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107 lines
3.3 KiB
Java
107 lines
3.3 KiB
Java
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package eu.dnetlib.dhp.oa.graph.clean;
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import static org.junit.jupiter.api.Assertions.*;
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import static org.mockito.Mockito.lenient;
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import java.io.IOException;
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import java.util.List;
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import java.util.Set;
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import java.util.stream.Stream;
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import org.apache.commons.io.IOUtils;
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import org.junit.jupiter.api.BeforeEach;
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import org.junit.jupiter.api.Test;
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import org.junit.jupiter.api.extension.ExtendWith;
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import org.mockito.Mock;
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import org.mockito.junit.jupiter.MockitoExtension;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import eu.dnetlib.dhp.oa.graph.raw.common.VocabularyGroup;
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import eu.dnetlib.dhp.schema.oaf.Publication;
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import eu.dnetlib.dhp.schema.oaf.Qualifier;
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import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
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import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
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@ExtendWith(MockitoExtension.class)
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public class CleaningFunctionTest {
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public static final ObjectMapper MAPPER = new ObjectMapper();
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@Mock
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private ISLookUpService isLookUpService;
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private VocabularyGroup vocabularies;
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private CleaningRuleMap mapping;
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@BeforeEach
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public void setUp() throws ISLookUpException, IOException {
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lenient().when(isLookUpService.quickSearchProfile(VocabularyGroup.VOCABULARIES_XQUERY)).thenReturn(vocs());
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lenient()
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.when(isLookUpService.quickSearchProfile(VocabularyGroup.VOCABULARY_SYNONYMS_XQUERY))
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.thenReturn(synonyms());
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vocabularies = VocabularyGroup.loadVocsFromIS(isLookUpService);
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mapping = CleaningRuleMap.create(vocabularies);
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}
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@Test
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public void testCleaning() throws Exception {
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assertNotNull(vocabularies);
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assertNotNull(mapping);
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String json = IOUtils.toString(getClass().getResourceAsStream("/eu/dnetlib/dhp/oa/graph/clean/result.json"));
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Publication p_in = MAPPER.readValue(json, Publication.class);
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Publication p_out = OafCleaner.apply(p_in, mapping);
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assertNotNull(p_out);
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assertEquals("eng", p_out.getLanguage().getClassid());
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assertEquals("English", p_out.getLanguage().getClassname());
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assertEquals("0018", p_out.getInstance().get(0).getInstancetype().getClassid());
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assertEquals("Annotation", p_out.getInstance().get(0).getInstancetype().getClassname());
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assertEquals("CLOSED", p_out.getInstance().get(0).getAccessright().getClassid());
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assertEquals("Closed Access", p_out.getInstance().get(0).getAccessright().getClassname());
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Set<String> pidTerms = vocabularies.getTerms("dnet:pid_types");
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assertTrue(
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p_out
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.getPid()
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.stream()
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.map(p -> p.getQualifier())
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.allMatch(q -> pidTerms.contains(q.getClassid())));
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// TODO add more assertions to verity the cleaned values
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System.out.println(MAPPER.writeValueAsString(p_out));
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/*
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* assertTrue( p_out .getPid() .stream() .allMatch(sp -> StringUtils.isNotBlank(sp.getValue())));
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*/
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}
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private Stream<Qualifier> getAuthorPidTypes(Publication pub) {
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return pub
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.getAuthor()
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.stream()
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.map(a -> a.getPid())
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.flatMap(p -> p.stream())
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.map(s -> s.getQualifier());
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}
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private List<String> vocs() throws IOException {
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return IOUtils
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.readLines(CleaningFunctionTest.class.getResourceAsStream("/eu/dnetlib/dhp/oa/graph/clean/terms.txt"));
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}
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private List<String> synonyms() throws IOException {
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return IOUtils
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.readLines(CleaningFunctionTest.class.getResourceAsStream("/eu/dnetlib/dhp/oa/graph/clean/synonyms.txt"));
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}
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}
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