package eu.dnetlib.dhp.oa.graph.dump.eosc; import java.io.IOException; import java.nio.file.Files; import java.nio.file.Path; import java.util.HashMap; import java.util.Optional; import org.apache.commons.io.FileUtils; import org.apache.spark.SparkConf; import org.apache.spark.api.java.JavaRDD; import org.apache.spark.api.java.JavaSparkContext; import org.apache.spark.sql.SparkSession; import org.junit.jupiter.api.AfterAll; import org.junit.jupiter.api.Assertions; import org.junit.jupiter.api.BeforeAll; import org.junit.jupiter.api.Test; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import com.fasterxml.jackson.databind.ObjectMapper; import eu.dnetlib.dhp.eosc.model.Organization; import eu.dnetlib.dhp.eosc.model.Result; /** * @author miriam.baglioni * @Date 25/10/23 */ public class ExtendAffiliationTest { private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper(); private static SparkSession spark; private static Path workingDir; private static final Logger log = LoggerFactory .getLogger(ExtendAffiliationTest.class); private static HashMap map = new HashMap<>(); @BeforeAll public static void beforeAll() throws IOException { workingDir = Files .createTempDirectory(ExtendAffiliationTest.class.getSimpleName()); log.info("using work dir {}", workingDir); SparkConf conf = new SparkConf(); conf.setAppName(ExtendAffiliationTest.class.getSimpleName()); conf.setMaster("local[*]"); conf.set("spark.driver.host", "localhost"); conf.set("hive.metastore.local", "true"); conf.set("spark.ui.enabled", "false"); conf.set("spark.sql.warehouse.dir", workingDir.toString()); conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString()); spark = SparkSession .builder() .appName(ExtendAffiliationTest.class.getSimpleName()) .config(conf) .getOrCreate(); } @AfterAll public static void afterAll() throws IOException { FileUtils.deleteDirectory(workingDir.toFile()); spark.stop(); } @Test public void selectEoscResults() throws Exception { final String sourcePath = getClass() .getResource("/eu/dnetlib/dhp/oa/graph/dump/eosc/input") .getPath(); final String workingPath = getClass() .getResource("/eu/dnetlib/dhp/oa/graph/dump/eosc/working/") .getPath(); final String mdp = getClass() .getResource("/eu/dnetlib/dhp/oa/graph/dump/eosc/working/masterduplicate") .getPath(); ExtendEoscResultWithOrganizationStep2.main(new String[] { "-isSparkSessionManaged", Boolean.FALSE.toString(), "-outputPath", workingDir.toString() + "/", "-sourcePath", sourcePath, "-resultType", "publication", "-workingPath", workingPath }); final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext()); JavaRDD tmp = sc .textFile(workingDir.toString() + "/organization") .map(item -> OBJECT_MAPPER.readValue(item, Organization.class)); System.out.println(tmp.count()); // Assertions.assertEquals(3, tmp.count()); // // Assertions // .assertEquals( // 0, // tmp // .filter(r -> Optional.ofNullable(r.getAffiliation()).isPresent() && r.getAffiliation().size() > 0) // .count()); // // tmp.foreach(r -> System.out.println(new ObjectMapper().writeValueAsString(r))); } }