dnet-hadoop/dhp-workflows/dhp-propagation/src/main/resources/eu/dnetlib/dhp/orcidtoresultfromsemrel/oozie_app/workflow.xml

<workflow-app name="orcid_to_result_from_semrel_propagation" xmlns="uri:oozie:workflow:0.5">
<parameters>
    <property>
        <name>sourcePath</name>
        <description>the source path</description>
    </property>
    <property>
        <name>allowedsemrels</name>
        <description>the semantic relationships allowed for propagation</description>
    </property>
    <property>
        <name>writeUpdate</name>
        <description>writes the information found for the update. No double check done if the information is already present</description>
    </property>
    <property>
        <name>saveGraph</name>
        <description>writes new version of the graph after the propagation step</description>
    </property>
</parameters>

<start to="fork_prepare_assoc_step1"/>

<kill name="Kill">
    <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
</kill>

    <fork name="fork_prepare_assoc_step1">
        <path start="join_prepare_publication"/>
        <path start="join_prepare_dataset"/>
        <path start="join_prepare_otherresearchproduct"/>
        <path start="join_prepare_software"/>
    </fork>

    <action name="join_prepare_publication">
        <spark xmlns="uri:oozie:spark-action:0.2">
            <master>yarn</master>
            <mode>cluster</mode>
            <name>ORCIDpropagationFromSemRel</name>
            <class>eu.dnetlib.dhp.orcidtoresultfromsemrel.PrepareResultOrcidAssociationStep1</class>
            <jar>dhp-propagation-${projectVersion}.jar</jar>
            <spark-opts>
                --executor-cores=${sparkExecutorCores}
                --executor-memory=${sparkExecutorMemory}
                --driver-memory=${sparkDriverMemory}
                --conf spark.extraListeners=${spark2ExtraListeners}
                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
                --conf spark.dynamicAllocation.enabled=true
                --conf spark.dynamicAllocation.maxExecutors=${spark2MaxExecutors}
            </spark-opts>
            <arg>--sourcePath</arg><arg>${sourcePath}</arg>
            <arg>--hive_metastore_uris</arg><arg>${hive_metastore_uris}</arg>
            <arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.Publication</arg>
            <arg>--outputPath</arg><arg>${workingDir}/preparedInfo/targetOrcidAssoc</arg>
            <arg>--allowedsemrels</arg><arg>${allowedsemrels}</arg>
        </spark>
        <ok to="wait"/>
        <error to="Kill"/>
    </action>

    <action name="join_prepare_dataset">
        <spark xmlns="uri:oozie:spark-action:0.2">
            <master>yarn</master>
            <mode>cluster</mode>
            <name>ORCIDpropagationFromSemRel</name>
            <class>eu.dnetlib.dhp.orcidtoresultfromsemrel.PrepareResultOrcidAssociationStep1</class>
            <jar>dhp-propagation-${projectVersion}.jar</jar>
            <spark-opts>
                --executor-cores=${sparkExecutorCores}
                --executor-memory=${sparkExecutorMemory}
                --driver-memory=${sparkDriverMemory}
                --conf spark.extraListeners=${spark2ExtraListeners}
                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
                --conf spark.dynamicAllocation.enabled=true
                --conf spark.dynamicAllocation.maxExecutors=${spark2MaxExecutors}
            </spark-opts>
            <arg>--sourcePath</arg><arg>${sourcePath}</arg>
            <arg>--hive_metastore_uris</arg><arg>${hive_metastore_uris}</arg>
            <arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.Dataset</arg>
            <arg>--outputPath</arg><arg>${workingDir}/preparedInfo/targetOrcidAssoc</arg>
            <arg>--allowedsemrels</arg><arg>${allowedsemrels}</arg>
        </spark>
        <ok to="wait"/>
        <error to="Kill"/>
    </action>

    <action name="join_prepare_otherresearchproduct">
        <spark xmlns="uri:oozie:spark-action:0.2">
            <master>yarn</master>
            <mode>cluster</mode>
            <name>ORCIDpropagationFromSemRel</name>
            <class>eu.dnetlib.dhp.orcidtoresultfromsemrel.PrepareResultOrcidAssociationStep1</class>
            <jar>dhp-propagation-${projectVersion}.jar</jar>
            <spark-opts>
                --executor-cores=${sparkExecutorCores}
                --executor-memory=${sparkExecutorMemory}
                --driver-memory=${sparkDriverMemory}
                --conf spark.extraListeners=${spark2ExtraListeners}
                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
                --conf spark.dynamicAllocation.enabled=true
                --conf spark.dynamicAllocation.maxExecutors=${spark2MaxExecutors}
            </spark-opts>
            <arg>--sourcePath</arg><arg>${sourcePath}</arg>
            <arg>--hive_metastore_uris</arg><arg>${hive_metastore_uris}</arg>
            <arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.OtherResearchProduct</arg>
            <arg>--outputPath</arg><arg>${workingDir}/preparedInfo/targetOrcidAssoc</arg>
            <arg>--allowedsemrels</arg><arg>${allowedsemrels}</arg>
        </spark>
        <ok to="wait"/>
        <error to="Kill"/>
    </action>

    <action name="join_prepare_software">
        <spark xmlns="uri:oozie:spark-action:0.2">
            <master>yarn</master>
            <mode>cluster</mode>
            <name>ORCIDpropagationFromSemRel</name>
            <class>eu.dnetlib.dhp.orcidtoresultfromsemrel.PrepareResultOrcidAssociationStep1</class>
            <jar>dhp-propagation-${projectVersion}.jar</jar>
            <spark-opts>
                --executor-cores=${sparkExecutorCores}
                --executor-memory=${sparkExecutorMemory}
                --driver-memory=${sparkDriverMemory}
                --conf spark.extraListeners=${spark2ExtraListeners}
                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
                --conf spark.dynamicAllocation.enabled=true
                --conf spark.dynamicAllocation.maxExecutors=${spark2MaxExecutors}
            </spark-opts>
            <arg>--sourcePath</arg><arg>${sourcePath}</arg>
            <arg>--hive_metastore_uris</arg><arg>${hive_metastore_uris}</arg>
            <arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.Software</arg>
            <arg>--outputPath</arg><arg>${workingDir}/preparedInfo/targetOrcidAssoc</arg>
            <arg>--allowedsemrels</arg><arg>${allowedsemrels}</arg>
        </spark>
        <ok to="End"/>
        <error to="Kill"/>
    </action>



<action name="OrcidToResultFromSemRelPropagation">
    <spark xmlns="uri:oozie:spark-action:0.2">
        <job-tracker>${jobTracker}</job-tracker>
        <name-node>${nameNode}</name-node>
        <master>yarn-cluster</master>
        <mode>cluster</mode>
        <name>OrcidToResultFromSemRelPropagation</name>
        <class>eu.dnetlib.dhp.orcidtoresultfromsemrel.SparkOrcidToResultFromSemRelJob</class>
        <jar>dhp-propagation-${projectVersion}.jar</jar>
        <spark-opts>
            --num-executors=${sparkExecutorNumber}
            --executor-memory=${sparkExecutorMemory}
            --executor-cores=${sparkExecutorCores}
            --driver-memory=${sparkDriverMemory}
            --conf spark.extraListeners=${spark2ExtraListeners}
            --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
            --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
            --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
            --conf spark.dynamicAllocation.enabled=true
            --conf spark.dynamicAllocation.maxExecutors=${spark2MaxExecutors}
        </spark-opts>
        <arg>-mt</arg> <arg>yarn-cluster</arg>
        <arg>--sourcePath</arg><arg>${sourcePath}</arg>
        <arg>--allowedsemrels</arg><arg>${allowedsemrels}</arg>
        <arg>--writeUpdate</arg><arg>${writeUpdate}</arg>
        <arg>--saveGraph</arg><arg>${saveGraph}</arg>
    </spark>
    <ok to="End"/>
    <error to="Kill"/>
</action>

    <join name="wait" to="prepare_assoc_step2"/>

    <action name="prepare_assoc_step2">
        <spark xmlns="uri:oozie:spark-action:0.2">
            <master>yarn</master>
            <mode>cluster</mode>
            <name>ORCIDpropagationFromSemRel</name>
            <class>eu.dnetlib.dhp.orcidtoresultfromsemrel.PrepareResultOrcidAssociationStep2</class>
            <jar>dhp-propagation-${projectVersion}.jar</jar>
            <spark-opts>
                --executor-cores=${sparkExecutorCores}
                --executor-memory=${sparkExecutorMemory}
                --driver-memory=${sparkDriverMemory}
                --conf spark.extraListeners=${spark2ExtraListeners}
                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
                --conf spark.dynamicAllocation.enabled=true
                --conf spark.dynamicAllocation.maxExecutors=${spark2MaxExecutors}
            </spark-opts>
            <arg>--sourcePath</arg><arg>${workingDir}/preparedInfo/targetOrcidAssoc</arg>
            <arg>--outputPath</arg><arg>${workingDir}/preparedInfo/mergedOrcidAssoc</arg>
        </spark>
<!--        <ok to="fork-join-exec-propagation"/>-->
        <ok to="End"/>
        <error to="Kill"/>

    </action>
    <fork name="fork-join-exec-propagation">
        <path start="join_propagate_publication"/>
        <path start="join_propagate_dataset"/>
        <path start="join_propagate_otherresearchproduct"/>
        <path start="join_propagate_software"/>
    </fork>

    <action name="join_propagate_publication">
        <spark xmlns="uri:oozie:spark-action:0.2">
            <master>yarn</master>
            <mode>cluster</mode>
            <name>ORCIDpropagationFromSemRel</name>
            <class>eu.dnetlib.dhp.orcidtoresultfromsemrel.SparkOrcidToResultFromSemRelJob3</class>
            <jar>dhp-propagation-${projectVersion}.jar</jar>
            <spark-opts>
                --executor-cores=${sparkExecutorCores}
                --executor-memory=${sparkExecutorMemory}
                --driver-memory=${sparkDriverMemory}
                --conf spark.extraListeners=${spark2ExtraListeners}
                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
                --conf spark.dynamicAllocation.enabled=true
                --conf spark.dynamicAllocation.maxExecutors=${spark2MaxExecutors}
            </spark-opts>
            <arg>--sourcePath</arg><arg>${workingDir}/preparedInfo/mergedOrcidAssoc</arg>
            <arg>--hive_metastore_uris</arg><arg>${hive_metastore_uris}</arg>
            <arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.Publication</arg>
            <arg>--outputPath</arg><arg>${workingDir}/publication</arg>
        </spark>
        <ok to="wait2"/>
        <error to="Kill"/>
    </action>
    <action name="join_propagate_dataset">
        <spark xmlns="uri:oozie:spark-action:0.2">
            <master>yarn</master>
            <mode>cluster</mode>
            <name>ORCIDpropagationFromSemRel</name>
            <class>eu.dnetlib.dhp.orcidtoresultfromsemrel.SparkOrcidToResultFromSemRelJob3</class>
            <jar>dhp-propagation-${projectVersion}.jar</jar>
            <spark-opts>
                --executor-cores=${sparkExecutorCores}
                --executor-memory=${sparkExecutorMemory}
                --driver-memory=${sparkDriverMemory}
                --conf spark.extraListeners=${spark2ExtraListeners}
                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
                --conf spark.dynamicAllocation.enabled=true
                --conf spark.dynamicAllocation.maxExecutors=${spark2MaxExecutors}
            </spark-opts>
            <arg>--sourcePath</arg><arg>${workingDir}/preparedInfo/mergedOrcidAssoc</arg>
            <arg>--hive_metastore_uris</arg><arg>${hive_metastore_uris}</arg>
            <arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.Dataset</arg>
            <arg>--outputPath</arg><arg>${workingDir}/dataset</arg>
        </spark>
        <ok to="wait2"/>
        <error to="Kill"/>
    </action>
    <action name="join_propagate_otherresearchproduct">
        <spark xmlns="uri:oozie:spark-action:0.2">
            <master>yarn</master>
            <mode>cluster</mode>
            <name>ORCIDpropagationFromSemRel</name>
            <class>eu.dnetlib.dhp.orcidtoresultfromsemrel.SparkOrcidToResultFromSemRelJob3</class>
            <jar>dhp-propagation-${projectVersion}.jar</jar>
            <spark-opts>
                --executor-cores=${sparkExecutorCores}
                --executor-memory=${sparkExecutorMemory}
                --driver-memory=${sparkDriverMemory}
                --conf spark.extraListeners=${spark2ExtraListeners}
                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
                --conf spark.dynamicAllocation.enabled=true
                --conf spark.dynamicAllocation.maxExecutors=${spark2MaxExecutors}
            </spark-opts>
            <arg>--sourcePath</arg><arg>${workingDir}/preparedInfo/mergedOrcidAssoc</arg>
            <arg>--hive_metastore_uris</arg><arg>${hive_metastore_uris}</arg>
            <arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.OtherResearchProduct</arg>
            <arg>--outputPath</arg><arg>${workingDir}/otherresearchproduct</arg>
        </spark>
        <ok to="wait2"/>
        <error to="Kill"/>
    </action>
    <action name="join_propagate_software">
        <spark xmlns="uri:oozie:spark-action:0.2">
            <master>yarn</master>
            <mode>cluster</mode>
            <name>ORCIDpropagationFromSemRel</name>
            <class>eu.dnetlib.dhp.orcidtoresultfromsemrel.SparkOrcidToResultFromSemRelJob3</class>
            <jar>dhp-propagation-${projectVersion}.jar</jar>
            <spark-opts>
                --executor-cores=${sparkExecutorCores}
                --executor-memory=${sparkExecutorMemory}
                --driver-memory=${sparkDriverMemory}
                --conf spark.extraListeners=${spark2ExtraListeners}
                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
                --conf spark.dynamicAllocation.enabled=true
                --conf spark.dynamicAllocation.maxExecutors=${spark2MaxExecutors}
            </spark-opts>
            <arg>--sourcePath</arg><arg>${workingDir}/preparedInfo/mergedOrcidAssoc</arg>
            <arg>--hive_metastore_uris</arg><arg>${hive_metastore_uris}</arg>
            <arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.Software</arg>
            <arg>--outputPath</arg><arg>${workingDir}/software</arg>
        </spark>
        <ok to="wait2"/>
        <error to="Kill"/>
    </action>
    <join name="wait2" to="End"/>
<end name="End"/>
</workflow-app>