
||||
});
|
||||
|
||||
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
|
||||
|
||||
JavaRDD<Publication> tmp = sc
|
||||
.textFile(workingDir.toString() + "/publication")
|
||||
.map(item -> OBJECT_MAPPER.readValue(item, Publication.class));
|
||||
|
||||
Assertions.assertEquals(12, tmp.count());
|
||||
|
||||
Assertions.assertEquals(5, tmp.filter(r -> r.getCountry().size() > 0).count());
|
||||
|
||||
tmp
|
||||
.foreach(
|
||||
r -> r.getCountry().stream().forEach(c -> Assertions.assertEquals("dnet:countries", c.getSchemeid())));
|
||||
tmp
|
||||
.foreach(
|
||||
r -> r
|
||||
.getCountry()
|
||||
.stream()
|
||||
.forEach(c -> Assertions.assertEquals("dnet:countries", c.getSchemename())));
|
||||
tmp
|
||||
.foreach(
|
||||
r -> r
|
||||
.getCountry()
|
||||
.stream()
|
||||
.forEach(c -> Assertions.assertFalse(c.getDataInfo().getDeletedbyinference())));
|
||||
tmp.foreach(r -> r.getCountry().stream().forEach(c -> Assertions.assertFalse(c.getDataInfo().getInvisible())));
|
||||
tmp.foreach(r -> r.getCountry().stream().forEach(c -> Assertions.assertTrue(c.getDataInfo().getInferred())));
|
||||
tmp
|
||||
.foreach(
|
||||
r -> r.getCountry().stream().forEach(c -> Assertions.assertEquals("0.85", c.getDataInfo().getTrust())));
|
||||
tmp
|
||||
.foreach(
|
||||
r -> r
|
||||
.getCountry()
|
||||
.stream()
|
||||
.forEach(c -> Assertions.assertEquals("propagation", c.getDataInfo().getInferenceprovenance())));
|
||||
tmp
|
||||
.foreach(
|
||||
r -> r
|
||||
.getCountry()
|
||||
.stream()
|
||||
.forEach(
|
||||
c -> Assertions
|
||||
.assertEquals("country:instrepos", c.getDataInfo().getProvenanceaction().getClassid())));
|
||||
tmp
|
||||
.foreach(
|
||||
r -> r
|
||||
.getCountry()
|
||||
.stream()
|
||||
.forEach(
|
||||
c -> Assertions
|
||||
.assertEquals(
|
||||
"dnet:provenanceActions", c.getDataInfo().getProvenanceaction().getSchemeid())));
|
||||
tmp
|
||||
.foreach(
|
||||
r -> r
|
||||
.getCountry()
|
||||
.stream()
|
||||
.forEach(
|
||||
c -> Assertions
|
||||
.assertEquals(
|
||||
"dnet:provenanceActions", c.getDataInfo().getProvenanceaction().getSchemename())));
|
||||
|
||||
List<Country> countries = tmp
|
||||
.filter(r -> r.getId().equals("50|06cdd3ff4700::49ec404cee4e1452808aabeaffbd3072"))
|
||||
.collect()
|
||||
.get(0)
|
||||
.getCountry();
|
||||
Assertions.assertEquals(1, countries.size());
|
||||
Assertions.assertEquals("NL", countries.get(0).getClassid());
|
||||
Assertions.assertEquals("Netherlands", countries.get(0).getClassname());
|
||||
|
||||
countries = tmp
|
||||
.filter(r -> r.getId().equals("50|07b5c0ccd4fe::e7f5459cc97865f2af6e3da964c1250b"))
|
||||
.collect()
|
||||
.get(0)
|
||||
.getCountry();
|
||||
Assertions.assertEquals(1, countries.size());
|
||||
Assertions.assertEquals("NL", countries.get(0).getClassid());
|
||||
Assertions.assertEquals("Netherlands", countries.get(0).getClassname());
|
||||
|
||||
countries = tmp
|
||||
.filter(r -> r.getId().equals("50|355e65625b88::e7d48a470b13bda61f7ebe3513e20cb6"))
|
||||
.collect()
|
||||
.get(0)
|
||||
.getCountry();
|
||||
Assertions.assertEquals(2, countries.size());
|
||||
Assertions
|
||||
.assertTrue(
|
||||
countries.stream().anyMatch(cs -> cs.getClassid().equals("IT") && cs.getClassname().equals("Italy")));
|
||||
Assertions
|
||||
.assertTrue(
|
||||
countries.stream().anyMatch(cs -> cs.getClassid().equals("FR") && cs.getClassname().equals("France")));
|
||||
|
||||
countries = tmp
|
||||
.filter(r -> r.getId().equals("50|355e65625b88::74009c567c81b4aa55c813db658734df"))
|
||||
.collect()
|
||||
.get(0)
|
||||
.getCountry();
|
||||
Assertions.assertEquals(2, countries.size());
|
||||
Assertions
|
||||
.assertTrue(
|
||||
countries.stream().anyMatch(cs -> cs.getClassid().equals("IT") && cs.getClassname().equals("Italy")));
|
||||
Assertions
|
||||
.assertTrue(
|
||||
countries
|
||||
.stream()
|
||||
.anyMatch(cs -> cs.getClassid().equals("NL") && cs.getClassname().equals("Netherlands")));
|
||||
|
||||
countries = tmp
|
||||
.filter(r -> r.getId().equals("50|355e65625b88::54a1c76f520bb2c8da27d12e42891088"))
|
||||
.collect()
|
||||
.get(0)
|
||||
.getCountry();
|
||||
Assertions.assertEquals(2, countries.size());
|
||||
Assertions
|
||||
.assertTrue(
|
||||
countries.stream().anyMatch(cs -> cs.getClassid().equals("IT") && cs.getClassname().equals("Italy")));
|
||||
Assertions
|
||||
.assertTrue(
|
||||
countries.stream().anyMatch(cs -> cs.getClassid().equals("FR") && cs.getClassname().equals("France")));
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
|||
|
|
@ -0,0 +1,176 @@
|
|||
|
||||
package eu.dnetlib.dhp.countrypropagation;
|
||||
|
||||
import java.io.IOException;
|
||||
import java.nio.file.Files;
|
||||
import java.nio.file.Path;
|
||||
|
||||
import org.apache.commons.io.FileUtils;
|
||||
import org.apache.spark.SparkConf;
|
||||
import org.apache.spark.api.java.JavaRDD;
|
||||
import org.apache.spark.api.java.JavaSparkContext;
|
||||
import org.apache.spark.sql.SparkSession;
|
||||
import org.junit.jupiter.api.AfterAll;
|
||||
import org.junit.jupiter.api.Assertions;
|
||||
import org.junit.jupiter.api.BeforeAll;
|
||||
import org.junit.jupiter.api.Test;
|
||||
|
||||
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||
|
||||
public class DatasourceCountryPreparationTest {
|
||||
|
||||
private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
|
||||
|
||||
private static SparkSession spark;
|
||||
|
||||
private static Path workingDir;
|
||||
|
||||
@BeforeAll
|
||||
public static void beforeAll() throws IOException {
|
||||
workingDir = Files.createTempDirectory(DatasourceCountryPreparationTest.class.getSimpleName());
|
||||
|
||||
SparkConf conf = new SparkConf();
|
||||
conf.setAppName(DatasourceCountryPreparationTest.class.getSimpleName());
|
||||
|
||||
conf.setMaster("local[*]");
|
||||
conf.set("spark.driver.host", "localhost");
|
||||
conf.set("hive.metastore.local", "true");
|
||||
conf.set("spark.ui.enabled", "false");
|
||||
conf.set("spark.sql.warehouse.dir", workingDir.toString());
|
||||
conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString());
|
||||
|
||||
spark = SparkSession
|
||||
.builder()
|
||||
.appName(DatasourceCountryPreparationTest.class.getSimpleName())
|
||||
.config(conf)
|
||||
.getOrCreate();
|
||||
}
|
||||
|
||||
@AfterAll
|
||||
public static void afterAll() throws IOException {
|
||||
FileUtils.deleteDirectory(workingDir.toFile());
|
||||
spark.stop();
|
||||
}
|
||||
|
||||
@Test
|
||||
void testPrepareDatasourceCountry() throws Exception {
|
||||
final String sourcePath = getClass()
|
||||
.getResource("/eu/dnetlib/dhp/countrypropagation/graph")
|
||||
.getPath();
|
||||
|
||||
PrepareDatasourceCountryAssociation
|
||||
.main(
|
||||
new String[] {
|
||||
"--isSparkSessionManaged", Boolean.FALSE.toString(),
|
||||
"--sourcePath", sourcePath,
|
||||
"--outputPath", workingDir.toString() + "/datasourceCountry",
|
||||
"--allowedtypes", "pubsrepository::institutional",
|
||||
"--whitelist",
|
||||
"10|openaire____::3795d6478e30e2c9f787d427ff160944;10|opendoar____::16e6a3326dd7d868cbc926602a61e4d0;10|eurocrisdris::fe4903425d9040f680d8610d9079ea14;10|openaire____::5b76240cc27a58c6f7ceef7d8c36660e;10|openaire____::172bbccecf8fca44ab6a6653e84cb92a;10|openaire____::149c6590f8a06b46314eed77bfca693f;10|eurocrisdris::a6026877c1a174d60f81fd71f62df1c1;10|openaire____::4692342f0992d91f9e705c26959f09e0;10|openaire____::8d529dbb05ec0284662b391789e8ae2a;10|openaire____::345c9d171ef3c5d706d08041d506428c;10|opendoar____::1c1d4df596d01da60385f0bb17a4a9e0;10|opendoar____::7a614fd06c325499f1680b9896beedeb;10|opendoar____::1ee3dfcd8a0645a25a35977997223d22;10|opendoar____::d296c101daa88a51f6ca8cfc1ac79b50;10|opendoar____::798ed7d4ee7138d49b8828958048130a;10|openaire____::c9d2209ecc4d45ba7b4ca7597acb88a2;10|eurocrisdris::c49e0fe4b9ba7b7fab717d1f0f0a674d;10|eurocrisdris::9ae43d14471c4b33661fedda6f06b539;10|eurocrisdris::432ca599953ff50cd4eeffe22faf3e48"
|
||||
});
|
||||
|
||||
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
|
||||
|
||||
JavaRDD<DatasourceCountry> tmp = sc
|
||||
.textFile(workingDir.toString() + "/datasourceCountry")
|
||||
.map(item -> OBJECT_MAPPER.readValue(item, DatasourceCountry.class));
|
||||
|
||||
Assertions.assertEquals(3, tmp.count());
|
||||
Assertions
|
||||
.assertEquals(
|
||||
1, tmp
|
||||
.filter(
|
||||
dsc -> dsc
|
||||
.getDataSourceId()
|
||||
.equals("10|eurocrisdris::fe4903425d9040f680d8610d9079ea14"))
|
||||
.count());
|
||||
Assertions
|
||||
.assertEquals(
|
||||
1, tmp
|
||||
.filter(
|
||||
dsc -> dsc
|
||||
.getDataSourceId()
|
||||
.equals("10|opendoar____::f0dd4a99fba6075a9494772b58f95280"))
|
||||
.count());
|
||||
Assertions
|
||||
.assertEquals(
|
||||
1, tmp
|
||||
.filter(
|
||||
dsc -> dsc
|
||||
.getDataSourceId()
|
||||
.equals("10|eurocrisdris::9ae43d14471c4b33661fedda6f06b539"))
|
||||
.count());
|
||||
|
||||
Assertions
|
||||
.assertEquals(
|
||||
"NL", tmp
|
||||
.filter(
|
||||
dsc -> dsc
|
||||
.getDataSourceId()
|
||||
.equals("10|eurocrisdris::fe4903425d9040f680d8610d9079ea14"))
|
||||
.collect()
|
||||
.get(0)
|
||||
.getCountry()
|
||||
.getClassid());
|
||||
Assertions
|
||||
.assertEquals(
|
||||
"Netherlands", tmp
|
||||
.filter(
|
||||
dsc -> dsc
|
||||
.getDataSourceId()
|
||||
.equals("10|eurocrisdris::fe4903425d9040f680d8610d9079ea14"))
|
||||
.collect()
|
||||
.get(0)
|
||||
.getCountry()
|
||||
.getClassname());
|
||||
|
||||
Assertions
|
||||
.assertEquals(
|
||||
"IT", tmp
|
||||
.filter(
|
||||
dsc -> dsc
|
||||
.getDataSourceId()
|
||||
.equals("10|opendoar____::f0dd4a99fba6075a9494772b58f95280"))
|
||||
.collect()
|
||||
.get(0)
|
||||
.getCountry()
|
||||
.getClassid());
|
||||
Assertions
|
||||
.assertEquals(
|
||||
"Italy", tmp
|
||||
.filter(
|
||||
dsc -> dsc
|
||||
.getDataSourceId()
|
||||
.equals("10|opendoar____::f0dd4a99fba6075a9494772b58f95280"))
|
||||
.collect()
|
||||
.get(0)
|
||||
.getCountry()
|
||||
.getClassname());
|
||||
|
||||
Assertions
|
||||
.assertEquals(
|
||||
"FR", tmp
|
||||
.filter(
|
||||
dsc -> dsc
|
||||
.getDataSourceId()
|
||||
.equals("10|eurocrisdris::9ae43d14471c4b33661fedda6f06b539"))
|
||||
.collect()
|
||||
.get(0)
|
||||
.getCountry()
|
||||
.getClassid());
|
||||
Assertions
|
||||
.assertEquals(
|
||||
"France", tmp
|
||||
.filter(
|
||||
dsc -> dsc
|
||||
.getDataSourceId()
|
||||
.equals("10|eurocrisdris::9ae43d14471c4b33661fedda6f06b539"))
|
||||
.collect()
|
||||
.get(0)
|
||||
.getCountry()
|
||||
.getClassname());
|
||||
|
||||
tmp.foreach(e -> System.out.println(OBJECT_MAPPER.writeValueAsString(e)));
|
||||
|
||||
}
|
||||
}
|
||||
|
|
@ -0,0 +1,158 @@
|
|||
|
||||
package eu.dnetlib.dhp.countrypropagation;
|
||||
|
||||
import static eu.dnetlib.dhp.PropagationConstant.isSparkSessionManaged;
|
||||
|
||||
import java.io.IOException;
|
||||
import java.nio.file.Files;
|
||||
import java.nio.file.Path;
|
||||
|
||||
import org.apache.commons.io.FileUtils;
|
||||
import org.apache.spark.SparkConf;
|
||||
import org.apache.spark.api.java.JavaRDD;
|
||||
import org.apache.spark.api.java.JavaSparkContext;
|
||||
import org.apache.spark.sql.SparkSession;
|
||||
import org.junit.jupiter.api.AfterAll;
|
||||
import org.junit.jupiter.api.Assertions;
|
||||
import org.junit.jupiter.api.BeforeAll;
|
||||
import org.junit.jupiter.api.Test;
|
||||
|
||||
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||
|
||||
import eu.dnetlib.dhp.schema.oaf.Publication;
|
||||
|
||||
public class ResultCountryPreparationTest {
|
||||
private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
|
||||
|
||||
private static SparkSession spark;
|
||||
|
||||
private static Path workingDir;
|
||||
|
||||
@BeforeAll
|
||||
public static void beforeAll() throws IOException {
|
||||
workingDir = Files.createTempDirectory(ResultCountryPreparationTest.class.getSimpleName());
|
||||
|
||||
SparkConf conf = new SparkConf();
|
||||
conf.setAppName(ResultCountryPreparationTest.class.getSimpleName());
|
||||
|
||||
conf.setMaster("local[*]");
|
||||
conf.set("spark.driver.host", "localhost");
|
||||
conf.set("hive.metastore.local", "true");
|
||||
conf.set("spark.ui.enabled", "false");
|
||||
conf.set("spark.sql.warehouse.dir", workingDir.toString());
|
||||
conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString());
|
||||
|
||||
spark = SparkSession
|
||||
.builder()
|
||||
.appName(ResultCountryPreparationTest.class.getSimpleName())
|
||||
.config(conf)
|
||||
.getOrCreate();
|
||||
}
|
||||
|
||||
@AfterAll
|
||||
public static void afterAll() throws IOException {
|
||||
FileUtils.deleteDirectory(workingDir.toFile());
|
||||
spark.stop();
|
||||
}
|
||||
|
||||
@Test
|
||||
void testPrepareResultCountry() throws Exception {
|
||||
final String sourcePath = getClass()
|
||||
.getResource("/eu/dnetlib/dhp/countrypropagation/graph/publication")
|
||||
.getPath();
|
||||
|
||||
final String preparedInfoPath = getClass()
|
||||
.getResource("/eu/dnetlib/dhp/countrypropagation/datasourcecountry")
|
||||
.getPath();
|
||||
|
||||
PrepareResultCountrySet
|
||||
.main(
|
||||
new String[] {
|
||||
"--isSparkSessionManaged", Boolean.FALSE.toString(),
|
||||
"--workingPath", workingDir.toString() + "/working",
|
||||
"--sourcePath", sourcePath,
|
||||
"--outputPath", workingDir.toString() + "/resultCountry",
|
||||
"--preparedInfoPath", preparedInfoPath,
|
||||
"--resultTableName", Publication.class.getCanonicalName()
|
||||
});
|
||||
|
||||
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
|
||||
|
||||
JavaRDD<ResultCountrySet> tmp = sc
|
||||
.textFile(workingDir.toString() + "/resultCountry")
|
||||
.map(item -> OBJECT_MAPPER.readValue(item, ResultCountrySet.class));
|
||||
|
||||
Assertions.assertEquals(5, tmp.count());
|
||||
|
||||
ResultCountrySet rc = tmp
|
||||
.filter(r -> r.getResultId().equals("50|06cdd3ff4700::49ec404cee4e1452808aabeaffbd3072"))
|
||||
.collect()
|
||||
.get(0);
|
||||
Assertions.assertEquals(1, rc.getCountrySet().size());
|
||||
Assertions.assertEquals("NL", rc.getCountrySet().get(0).getClassid());
|
||||
Assertions.assertEquals("Netherlands", rc.getCountrySet().get(0).getClassname());
|
||||
|
||||
rc = tmp
|
||||
.filter(r -> r.getResultId().equals("50|07b5c0ccd4fe::e7f5459cc97865f2af6e3da964c1250b"))
|
||||
.collect()
|
||||
.get(0);
|
||||
Assertions.assertEquals(1, rc.getCountrySet().size());
|
||||
Assertions.assertEquals("NL", rc.getCountrySet().get(0).getClassid());
|
||||
Assertions.assertEquals("Netherlands", rc.getCountrySet().get(0).getClassname());
|
||||
|
||||
rc = tmp
|
||||
.filter(r -> r.getResultId().equals("50|355e65625b88::e7d48a470b13bda61f7ebe3513e20cb6"))
|
||||
.collect()
|
||||
.get(0);
|
||||
Assertions.assertEquals(2, rc.getCountrySet().size());
|
||||
Assertions
|
||||
.assertTrue(
|
||||
rc
|
||||
.getCountrySet()
|
||||
.stream()
|
||||
.anyMatch(cs -> cs.getClassid().equals("IT") && cs.getClassname().equals("Italy")));
|
||||
Assertions
|
||||
.assertTrue(
|
||||
rc
|
||||
.getCountrySet()
|
||||
.stream()
|
||||
.anyMatch(cs -> cs.getClassid().equals("FR") && cs.getClassname().equals("France")));
|
||||
|
||||
rc = tmp
|
||||
.filter(r -> r.getResultId().equals("50|355e65625b88::74009c567c81b4aa55c813db658734df"))
|
||||
.collect()
|
||||
.get(0);
|
||||
Assertions.assertEquals(2, rc.getCountrySet().size());
|
||||
Assertions
|
||||
.assertTrue(
|
||||
rc
|
||||
.getCountrySet()
|
||||
.stream()
|
||||
.anyMatch(cs -> cs.getClassid().equals("IT") && cs.getClassname().equals("Italy")));
|
||||
Assertions
|
||||
.assertTrue(
|
||||
rc
|
||||
.getCountrySet()
|
||||
.stream()
|
||||
.anyMatch(cs -> cs.getClassid().equals("NL") && cs.getClassname().equals("Netherlands")));
|
||||
|
||||
rc = tmp
|
||||
.filter(r -> r.getResultId().equals("50|355e65625b88::54a1c76f520bb2c8da27d12e42891088"))
|
||||
.collect()
|
||||
.get(0);
|
||||
Assertions.assertEquals(2, rc.getCountrySet().size());
|
||||
Assertions
|
||||
.assertTrue(
|
||||
rc
|
||||
.getCountrySet()
|
||||
.stream()
|
||||
.anyMatch(cs -> cs.getClassid().equals("IT") && cs.getClassname().equals("Italy")));
|
||||
Assertions
|
||||
.assertTrue(
|
||||
rc
|
||||
.getCountrySet()
|
||||
.stream()
|
||||
.anyMatch(cs -> cs.getClassid().equals("FR") && cs.getClassname().equals("France")));
|
||||
|
||||
}
|
||||
}
|
||||
|
|
@ -0,0 +1,3 @@
|
|||
{"dataSourceId":"10|eurocrisdris::fe4903425d9040f680d8610d9079ea14","country":{"classid":"NL","classname":"Netherlands"}}
|
||||
{"dataSourceId":"10|opendoar____::f0dd4a99fba6075a9494772b58f95280","country":{"classid":"IT","classname":"Italy"}}
|
||||
{"dataSourceId":"10|eurocrisdris::9ae43d14471c4b33661fedda6f06b539","country":{"classid":"FR","classname":"France"}}
|
||||
|
|
@ -0,0 +1,11 @@
|
|||
{"accessinfopackage":[],"collectedfrom":[{"key":"10|openaire____::081b82f96300b6a6e3d282bad31cb6e2","value":"Crossref"}],"contentpolicies":[{"classid":"Journal articles","classname":"Journal articles","schemeid":"eosc:contentpolicies","schemename":"eosc:contentpolicies"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"dataprovider":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":false},"datasourcetype":{"classid":"pubsrepository::journal","classname":"Journal","schemeid":"dnet:datasource_typologies","schemename":"dnet:datasource_typologies"},"datasourcetypeui":{"classid":"Journal archive","classname":"Journal archive","schemeid":"dnet:datasource_typologies_ui","schemename":"dnet:datasource_typologies_ui"},"dateofcollection":"2020-07-10","englishname":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":"Estudos Portugueses"},"extraInfo":[],"id":"10|issn___print::a7a2010e75d849442790955162ef4e42","journal":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"issnPrinted":"2447-0546","name":"Estudos Portugueses"},"knowledgegraph":false,"lastupdatetimestamp":1646230297782,"latitude":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":"0.0"},"longitude":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":"0.0"},"namespaceprefix":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":"jrnl24470546"},"odcontenttypes":[],"odlanguages":[],"odnumberofitems":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":"0.0"},"officialname":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":"Estudos Portugueses"},"openairecompatibility":{"classid":"hostedBy","classname":"collected from a compatible aggregator","schemeid":"dnet:datasourceCompatibilityLevel","schemename":"dnet:datasourceCompatibilityLevel"},"originalId":["issn___print::2447-0546"],"pid":[],"policies":[],"serviceprovider":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":false},"subjects":[],"thematic":false,"versioning":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":false}}
|
||||
{"accessinfopackage":[],"collectedfrom":[{"key":"10|openaire____::081b82f96300b6a6e3d282bad31cb6e2","value":"Crossref"}],"contentpolicies":[{"classid":"Journal articles","classname":"Journal articles","schemeid":"eosc:contentpolicies","schemename":"eosc:contentpolicies"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"dataprovider":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":false},"datasourcetype":{"classid":"crissystem","classname":"Journal","schemeid":"dnet:datasource_typologies","schemename":"dnet:datasource_typologies"},"datasourcetypeui":{"classid":"Journal archive","classname":"Journal archive","schemeid":"dnet:datasource_typologies_ui","schemename":"dnet:datasource_typologies_ui"},"dateofcollection":"2020-07-10","englishname":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":"NARCIS"},"extraInfo":[],"id":"10|eurocrisdris::fe4903425d9040f680d8610d9079ea14","journal":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"issnPrinted":"2447-0546","name":"Estudos Portugueses"},"knowledgegraph":false,"lastupdatetimestamp":1646230297782,"latitude":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":"0.0"},"longitude":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":"0.0"},"namespaceprefix":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":"jrnl24470546"},"odcontenttypes":[],"odlanguages":[],"odnumberofitems":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":"0.0"},"officialname":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":"Estudos Portugueses"},"openairecompatibility":{"classid":"hostedBy","classname":"collected from a compatible aggregator","schemeid":"dnet:datasourceCompatibilityLevel","schemename":"dnet:datasourceCompatibilityLevel"},"originalId":["issn___print::2447-0546"],"pid":[],"policies":[],"serviceprovider":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":false},"subjects":[],"thematic":false,"versioning":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":false}}
|
||||
{"accessinfopackage":[],"collectedfrom":[{"key":"10|openaire____::081b82f96300b6a6e3d282bad31cb6e2","value":"Crossref"}],"contentpolicies":[{"classid":"Journal articles","classname":"Journal articles","schemeid":"eosc:contentpolicies","schemename":"eosc:contentpolicies"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"dataprovider":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":false},"datasourcetype":{"classid":"pubsrepository::institutional","classname":"Journal","schemeid":"dnet:datasource_typologies","schemename":"dnet:datasource_typologies"},"datasourcetypeui":{"classid":"Journal archive","classname":"Journal archive","schemeid":"dnet:datasource_typologies_ui","schemename":"dnet:datasource_typologies_ui"},"dateofcollection":"2020-07-10","englishname":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":"BELARUS"},"extraInfo":[],"id":"10|opendoar____::fd272fe04b7d4e68effd01bddcc6bb34","journal":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"issnPrinted":"2447-0546","name":"Estudos Portugueses"},"knowledgegraph":false,"lastupdatetimestamp":1646230297782,"latitude":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":"0.0"},"longitude":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":"0.0"},"namespaceprefix":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":"jrnl24470546"},"odcontenttypes":[],"odlanguages":[],"odnumberofitems":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":"0.0"},"officialname":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":"Estudos Portugueses"},"openairecompatibility":{"classid":"hostedBy","classname":"collected from a compatible aggregator","schemeid":"dnet:datasourceCompatibilityLevel","schemename":"dnet:datasourceCompatibilityLevel"},"originalId":["issn___print::2447-0546"],"pid":[],"policies":[],"serviceprovider":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":false},"subjects":[],"thematic":false,"versioning":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":false}}
|
||||
{"accessinfopackage":[],"collectedfrom":[{"key":"10|openaire____::081b82f96300b6a6e3d282bad31cb6e2","value":"Crossref"}],"contentpolicies":[{"classid":"Journal articles","classname":"Journal articles","schemeid":"eosc:contentpolicies","schemename":"eosc:contentpolicies"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"dataprovider":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":false},"datasourcetype":{"classid":"pubsrepository::institutional","classname":"Journal","schemeid":"dnet:datasource_typologies","schemename":"dnet:datasource_typologies"},"datasourcetypeui":{"classid":"Journal archive","classname":"Journal archive","schemeid":"dnet:datasource_typologies_ui","schemename":"dnet:datasource_typologies_ui"},"dateofcollection":"2020-07-10","englishname":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":"UNIGE"},"extraInfo":[],"id":"10|opendoar____::f0dd4a99fba6075a9494772b58f95280","journal":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"issnPrinted":"2447-0546","name":"Estudos Portugueses"},"knowledgegraph":false,"lastupdatetimestamp":1646230297782,"latitude":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":"0.0"},"longitude":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":"0.0"},"namespaceprefix":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":"jrnl24470546"},"odcontenttypes":[],"odlanguages":[],"odnumberofitems":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":"0.0"},"officialname":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":"Estudos Portugueses"},"openairecompatibility":{"classid":"hostedBy","classname":"collected from a compatible aggregator","schemeid":"dnet:datasourceCompatibilityLevel","schemename":"dnet:datasourceCompatibilityLevel"},"originalId":["issn___print::2447-0546"],"pid":[],"policies":[],"serviceprovider":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":false},"subjects":[],"thematic":false,"versioning":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900"},"value":false}}
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|
||||
{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"propagation","inferred":true,"invisible":false,"provenanceaction":{"classid":"result:organization:instrepo","classname":"Propagation of affiliation to result collected from datasources of type institutional repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.85"},"properties":[],"relClass":"isAuthorInstitutionOf","relType":"resultOrganization","source":"20|openorgs____::548cbb0c5a93722f3a9aa62aa17a1ba1","subRelType":"affiliation","target":"50|dedup_wf_001::0f488ad00253126c14a21abe6b2d406c","validated":false}
|
||||
{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"propagation","inferred":true,"invisible":false,"provenanceaction":{"classid":"result:organization:instrepo","classname":"Propagation of affiliation to result collected from datasources of type institutional repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.85"},"properties":[],"relClass":"hasAuthorInstitution","relType":"resultOrganization","source":"50|dedup_wf_001::0f488ad00253126c14a21abe6b2d406c","subRelType":"affiliation","target":"20|openorgs____::548cbb0c5a93722f3a9aa62aa17a1ba1","validated":false}
|
||||
{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"propagation","inferred":true,"invisible":false,"provenanceaction":{"classid":"result:organization:instrepo","classname":"Propagation of affiliation to result collected from datasources of type institutional repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.85"},"properties":[],"relClass":"isAuthorInstitutionOf","relType":"resultOrganization","source":"20|pending_org_::c522a7c935f9fd9578122e60eeec282c","subRelType":"affiliation","target":"50|dedup_wf_001::12206bf78aabd7d52132477182d19147","validated":false}
|
||||
{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"propagation","inferred":true,"invisible":false,"provenanceaction":{"classid":"result:organization:instrepo","classname":"Propagation of affiliation to result collected from datasources of type institutional repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.85"},"properties":[],"relClass":"hasAuthorInstitution","relType":"resultOrganization","source":"50|dedup_wf_001::12206bf78aabd7d52132477182d19147","subRelType":"affiliation","target":"20|pending_org_::c522a7c935f9fd9578122e60eeec282c","validated":false}
|
||||
|
|
@ -0,0 +1,5 @@
|
|||
{"resultId":"50|07b5c0ccd4fe::e7f5459cc97865f2af6e3da964c1250b","countrySet":[{"classid":"NL","classname":"Netherlands"}]}
|
||||
{"resultId":"50|355e65625b88::54a1c76f520bb2c8da27d12e42891088","countrySet":[{"classid":"IT","classname":"Italy"},{"classid":"FR","classname":"France"}]}
|
||||
{"resultId":"50|06cdd3ff4700::49ec404cee4e1452808aabeaffbd3072","countrySet":[{"classid":"NL","classname":"Netherlands"}]}
|
||||
{"resultId":"50|355e65625b88::74009c567c81b4aa55c813db658734df","countrySet":[{"classid":"NL","classname":"Netherlands"},{"classid":"IT","classname":"Italy"}]}
|
||||
{"resultId":"50|355e65625b88::e7d48a470b13bda61f7ebe3513e20cb6","countrySet":[{"classid":"IT","classname":"Italy"},{"classid":"FR","classname":"France"}]}
|
||||
|
|
@ -8,7 +8,6 @@ import java.io.IOException;
|
|||
import java.io.StringReader;
|
||||
import java.util.List;
|
||||
|
||||
import eu.dnetlib.dhp.schema.oaf.Datasource;
|
||||
import org.apache.commons.io.IOUtils;
|
||||
import org.dom4j.Document;
|
||||
import org.dom4j.DocumentException;
|
||||
|
|
@ -24,6 +23,7 @@ import eu.dnetlib.dhp.oa.provision.model.RelatedEntity;
|
|||
import eu.dnetlib.dhp.oa.provision.model.RelatedEntityWrapper;
|
||||
import eu.dnetlib.dhp.oa.provision.utils.ContextMapper;
|
||||
import eu.dnetlib.dhp.oa.provision.utils.XmlRecordFactory;
|
||||
import eu.dnetlib.dhp.schema.oaf.Datasource;
|
||||
import eu.dnetlib.dhp.schema.oaf.Project;
|
||||
import eu.dnetlib.dhp.schema.oaf.Publication;
|
||||
import eu.dnetlib.dhp.schema.oaf.Relation;
|
||||
|
|
@ -146,10 +146,10 @@ public class XmlRecordFactoryTest {
|
|||
final ContextMapper contextMapper = new ContextMapper();
|
||||
|
||||
final XmlRecordFactory xmlRecordFactory = new XmlRecordFactory(contextMapper, false,
|
||||
XmlConverterJob.schemaLocation);
|
||||
XmlConverterJob.schemaLocation);
|
||||
|
||||
final Datasource d = OBJECT_MAPPER
|
||||
.readValue(IOUtils.toString(getClass().getResourceAsStream("datasource.json")), Datasource.class);
|
||||
.readValue(IOUtils.toString(getClass().getResourceAsStream("datasource.json")), Datasource.class);
|
||||
|
||||
final String xml = xmlRecordFactory.build(new JoinedEntity<>(d));
|
||||
|
||||
|
|
|
|||
Loading…
Reference in New Issue