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[DUMP] fix some inconsistencies

This commit is contained in:
Miriam Baglioni 2024-07-19 16:22:28 +02:00
parent 9e539d38f7
commit 30d3ae6b69
7 changed files with 38 additions and 70 deletions
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4
dump/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java
View File

@ -432,8 +432,8 @@ public class ResultMapper implements Serializable {
if (journal.isPresent()) { if (journal.isPresent()) {
Journal j = journal.get(); Journal j = journal.get();
Container c = new Container(); Container c = new Container();
c.setConferencedate(j.getConferencedate()); c.setConferenceDate(j.getConferencedate());
c.setConferenceplace(j.getConferenceplace()); c.setConferencePlace(j.getConferenceplace());
c.setEdition(j.getEdition()); c.setEdition(j.getEdition());
c.setEp(j.getEp()); c.setEp(j.getEp());
c.setIss(j.getIss()); c.setIss(j.getIss());

33
dump/src/main/java/eu/dnetlib/dhp/oa/graph/dump/Utils.java
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@ -152,15 +152,6 @@ public class Utils {
} }
/** /**
* "measures":[{"id":"influence",
* "unit":[{"key":"score","value":"3.1177596E-9"},{"key":"class","value":"C5"}]},
* {"id":"popularity",
* "unit":[{"key":"score","value":"1.6041533E-9"},{
* "key":"class","value":"C5"}]},
* {"id":"influence_alt",
*{"key":"score","value":"0"},{"key":"class","value":"C5"}]},
* {"id":"popularity_alt","unit":[{"key":"score","value":"0.0"},{,"key":"class","value":"C5"}]},{"id":"impulse",
* {key":"score","value":"0"},,"key":"class","value":"C5"}]}]
* @param measures * @param measures
* @return * @return
*/ */
@ -169,10 +160,10 @@ public class Utils {
for (eu.dnetlib.dhp.schema.oaf.Measure m : measures) { for (eu.dnetlib.dhp.schema.oaf.Measure m : measures) {
switch (m.getId()) { switch (m.getId()) {
case USAGE_COUNT_DOWNLOADS: case USAGE_COUNT_DOWNLOADS:
getUsageCounts(i).setDownloads(m.getUnit().get(0).getValue()); getUsageCounts(i).setDownloads(Integer.parseInt(m.getUnit().get(0).getValue()));
break; break;
case USAGE_COUNT_VIEWS: case USAGE_COUNT_VIEWS:
getUsageCounts(i).setViews(m.getUnit().get(0).getValue()); getUsageCounts(i).setViews(Integer.parseInt(m.getUnit().get(0).getValue()));
break; break;
case BIP_INFLUENCE: case BIP_INFLUENCE:
m.getUnit().forEach(u -> { m.getUnit().forEach(u -> {
@ -192,10 +183,10 @@ public class Utils {
break; break;
case BIP_INFLUENCE_ALT: case BIP_INFLUENCE_ALT:
m.getUnit().forEach(u -> { m.getUnit().forEach(u -> {
if (u.getKey().equals("class")) if (u.getKey().equals("class"))
getImpactMeasure(i).setCitationClass(u.getValue()); getImpactMeasure(i).setCitationClass(u.getValue());
if (u.getKey().equals("score")) if (u.getKey().equals("score"))
getImpactMeasure(i).setCitationCount(Integer.parseInt(u.getValue())); getImpactMeasure(i).setCitationCount(Double.parseDouble(u.getValue()));
}); });
break; break;
case BIP_POPULARITY_ALT: case BIP_POPULARITY_ALT:
@ -233,16 +224,4 @@ public class Utils {
return i.getCitationImpact(); return i.getCitationImpact();
} }
private static Score getScore(String indicator, List<KeyValue> unit) {
Score s = new Score();
s.setIndicator(indicator);
for (KeyValue u : unit) {
if (u.getKey().equals("score")) {
s.setScore(u.getValue());
} else {
s.setClazz(u.getValue());
}
}
return s;
}
} }

2
dump/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/Extractor.java
View File

@ -164,6 +164,8 @@ public class Extractor implements Serializable {
.newInstance( .newInstance(
eu.dnetlib.dhp.oa.graph.dump.Constants.HARVESTED, eu.dnetlib.dhp.oa.graph.dump.Constants.HARVESTED,
eu.dnetlib.dhp.oa.graph.dump.Constants.DEFAULT_TRUST)); eu.dnetlib.dhp.oa.graph.dump.Constants.DEFAULT_TRUST));
if (cf.getKey().equals("10|openaire____:8ac8380272269217cb09a928c8caa993"))
cf.setKey("10|openaire____::8ac8380272269217cb09a928c8caa993");
Relation r = getRelation( Relation r = getRelation(
getEntityId(value.getId(), ENTITY_ID_SEPARATOR), getEntityId(value.getId(), ENTITY_ID_SEPARATOR),
getEntityId(cf.getKey(), ENTITY_ID_SEPARATOR), Constants.RESULT_ENTITY, Constants.DATASOURCE_ENTITY, getEntityId(cf.getKey(), ENTITY_ID_SEPARATOR), Constants.RESULT_ENTITY, Constants.DATASOURCE_ENTITY,

43
dump/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkDumpEntitiesJob.java
View File

@ -239,7 +239,7 @@ public class SparkDumpEntitiesJob implements Serializable {
.ofNullable(d.getDatasourcetype()) .ofNullable(d.getDatasourcetype())
.ifPresent( .ifPresent(
dsType -> datasource dsType -> datasource
.setDatasourceType(DatasourceSchemeValue.newInstance(dsType.getClassid(), dsType.getClassname()))); .setType(DatasourceSchemeValue.newInstance(dsType.getClassid(), dsType.getClassname())));
Optional Optional
.ofNullable(d.getOpenairecompatibility()) .ofNullable(d.getOpenairecompatibility())
@ -247,23 +247,23 @@ public class SparkDumpEntitiesJob implements Serializable {
Optional Optional
.ofNullable(d.getOfficialname()) .ofNullable(d.getOfficialname())
.ifPresent(oname -> datasource.setOfficialname(oname.getValue())); .ifPresent(oname -> datasource.setOfficialName(oname.getValue()));
Optional Optional
.ofNullable(d.getEnglishname()) .ofNullable(d.getEnglishname())
.ifPresent(ename -> datasource.setEnglishname(ename.getValue())); .ifPresent(ename -> datasource.setEnglishName(ename.getValue()));
Optional Optional
.ofNullable(d.getWebsiteurl()) .ofNullable(d.getWebsiteurl())
.ifPresent(wsite -> datasource.setWebsiteurl(wsite.getValue())); .ifPresent(wsite -> datasource.setWebsiteUrl(wsite.getValue()));
Optional Optional
.ofNullable(d.getLogourl()) .ofNullable(d.getLogourl())
.ifPresent(lurl -> datasource.setLogourl(lurl.getValue())); .ifPresent(lurl -> datasource.setLogoUrl(lurl.getValue()));
Optional Optional
.ofNullable(d.getDateofvalidation()) .ofNullable(d.getDateofvalidation())
.ifPresent(dval -> datasource.setDateofvalidation(dval.getValue())); .ifPresent(dval -> datasource.setDateOfValidation(dval.getValue()));
Optional Optional
.ofNullable(d.getDescription()) .ofNullable(d.getDescription())
@ -288,35 +288,35 @@ public class SparkDumpEntitiesJob implements Serializable {
.ofNullable(d.getOdcontenttypes()) .ofNullable(d.getOdcontenttypes())
.ifPresent( .ifPresent(
ctypes -> datasource ctypes -> datasource
.setContenttypes(ctypes.stream().map(ctype -> ctype.getValue()).collect(Collectors.toList()))); .setContentTypes(ctypes.stream().map(ctype -> ctype.getValue()).collect(Collectors.toList())));
Optional Optional
.ofNullable(d.getReleasestartdate()) .ofNullable(d.getReleasestartdate())
.ifPresent(rd -> datasource.setReleasestartdate(rd.getValue())); .ifPresent(rd -> datasource.setReleaseStartDate(rd.getValue()));
Optional Optional
.ofNullable(d.getReleaseenddate()) .ofNullable(d.getReleaseenddate())
.ifPresent(ed -> datasource.setReleaseenddate(ed.getValue())); .ifPresent(ed -> datasource.setReleaseEndDate(ed.getValue()));
Optional Optional
.ofNullable(d.getMissionstatementurl()) .ofNullable(d.getMissionstatementurl())
.ifPresent(ms -> datasource.setMissionstatementurl(ms.getValue())); .ifPresent(ms -> datasource.setMissionStatementUrl(ms.getValue()));
Optional Optional
.ofNullable(d.getDatabaseaccesstype()) .ofNullable(d.getDatabaseaccesstype())
.ifPresent(ar -> datasource.setAccessrights(ar.getValue())); .ifPresent(ar -> datasource.setAccessRights(ar.getValue()));
Optional Optional
.ofNullable(d.getDatauploadtype()) .ofNullable(d.getDatauploadtype())
.ifPresent(dut -> datasource.setUploadrights(dut.getValue())); .ifPresent(dut -> datasource.setUploadRights(dut.getValue()));
Optional Optional
.ofNullable(d.getDatabaseaccessrestriction()) .ofNullable(d.getDatabaseaccessrestriction())
.ifPresent(dar -> datasource.setDatabaseaccessrestriction(dar.getValue())); .ifPresent(dar -> datasource.setDatabaseAccessRestriction(dar.getValue()));
Optional Optional
.ofNullable(d.getDatauploadrestriction()) .ofNullable(d.getDatauploadrestriction())
.ifPresent(dur -> datasource.setDatauploadrestriction(dur.getValue())); .ifPresent(dur -> datasource.setDataUploadRestriction(dur.getValue()));
Optional Optional
.ofNullable(d.getVersioning()) .ofNullable(d.getVersioning())
@ -324,11 +324,11 @@ public class SparkDumpEntitiesJob implements Serializable {
Optional Optional
.ofNullable(d.getCitationguidelineurl()) .ofNullable(d.getCitationguidelineurl())
.ifPresent(cu -> datasource.setCitationguidelineurl(cu.getValue())); .ifPresent(cu -> datasource.setCitationGuidelineUrl(cu.getValue()));
Optional Optional
.ofNullable(d.getPidsystems()) .ofNullable(d.getPidsystems())
.ifPresent(ps -> datasource.setPidsystems(ps.getValue())); .ifPresent(ps -> datasource.setPidSystems(ps.getValue()));
Optional Optional
.ofNullable(d.getCertificates()) .ofNullable(d.getCertificates())
@ -342,10 +342,6 @@ public class SparkDumpEntitiesJob implements Serializable {
.ofNullable(d.getJournal()) .ofNullable(d.getJournal())
.ifPresent(j -> datasource.setJournal(getContainer(j))); .ifPresent(j -> datasource.setJournal(getContainer(j)));
// Optional
// .ofNullable(d.getMeasures())
// .ifPresent(m -> datasource.setIndicators(Utils.getIndicator(d.getMeasures())));
return datasource; return datasource;
} }
@ -391,11 +387,11 @@ public class SparkDumpEntitiesJob implements Serializable {
Optional Optional
.ofNullable(j.getConferencedate()) .ofNullable(j.getConferencedate())
.ifPresent(cdate -> c.setConferencedate(cdate)); .ifPresent(cdate -> c.setConferenceDate(cdate));
Optional Optional
.ofNullable(j.getConferenceplace()) .ofNullable(j.getConferenceplace())
.ifPresent(cplace -> c.setConferenceplace(cplace)); .ifPresent(cplace -> c.setConferencePlace(cplace));
return c; return c;
} }
@ -514,9 +510,6 @@ public class SparkDumpEntitiesJob implements Serializable {
} }
project.setFunding(funList); project.setFunding(funList);
// if (Optional.ofNullable(p.getMeasures()).isPresent()) {
// project.setIndicators(Utils.getIndicator(p.getMeasures()));
// }
return project; return project;
} }

21
dump/src/test/java/eu/dnetlib/dhp/oa/graph/dump/DumpJobTest.java
View File

@ -376,27 +376,20 @@ public class DumpJobTest {
.assertTrue(Integer.valueOf(gr.getIndicators().getUsageCounts().getViews()) >= 0); .assertTrue(Integer.valueOf(gr.getIndicators().getUsageCounts().getViews()) >= 0);
BipIndicators bip = gr.getIndicators().getCitationImpact(); BipIndicators bip = gr.getIndicators().getCitationImpact();
Assertions.assertEquals("6.01504990349e-09", bip.getInfluence()); Assertions.assertEquals(6.01504990349E-9, bip.getInfluence());
Assertions.assertEquals("C", bip.getInfluenceClass()); Assertions.assertEquals("C", bip.getInfluenceClass());
//
// case "popularity_alt":
// Assertions.assertEquals("2.304", in.getScore());
// Assertions.assertEquals("C", in.getClazz());
// break;
Assertions.assertEquals("1.81666032463e-08", bip.getPopularity()); Assertions.assertEquals(1.81666032463E-8, bip.getPopularity());
Assertions.assertEquals("C", bip.getPopularityClass()); Assertions.assertEquals("C", bip.getPopularityClass());
// case "influence_alt": Assertions.assertEquals(8.0, bip.getCitationCount());
// Assertions.assertEquals("8.0", in.getScore()); Assertions.assertEquals("C", bip.getCitationClass());
// Assertions.assertEquals("C", in.getClazz());
// break;
Assertions.assertEquals("8.0", bip.getImpulse()); Assertions.assertEquals(8.0, bip.getImpulse());
Assertions.assertEquals("C", bip.getImpulseClass()); Assertions.assertEquals("C", bip.getImpulseClass());
Assertions.assertEquals("0", gr.getIndicators().getUsageCounts().getDownloads()); Assertions.assertEquals(0, gr.getIndicators().getUsageCounts().getDownloads());
Assertions.assertEquals("1", gr.getIndicators().getUsageCounts().getViews()); Assertions.assertEquals(1, gr.getIndicators().getUsageCounts().getViews());
Assertions.assertEquals(1, gr.getInstance().size()); Assertions.assertEquals(1, gr.getInstance().size());

3
dump/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/complete/organization/organization.json
View File

@ -31,4 +31,5 @@
{"alternativeNames":[],"collectedfrom":[{"key":"10|openaire____::a55eb91348674d853191f4f4fd73d078","value":"CORDA - COmmon Research DAta Warehouse - Horizon 2020"}],"country":{"classid":"ES","classname":"Spain","schemeid":"dnet:countries","schemename":"dnet:countries"},"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.810000002384185791"},"dateofcollection":"2020-05-16","dateoftransformation":"2020-06-20","ecenterprise":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.810000002384185791"},"value":"false"},"echighereducation":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.810000002384185791"},"value":"false"},"ecinternationalorganization":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.810000002384185791"},"value":"false"},"ecinternationalorganizationeurinterests":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.810000002384185791"},"value":"false"},"eclegalbody":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.810000002384185791"},"value":"false"},"eclegalperson":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.810000002384185791"},"value":"true"},"ecnonprofit":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.810000002384185791"},"value":"false"},"ecnutscode":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.810000002384185791"},"value":"false"},"ecresearchorganization":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.810000002384185791"},"value":"false"},"ecsmevalidated":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.810000002384185791"},"value":"false"},"extraInfo":[],"id":"20|corda__h2020::94ca0fe4f08bd80fce004ec642cbad58","lastupdatetimestamp":1594398578323,"legalname":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.810000002384185791"},"value":"INDUKERN,S.A."},"originalId":["corda__h2020::907568376"],"pid":[],"websiteurl":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.810000002384185791"},"value":"http://www.indukern.es"}} {"alternativeNames":[],"collectedfrom":[{"key":"10|openaire____::a55eb91348674d853191f4f4fd73d078","value":"CORDA - 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