D-Net
/
dnet-hadoop
14
5
Fork 11
Code Issues 14 Pull Requests 10 Projects 2 Releases 2 Wiki Activity

merged again from beta

This commit is contained in:
Sandro La Bruzzo 2024-04-23 17:34:55 +02:00
parent 073f320c6a 93dd9cc639
commit 0d628cd62b
18 changed files with 713 additions and 20 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

19
dhp-common/src/main/java/eu/dnetlib/dhp/oa/merge/AuthorMerger.java
View File

@ -10,6 +10,7 @@ import org.apache.commons.lang3.StringUtils;
import com.wcohen.ss.JaroWinkler;
import eu.dnetlib.dhp.schema.oaf.Author;
import eu.dnetlib.dhp.schema.oaf.Qualifier;
import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
import eu.dnetlib.pace.model.Person;
import scala.Tuple2;
@ -146,10 +147,20 @@ public class AuthorMerger {
}
public static String pidToComparableString(StructuredProperty pid) {
final String classid = pid.getQualifier().getClassid() != null ? pid.getQualifier().getClassid().toLowerCase()
: "";
return (pid.getQualifier() != null ? classid : "")
+ (pid.getValue() != null ? pid.getValue().toLowerCase() : "");
final String classId = Optional
.ofNullable(pid)
.map(
p -> Optional
.ofNullable(p.getQualifier())
.map(Qualifier::getClassid)
.map(String::toLowerCase)
.orElse(""))
.orElse("");
return Optional
.ofNullable(pid)
.map(StructuredProperty::getValue)
.map(v -> String.join("|", v, classId))
.orElse("");
}
public static int countAuthorsPids(List<Author> authors) {

5
dhp-common/src/main/java/eu/dnetlib/dhp/schema/oaf/utils/MergeUtils.java
View File

@ -270,8 +270,9 @@ public class MergeUtils {
}
HashMap<String, KeyValue> values = new HashMap<>();
left.forEach(kv -> values.put(kv.getKey(), kv));
right.forEach(kv -> values.putIfAbsent(kv.getKey(), kv));
Optional.ofNullable(left).ifPresent(l -> l.forEach(kv -> values.put(kv.getKey(), kv)));
Optional.ofNullable(right).ifPresent(r -> r.forEach(kv -> values.putIfAbsent(kv.getKey(), kv)));
return new ArrayList<>(values.values());
}

5
dhp-pace-core/src/test/java/eu/dnetlib/pace/util/UtilTest.java
View File

@ -7,9 +7,11 @@ import java.util.HashMap;
import java.util.Map;
import org.junit.jupiter.api.BeforeAll;
import org.junit.jupiter.api.Disabled;
import org.junit.jupiter.api.Test;
import eu.dnetlib.pace.model.Person;
import jdk.nashorn.internal.ir.annotations.Ignore;
public class UtilTest {
@ -20,7 +22,8 @@ public class UtilTest {
params = new HashMap<>();
}
// @Test
@Test
@Disabled
public void paceResolverTest() {
PaceResolver paceResolver = new PaceResolver();
paceResolver.getComparator("keywordMatch", params);

3
dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/transformativeagreement/CreateActionSetSparkJob.java
View File

@ -93,7 +93,7 @@ public class CreateActionSetSparkJob implements Serializable {
.filter((FilterFunction<Relation>) Objects::nonNull)
.toJavaRDD()
.map(p -> new AtomicAction(p.getClass(), p));
//TODO relations in stand-by waiting to know if we need to create them or not In case we need just make a union before saving the sequence file
spark
.read()
.textFile(inputPath)
@ -108,6 +108,7 @@ public class CreateActionSetSparkJob implements Serializable {
.filter((FilterFunction<Result>) r -> r != null)
.toJavaRDD()
.map(p -> new AtomicAction(p.getClass(), p))
.union(relations)
.mapToPair(
aa -> new Tuple2<>(new Text(aa.getClazz().getCanonicalName()),
new Text(OBJECT_MAPPER.writeValueAsString(aa))))

232
dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/webcrawl/CreateActionSetFromWebEntries.java Normal file
View File

@ -0,0 +1,232 @@
package eu.dnetlib.dhp.actionmanager.webcrawl;
import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
import java.io.Serializable;
import java.util.*;
import java.util.stream.Collectors;
import org.apache.commons.io.IOUtils;
import org.apache.hadoop.io.Text;
import org.apache.hadoop.io.compress.GzipCodec;
import org.apache.hadoop.mapred.SequenceFileOutputFormat;
import org.apache.spark.SparkConf;
import org.apache.spark.api.java.function.FlatMapFunction;
import org.apache.spark.sql.*;
import org.apache.spark.sql.types.StructType;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.schema.action.AtomicAction;
import eu.dnetlib.dhp.schema.common.ModelConstants;
import eu.dnetlib.dhp.schema.oaf.Relation;
import eu.dnetlib.dhp.schema.oaf.utils.IdentifierFactory;
import eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils;
import eu.dnetlib.dhp.schema.oaf.utils.PidCleaner;
import eu.dnetlib.dhp.schema.oaf.utils.PidType;
import scala.Tuple2;
/**
* @author miriam.baglioni
* @Date 18/04/24
*/
public class CreateActionSetFromWebEntries implements Serializable {
private static final Logger log = LoggerFactory.getLogger(CreateActionSetFromWebEntries.class);
private static final String DOI_PREFIX = "50|doi_________::";
private static final String ROR_PREFIX = "20|ror_________::";
private static final String PMID_PREFIX = "50|pmid________::";
private static final String PMCID_PREFIX = "50|pmc_________::";
private static final String WEB_CRAWL_ID = "10|openaire____::fb98a192f6a055ba495ef414c330834b";
private static final String WEB_CRAWL_NAME = "Web Crawl";
public static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
public static void main(String[] args) throws Exception {
String jsonConfiguration = IOUtils
.toString(
CreateActionSetFromWebEntries.class
.getResourceAsStream(
"/eu/dnetlib/dhp/actionmanager/webcrawl/as_parameters.json"));
final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration);
parser.parseArgument(args);
Boolean isSparkSessionManaged = Optional
.ofNullable(parser.get("isSparkSessionManaged"))
.map(Boolean::valueOf)
.orElse(Boolean.TRUE);
log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
final String inputPath = parser.get("sourcePath");
log.info("inputPath: {}", inputPath);
final String outputPath = parser.get("outputPath");
log.info("outputPath: {}", outputPath);
SparkConf conf = new SparkConf();
runWithSparkSession(
conf,
isSparkSessionManaged,
spark -> {
createActionSet(spark, inputPath, outputPath);
});
}
public static void createActionSet(SparkSession spark, String inputPath,
String outputPath) {
final Dataset<Row> dataset = readWebCrawl(spark, inputPath)
.filter("publication_year <= 2020 or country_code=='IE'")
.drop("publication_year");
dataset.flatMap((FlatMapFunction<Row, Relation>) row -> {
List<Relation> ret = new ArrayList<>();
final String ror = ROR_PREFIX
+ IdentifierFactory.md5(PidCleaner.normalizePidValue("ROR", row.getAs("ror")));
ret.addAll(createAffiliationRelationPairDOI(row.getAs("doi"), ror));
ret.addAll(createAffiliationRelationPairPMID(row.getAs("pmid"), ror));
ret.addAll(createAffiliationRelationPairPMCID(row.getAs("pmcid"), ror));
return ret
.iterator();
}, Encoders.bean(Relation.class))
.toJavaRDD()
.map(p -> new AtomicAction(p.getClass(), p))
.mapToPair(
aa -> new Tuple2<>(new Text(aa.getClazz().getCanonicalName()),
new Text(OBJECT_MAPPER.writeValueAsString(aa))))
.saveAsHadoopFile(outputPath, Text.class, Text.class, SequenceFileOutputFormat.class, GzipCodec.class);
}
private static Dataset<Row> readWebCrawl(SparkSession spark, String inputPath) {
StructType webInfo = StructType
.fromDDL(
"`id` STRING , `doi` STRING, `ids` STRUCT<`pmid` :STRING, `pmcid`: STRING >, `publication_year` STRING, "
+
"`authorships` ARRAY<STRUCT <`institutions`: ARRAY <STRUCT <`ror`: STRING, `country_code` :STRING>>>>");
return spark
.read()
.schema(webInfo)
.json(inputPath)
.withColumn(
"authors", functions
.explode(
functions.col("authorships")))
.selectExpr("id", "doi", "ids", "publication_year", "authors.institutions as institutions")
.withColumn(
"institution", functions
.explode(
functions.col("institutions")))
.selectExpr(
"id", "doi", "ids.pmcid as pmcid", "ids.pmid as pmid", "institution.ror as ror",
"institution.country_code as country_code", "publication_year")
.distinct();
}
private static List<Relation> createAffiliationRelationPairPMCID(String pmcid, String ror) {
if (pmcid == null)
return new ArrayList<>();
return createAffiliatioRelationPair(
PMCID_PREFIX
+ IdentifierFactory
.md5(PidCleaner.normalizePidValue(PidType.pmc.toString(), removeResolver("PMC", pmcid))),
ror);
}
private static List<Relation> createAffiliationRelationPairPMID(String pmid, String ror) {
if (pmid == null)
return new ArrayList<>();
return createAffiliatioRelationPair(
PMID_PREFIX
+ IdentifierFactory
.md5(PidCleaner.normalizePidValue(PidType.pmid.toString(), removeResolver("PMID", pmid))),
ror);
}
private static String removeResolver(String pidType, String pid) {
switch (pidType) {
case "PMID":
return pid.substring(33);
case "PMC":
return "PMC" + pid.substring(43);
case "DOI":
return pid.substring(16);
}
throw new RuntimeException();
}
private static List<Relation> createAffiliationRelationPairDOI(String doi, String ror) {
if (doi == null)
return new ArrayList<>();
return createAffiliatioRelationPair(
DOI_PREFIX
+ IdentifierFactory
.md5(PidCleaner.normalizePidValue(PidType.doi.toString(), removeResolver("DOI", doi))),
ror);
}
private static List<Relation> createAffiliatioRelationPair(String resultId, String orgId) {
ArrayList<Relation> newRelations = new ArrayList();
newRelations
.add(
OafMapperUtils
.getRelation(
orgId, resultId, ModelConstants.RESULT_ORGANIZATION, ModelConstants.AFFILIATION,
ModelConstants.IS_AUTHOR_INSTITUTION_OF,
Arrays
.asList(
OafMapperUtils.keyValue(WEB_CRAWL_ID, WEB_CRAWL_NAME)),
OafMapperUtils
.dataInfo(
false, null, false, false,
OafMapperUtils
.qualifier(
"sysimport:crasswalk:webcrawl", "Imported from Webcrawl",
ModelConstants.DNET_PROVENANCE_ACTIONS, ModelConstants.DNET_PROVENANCE_ACTIONS),
"0.9"),
null));
newRelations
.add(
OafMapperUtils
.getRelation(
resultId, orgId, ModelConstants.RESULT_ORGANIZATION, ModelConstants.AFFILIATION,
ModelConstants.HAS_AUTHOR_INSTITUTION,
Arrays
.asList(
OafMapperUtils.keyValue(WEB_CRAWL_ID, WEB_CRAWL_NAME)),
OafMapperUtils
.dataInfo(
false, null, false, false,
OafMapperUtils
.qualifier(
"sysimport:crasswalk:webcrawl", "Imported from Webcrawl",
ModelConstants.DNET_PROVENANCE_ACTIONS, ModelConstants.DNET_PROVENANCE_ACTIONS),
"0.9"),
null));
return newRelations;
}
}

20
dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/webcrawl/as_parameters.json Normal file
View File

@ -0,0 +1,20 @@
[
{
"paramName": "sp",
"paramLongName": "sourcePath",
"paramDescription": "the zipped opencitations file",
"paramRequired": true
},
{
"paramName": "op",
"paramLongName": "outputPath",
"paramDescription": "the working path",
"paramRequired": true
},
{
"paramName": "issm",
"paramLongName": "isSparkSessionManaged",
"paramDescription": "the hdfs name node",
"paramRequired": false
}
]

2
dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/webcrawl/job.properties Normal file
View File

@ -0,0 +1,2 @@
sourcePath=/user/miriam.baglioni/openalex-snapshot/data/works/
outputPath=/tmp/miriam/webcrawlComplete/

58
dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/webcrawl/oozie_app/config-default.xml Normal file
View File

@ -0,0 +1,58 @@
<configuration>
<property>
<name>jobTracker</name>
<value>yarnRM</value>
</property>
<property>
<name>nameNode</name>
<value>hdfs://nameservice1</value>
</property>
<property>
<name>oozie.use.system.libpath</name>
<value>true</value>
</property>
<property>
<name>oozie.action.sharelib.for.spark</name>
<value>spark2</value>
</property>
<property>
<name>hive_metastore_uris</name>
<value>thrift://iis-cdh5-test-m3.ocean.icm.edu.pl:9083</value>
</property>
<property>
<name>spark2YarnHistoryServerAddress</name>
<value>http://iis-cdh5-test-gw.ocean.icm.edu.pl:18089</value>
</property>
<property>
<name>spark2ExtraListeners</name>
<value>com.cloudera.spark.lineage.NavigatorAppListener</value>
</property>
<property>
<name>spark2SqlQueryExecutionListeners</name>
<value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
</property>
<property>
<name>oozie.launcher.mapreduce.user.classpath.first</name>
<value>true</value>
</property>
<property>
<name>sparkExecutorNumber</name>
<value>4</value>
</property>
<property>
<name>spark2EventLogDir</name>
<value>/user/spark/spark2ApplicationHistory</value>
</property>
<property>
<name>sparkDriverMemory</name>
<value>15G</value>
</property>
<property>
<name>sparkExecutorMemory</name>
<value>6G</value>
</property>
<property>
<name>sparkExecutorCores</name>
<value>1</value>
</property>
</configuration>

53
dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/webcrawl/oozie_app/workflow.xml Normal file
View File

@ -0,0 +1,53 @@
<workflow-app name="WebCrawl Integration" xmlns="uri:oozie:workflow:0.5">
<global>
<job-tracker>${jobTracker}</job-tracker>
<name-node>${nameNode}</name-node>
<configuration>
<property>
<name>mapreduce.job.queuename</name>
<value>${queueName}</value>
</property>
<property>
<name>oozie.launcher.mapred.job.queue.name</name>
<value>${oozieLauncherQueueName}</value>
</property>
<property>
<name>oozie.action.sharelib.for.spark</name>
<value>${oozieActionShareLibForSpark2}</value>
</property>
</configuration>
</global>
<start to="create_actionset"/>
<kill name="Kill">
<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
</kill>
<action name="create_actionset">
<spark xmlns="uri:oozie:spark-action:0.2">
<master>yarn</master>
<mode>cluster</mode>
<name>Produces the AS for WC</name>
<class>eu.dnetlib.dhp.actionmanager.webcrawl.CreateActionSetFromWebEntries</class>
<jar>dhp-aggregation-${projectVersion}.jar</jar>
<spark-opts>
--executor-memory=${sparkExecutorMemory}
--executor-cores=${sparkExecutorCores}
--driver-memory=${sparkDriverMemory}
--conf spark.extraListeners=${spark2ExtraListeners}
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
</spark-opts>
<arg>--sourcePath</arg><arg>${sourcePath}</arg>
<arg>--outputPath</arg><arg>${outputPath}</arg>
</spark>
<ok to="End"/>
<error to="Kill"/>
</action>
<end name="End"/>
</workflow-app>

6
dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/collection/crossref/irish_funder.json
View File

@ -271,12 +271,6 @@
"name": "An Roinn Sl\u00e1inte",
"synonym": []
},
{
"id": "100018998",
"uri": "http://dx.doi.org/10.13039/100018998",
"name": "Irish Research eLibrary",
"synonym": []
},
{
"id": "100019428",
"uri": "http://dx.doi.org/10.13039/100019428",

287
dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/actionmanager/webcrawl/CreateASTest.java Normal file
View File

@ -0,0 +1,287 @@
package eu.dnetlib.dhp.actionmanager.webcrawl;
import static org.junit.jupiter.api.Assertions.assertEquals;
import java.io.IOException;
import java.nio.file.Files;
import java.nio.file.Path;
import org.apache.commons.io.FileUtils;
import org.apache.hadoop.io.Text;
import org.apache.spark.SparkConf;
import org.apache.spark.api.java.JavaRDD;
import org.apache.spark.api.java.JavaSparkContext;
import org.apache.spark.sql.SparkSession;
import org.junit.jupiter.api.AfterAll;
import org.junit.jupiter.api.Assertions;
import org.junit.jupiter.api.BeforeAll;
import org.junit.jupiter.api.Test;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.schema.action.AtomicAction;
import eu.dnetlib.dhp.schema.oaf.Relation;
import eu.dnetlib.dhp.schema.oaf.utils.IdentifierFactory;
import eu.dnetlib.dhp.schema.oaf.utils.PidCleaner;
import eu.dnetlib.dhp.schema.oaf.utils.PidType;
/**
* @author miriam.baglioni
* @Date 22/04/24
*/
public class CreateASTest {
private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
private static SparkSession spark;
private static Path workingDir;
private static final Logger log = LoggerFactory
.getLogger(CreateASTest.class);
@BeforeAll
public static void beforeAll() throws IOException {
workingDir = Files
.createTempDirectory(CreateASTest.class.getSimpleName());
log.info("using work dir {}", workingDir);
SparkConf conf = new SparkConf();
conf.setAppName(CreateASTest.class.getSimpleName());
conf.setMaster("local[*]");
conf.set("spark.driver.host", "localhost");
conf.set("hive.metastore.local", "true");
conf.set("spark.ui.enabled", "false");
conf.set("spark.sql.warehouse.dir", workingDir.toString());
conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString());
spark = SparkSession
.builder()
.appName(CreateASTest.class.getSimpleName())
.config(conf)
.getOrCreate();
}
@AfterAll
public static void afterAll() throws IOException {
FileUtils.deleteDirectory(workingDir.toFile());
spark.stop();
}
@Test
void testNumberofRelations() throws Exception {
String inputPath = getClass()
.getResource(
"/eu/dnetlib/dhp/actionmanager/webcrawl/")
.getPath();
CreateActionSetFromWebEntries
.main(
new String[] {
"-isSparkSessionManaged",
Boolean.FALSE.toString(),
"-sourcePath",
inputPath,
"-outputPath",
workingDir.toString() + "/actionSet1"
});
final JavaSparkContext sc = new JavaSparkContext(spark.sparkContext());
JavaRDD<Relation> tmp = sc
.sequenceFile(workingDir.toString() + "/actionSet1", Text.class, Text.class)
.map(value -> OBJECT_MAPPER.readValue(value._2().toString(), AtomicAction.class))
.map(aa -> ((Relation) aa.getPayload()));
Assertions.assertEquals(64, tmp.count());
}
@Test
void testRelations() throws Exception {
// , "doi":"https://doi.org/10.1126/science.1188021", "pmid":"https://pubmed.ncbi.nlm.nih.gov/20448178", https://www.ncbi.nlm.nih.gov/pmc/articles/5100745
String inputPath = getClass()
.getResource(
"/eu/dnetlib/dhp/actionmanager/webcrawl/")
.getPath();
CreateActionSetFromWebEntries
.main(
new String[] {
"-isSparkSessionManaged",
Boolean.FALSE.toString(),
"-sourcePath",
inputPath,
"-outputPath",
workingDir.toString() + "/actionSet1"
});
final JavaSparkContext sc = new JavaSparkContext(spark.sparkContext());
JavaRDD<Relation> tmp = sc
.sequenceFile(workingDir.toString() + "/actionSet1", Text.class, Text.class)
.map(value -> OBJECT_MAPPER.readValue(value._2().toString(), AtomicAction.class))
.map(aa -> ((Relation) aa.getPayload()));
tmp.foreach(r -> System.out.println(new ObjectMapper().writeValueAsString(r)));
Assertions
.assertEquals(
1, tmp
.filter(
r -> r
.getSource()
.equals(
"50|doi_________::" + IdentifierFactory
.md5(
PidCleaner
.normalizePidValue(PidType.doi.toString(), "10.1098/rstl.1684.0023"))))
.count());
Assertions
.assertEquals(
1, tmp
.filter(
r -> r
.getTarget()
.equals(
"50|doi_________::" + IdentifierFactory
.md5(
PidCleaner
.normalizePidValue(PidType.doi.toString(), "10.1098/rstl.1684.0023"))))
.count());
Assertions
.assertEquals(
1, tmp
.filter(
r -> r
.getSource()
.equals(
"20|ror_________::" + IdentifierFactory
.md5(
PidCleaner
.normalizePidValue("ROR", "https://ror.org/03argrj65"))))
.count());
Assertions
.assertEquals(
1, tmp
.filter(
r -> r
.getTarget()
.equals(
"20|ror_________::" + IdentifierFactory
.md5(
PidCleaner
.normalizePidValue("ROR", "https://ror.org/03argrj65"))))
.count());
Assertions
.assertEquals(
5, tmp
.filter(
r -> r
.getSource()
.equals(
"20|ror_________::" + IdentifierFactory
.md5(
PidCleaner
.normalizePidValue("ROR", "https://ror.org/03265fv13"))))
.count());
Assertions
.assertEquals(
5, tmp
.filter(
r -> r
.getTarget()
.equals(
"20|ror_________::" + IdentifierFactory
.md5(
PidCleaner
.normalizePidValue("ROR", "https://ror.org/03265fv13"))))
.count());
Assertions
.assertEquals(
2, tmp
.filter(
r -> r
.getTarget()
.equals(
"20|ror_________::" + IdentifierFactory
.md5(
PidCleaner
.normalizePidValue(PidType.doi.toString(), "https://ror.org/03265fv13")))
&& r.getSource().startsWith("50|doi"))
.count());
Assertions
.assertEquals(
2, tmp
.filter(
r -> r
.getTarget()
.equals(
"20|ror_________::" + IdentifierFactory
.md5(
PidCleaner
.normalizePidValue(PidType.doi.toString(), "https://ror.org/03265fv13")))
&& r.getSource().startsWith("50|pmid"))
.count());
Assertions
.assertEquals(
1, tmp
.filter(
r -> r
.getTarget()
.equals(
"20|ror_________::" + IdentifierFactory
.md5(
PidCleaner
.normalizePidValue(PidType.doi.toString(), "https://ror.org/03265fv13")))
&& r.getSource().startsWith("50|pmc"))
.count());
}
@Test
void testRelationsCollectedFrom() throws Exception {
String inputPath = getClass()
.getResource(
"/eu/dnetlib/dhp/actionmanager/webcrawl")
.getPath();
CreateActionSetFromWebEntries
.main(
new String[] {
"-isSparkSessionManaged",
Boolean.FALSE.toString(),
"-sourcePath",
inputPath,
"-outputPath",
workingDir.toString() + "/actionSet1"
});
final JavaSparkContext sc = new JavaSparkContext(spark.sparkContext());
JavaRDD<Relation> tmp = sc
.sequenceFile(workingDir.toString() + "/actionSet1", Text.class, Text.class)
.map(value -> OBJECT_MAPPER.readValue(value._2().toString(), AtomicAction.class))
.map(aa -> ((Relation) aa.getPayload()));
tmp.foreach(r -> {
assertEquals("Web Crawl", r.getCollectedfrom().get(0).getValue());
assertEquals("10|openaire____::fb98a192f6a055ba495ef414c330834b", r.getCollectedfrom().get(0).getKey());
});
}
}

1
dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/actionmanager/webcrawl/part-00000 Normal file
View File

File diff suppressed because one or more lines are too long

10
dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/actionmanager/webcrawl/part-00001 Normal file
View File

File diff suppressed because one or more lines are too long

1
dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/actionmanager/webcrawl/part-00002 Normal file
View File

File diff suppressed because one or more lines are too long

13
dhp-workflows/dhp-doiboost/src/test/java/eu/dnetlib/doiboost/orcid/OrcidClientTest.java
View File

@ -47,7 +47,7 @@ public class OrcidClientTest {
private static Path testPath;
@BeforeAll
private static void setUp() throws IOException {
public static void setUp() throws IOException {
testPath = Files.createTempDirectory(OrcidClientTest.class.getName());
System.out.println("using test path: " + testPath);
}
@ -150,8 +150,9 @@ public class OrcidClientTest {
System.out.println(valueDt.toString());
}
// @Test
private void testModifiedDate() throws ParseException {
@Test
@Disabled
public void testModifiedDate() throws ParseException {
testDate(toRetrieveDate);
testDate(toNotRetrieveDate);
testDate(shortDate);
@ -224,7 +225,7 @@ public class OrcidClientTest {
@Test
@Disabled
private void slowedDownDownloadTest() throws Exception {
public void slowedDownDownloadTest() throws Exception {
String orcid = "0000-0001-5496-1243";
String record = slowedDownDownload(orcid);
String filename = "/tmp/downloaded_".concat(orcid).concat(".xml");
@ -330,6 +331,7 @@ public class OrcidClientTest {
}
@Test
@Disabled
void testUpdatedRecord() throws Exception {
final String base64CompressedRecord = IOUtils
.toString(getClass().getResourceAsStream("0000-0001-7281-6306.compressed.base64"));
@ -338,6 +340,7 @@ public class OrcidClientTest {
}
@Test
@Disabled
void testUpdatedWork() throws Exception {
final String base64CompressedWork = "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";
final String work = ArgumentApplicationParser.decompressValue(base64CompressedWork);
@ -409,6 +412,7 @@ public class OrcidClientTest {
}
@Test
@Disabled
void testDownloadedAuthor() throws Exception {
final String base64CompressedWork = "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";
final String work = ArgumentApplicationParser.decompressValue(base64CompressedWork);
@ -416,6 +420,7 @@ public class OrcidClientTest {
}
@Test
@Disabled
void testDownloadedWork() throws Exception {
final String base64CompressedWork = "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";
final String work = ArgumentApplicationParser.decompressValue(base64CompressedWork);

2
dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/sql/queryProjects.sql
View File

@ -33,7 +33,7 @@ SELECT
dc.officialname AS collectedfromname,
p.contracttype || '@@@' || p.contracttypescheme AS contracttype,
p.provenanceactionclass || '@@@' || p.provenanceactionscheme AS provenanceaction,
array_remove(array_agg(DISTINCT i.pid || '###' || i.issuertype || '@@@' || i.issuertype), NULL) AS pid,,
array_remove(array_agg(DISTINCT i.pid || '###' || i.issuertype || '@@@' || i.issuertype), NULL) AS pid,
array_agg(DISTINCT s.name || '###' || s.semanticclass || '@@@' || s.semanticscheme) AS subjects,
array_agg(DISTINCT fp.path) AS fundingtree

14
dhp-workflows/dhp-graph-provision/src/main/resources/eu/dnetlib/dhp/oa/provision/oozie_app/workflow.xml
View File

@ -185,6 +185,7 @@
--executor-cores=${sparkExecutorCoresForJoining}
--executor-memory=${sparkExecutorMemoryForJoining}
--driver-memory=${sparkDriverMemoryForJoining}
--conf spark.executor.memoryOverhead=${sparkExecutorMemoryForJoining}
--conf spark.extraListeners=${spark2ExtraListeners}
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
@ -212,6 +213,7 @@
--executor-cores=${sparkExecutorCoresForJoining}
--executor-memory=${sparkExecutorMemoryForJoining}
--driver-memory=${sparkDriverMemoryForJoining}
--conf spark.executor.memoryOverhead=${sparkExecutorMemoryForJoining}
--conf spark.extraListeners=${spark2ExtraListeners}
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
@ -239,6 +241,7 @@
--executor-cores=${sparkExecutorCoresForJoining}
--executor-memory=${sparkExecutorMemoryForJoining}
--driver-memory=${sparkDriverMemoryForJoining}
--conf spark.executor.memoryOverhead=${sparkExecutorMemoryForJoining}
--conf spark.extraListeners=${spark2ExtraListeners}
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
@ -266,6 +269,7 @@
--executor-cores=${sparkExecutorCoresForJoining}
--executor-memory=${sparkExecutorMemoryForJoining}
--driver-memory=${sparkDriverMemoryForJoining}
--conf spark.executor.memoryOverhead=${sparkExecutorMemoryForJoining}
--conf spark.extraListeners=${spark2ExtraListeners}
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
@ -293,6 +297,7 @@
--executor-cores=${sparkExecutorCoresForJoining}
--executor-memory=${sparkExecutorMemoryForJoining}
--driver-memory=${sparkDriverMemoryForJoining}
--conf spark.executor.memoryOverhead=${sparkExecutorMemoryForJoining}
--conf spark.extraListeners=${spark2ExtraListeners}
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
@ -320,6 +325,7 @@
--executor-cores=${sparkExecutorCoresForJoining}
--executor-memory=${sparkExecutorMemoryForJoining}
--driver-memory=${sparkDriverMemoryForJoining}
--conf spark.executor.memoryOverhead=${sparkExecutorMemoryForJoining}
--conf spark.extraListeners=${spark2ExtraListeners}
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
@ -347,6 +353,7 @@
--executor-cores=${sparkExecutorCoresForJoining}
--executor-memory=${sparkExecutorMemoryForJoining}
--driver-memory=${sparkDriverMemoryForJoining}
--conf spark.executor.memoryOverhead=${sparkExecutorMemoryForJoining}
--conf spark.extraListeners=${spark2ExtraListeners}
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
@ -386,6 +393,7 @@
--executor-cores=${sparkExecutorCoresForJoining}
--executor-memory=${sparkExecutorMemoryForJoining}
--driver-memory=${sparkDriverMemoryForJoining}
--conf spark.executor.memoryOverhead=${sparkExecutorMemoryForJoining}
--conf spark.extraListeners=${spark2ExtraListeners}
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
@ -414,6 +422,7 @@
--executor-cores=${sparkExecutorCoresForJoining}
--executor-memory=${sparkExecutorMemoryForJoining}
--driver-memory=${sparkDriverMemoryForJoining}
--conf spark.executor.memoryOverhead=${sparkExecutorMemoryForJoining}
--conf spark.extraListeners=${spark2ExtraListeners}
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
@ -442,6 +451,7 @@
--executor-cores=${sparkExecutorCoresForJoining}
--executor-memory=${sparkExecutorMemoryForJoining}
--driver-memory=${sparkDriverMemoryForJoining}
--conf spark.executor.memoryOverhead=${sparkExecutorMemoryForJoining}
--conf spark.extraListeners=${spark2ExtraListeners}
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
@ -470,6 +480,7 @@
--executor-cores=${sparkExecutorCoresForJoining}
--executor-memory=${sparkExecutorMemoryForJoining}
--driver-memory=${sparkDriverMemoryForJoining}
--conf spark.executor.memoryOverhead=${sparkExecutorMemoryForJoining}
--conf spark.extraListeners=${spark2ExtraListeners}
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
@ -498,6 +509,7 @@
--executor-cores=${sparkExecutorCoresForJoining}
--executor-memory=${sparkExecutorMemoryForJoining}
--driver-memory=${sparkDriverMemoryForJoining}
--conf spark.executor.memoryOverhead=${sparkExecutorMemoryForJoining}
--conf spark.extraListeners=${spark2ExtraListeners}
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
@ -526,6 +538,7 @@
--executor-cores=${sparkExecutorCoresForJoining}
--executor-memory=${sparkExecutorMemoryForJoining}
--driver-memory=${sparkDriverMemoryForJoining}
--conf spark.executor.memoryOverhead=${sparkExecutorMemoryForJoining}
--conf spark.extraListeners=${spark2ExtraListeners}
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
@ -554,6 +567,7 @@
--executor-cores=${sparkExecutorCoresForJoining}
--executor-memory=${sparkExecutorMemoryForJoining}
--driver-memory=${sparkDriverMemoryForJoining}
--conf spark.executor.memoryOverhead=${sparkExecutorMemoryForJoining}
--conf spark.extraListeners=${spark2ExtraListeners}
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}

2
pom.xml
View File

@ -960,7 +960,7 @@
<commons.logging.version>1.1.3</commons.logging.version>
<commons-validator.version>1.7</commons-validator.version>
<dateparser.version>1.0.7</dateparser.version>
<dhp-schemas.version>[6.1.0]</dhp-schemas.version>
<dhp-schemas.version>[6.1.1]</dhp-schemas.version>
<dhp.cdh.version>cdh5.9.2</dhp.cdh.version>
<dhp.commons.lang.version>3.5</dhp.commons.lang.version>
<dhp.guava.version>11.0.2</dhp.guava.version>