117 lines
3.3 KiB
Java
117 lines
3.3 KiB
Java
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package eu.dnetlib.dhp.oa.graph.dump.eosc;
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import java.io.IOException;
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import java.nio.file.Files;
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import java.nio.file.Path;
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import java.util.HashMap;
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import java.util.Optional;
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import org.apache.commons.io.FileUtils;
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import org.apache.spark.SparkConf;
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import org.apache.spark.api.java.JavaRDD;
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import org.apache.spark.api.java.JavaSparkContext;
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import org.apache.spark.sql.SparkSession;
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import org.junit.jupiter.api.AfterAll;
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import org.junit.jupiter.api.Assertions;
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import org.junit.jupiter.api.BeforeAll;
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import org.junit.jupiter.api.Test;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import eu.dnetlib.dhp.eosc.model.Organization;
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import eu.dnetlib.dhp.eosc.model.Result;
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/**
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* @author miriam.baglioni
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* @Date 25/10/23
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*/
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public class ExtendAffiliationTest {
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private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
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private static SparkSession spark;
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private static Path workingDir;
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private static final Logger log = LoggerFactory
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.getLogger(ExtendAffiliationTest.class);
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private static HashMap<String, String> map = new HashMap<>();
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@BeforeAll
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public static void beforeAll() throws IOException {
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workingDir = Files
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.createTempDirectory(ExtendAffiliationTest.class.getSimpleName());
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log.info("using work dir {}", workingDir);
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SparkConf conf = new SparkConf();
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conf.setAppName(ExtendAffiliationTest.class.getSimpleName());
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conf.setMaster("local[*]");
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conf.set("spark.driver.host", "localhost");
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conf.set("hive.metastore.local", "true");
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conf.set("spark.ui.enabled", "false");
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conf.set("spark.sql.warehouse.dir", workingDir.toString());
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conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString());
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spark = SparkSession
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.builder()
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.appName(ExtendAffiliationTest.class.getSimpleName())
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.config(conf)
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.getOrCreate();
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}
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@AfterAll
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public static void afterAll() throws IOException {
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FileUtils.deleteDirectory(workingDir.toFile());
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spark.stop();
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}
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@Test
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public void selectEoscResults() throws Exception {
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final String sourcePath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/eosc/input")
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.getPath();
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final String workingPath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/eosc/working/")
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.getPath();
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final String mdp = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/eosc/working/masterduplicate")
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.getPath();
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ExtendEoscResultWithOrganizationStep2.main(new String[] {
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"-isSparkSessionManaged", Boolean.FALSE.toString(),
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"-outputPath", workingDir.toString() + "/",
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"-sourcePath", sourcePath,
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"-resultType", "publication",
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"-workingPath", workingPath
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});
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<Organization> tmp = sc
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.textFile(workingDir.toString() + "/organization")
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.map(item -> OBJECT_MAPPER.readValue(item, Organization.class));
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System.out.println(tmp.count());
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// Assertions.assertEquals(3, tmp.count());
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//
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// Assertions
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// .assertEquals(
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// 0,
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// tmp
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// .filter(r -> Optional.ofNullable(r.getAffiliation()).isPresent() && r.getAffiliation().size() > 0)
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// .count());
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//
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// tmp.foreach(r -> System.out.println(new ObjectMapper().writeValueAsString(r)));
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}
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}
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