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3893 Commits

Author SHA1 Message Date
dimitrispie 76901a25f9 Updates Promotion DBs 
- Add a step for promoting the splitted monitor DBs
 2023-07-12 22:49:08 +03:00
Serafeim Chatzopoulos 4eba14a80e Add oozie workflow 2023-07-06 21:07:50 +03:00
Serafeim Chatzopoulos c2998a14e8 Add basic tests for affiliation relations 2023-07-06 20:28:16 +03:00
Serafeim Chatzopoulos bc7b00bcd1 Add bi-directional affiliation relations 2023-07-06 18:29:15 +03:00
Serafeim Chatzopoulos 12528ed2ef Refactor PrepareAffiliationRelations.java to use OafMapperUtils common functions 2023-07-06 18:08:33 +03:00
Serafeim Chatzopoulos bbc245696e Prepare actionsets for BIP affiliations 2023-07-06 15:56:12 +03:00
Ilias Kanellos 0c433eccdd Fix scores & Workflow 2023-07-06 15:06:28 +03:00
Ilias Kanellos d5c39a1059 Fix map scores to doi 2023-07-06 15:04:48 +03:00
Ilias Kanellos 772d5f0aab Make PR and AttRank serial 2023-07-06 13:47:51 +03:00
Giambattista Bloisi 801da2fd4a New sources formatted by maven plugin 2023-07-06 10:28:53 +02:00
Giambattista Bloisi bd3fcf869a rename dnet-pace-core into dhp-pace-core module and use it as dependency in other modules 2023-07-06 10:02:23 +02:00
Serafeim Chatzopoulos 347a889b20 Read affiliation relations 2023-07-06 00:51:01 +03:00
Miriam Baglioni 7738372125 [UsageCount] fixed typo in attribute name for datasource table 2023-06-30 18:56:41 +02:00
Sandro La Bruzzo 9963fd6d29 updated log to add subentity 2023-06-28 13:36:05 +02:00
Sandro La Bruzzo ed7e2ab6d1 reverted mistake on commit workflow.xml 2023-06-28 11:40:19 +02:00
Sandro La Bruzzo 9910ce06ae added to CreateSimRel the feature to write time log 2023-06-28 11:38:16 +02:00
Miriam Baglioni 2717edafb7 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2023-06-28 11:25:14 +02:00
Miriam Baglioni 2f04c9d149 [BulkTagging] fixing left over for test 2023-06-28 11:24:42 +02:00
Sandro La Bruzzo bd17c3edc8 added to CreateSimRel the feature to write time log 2023-06-28 11:20:58 +02:00
Serafeim Chatzopoulos 60f25b780d Minor fixes in workflow.xml and job.properties 2023-06-23 12:51:50 +03:00
Michele Artini 88a1cbc37d fixed a datasource id 2023-06-22 07:56:33 +02:00
Claudio Atzori b0ebf56367 Merge pull request 'Update step15_5.sql' (#314) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: D-Net/dnet-hadoop#314
 2023-06-21 10:33:22 +02:00
dimitrispie 2b6370eaee Update step15_5.sql 
Bug fix
 2023-06-21 11:31:10 +03:00
Claudio Atzori 35e42a86ed Merge pull request 'Update step15_5.sql' (#313) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: D-Net/dnet-hadoop#313
 2023-06-21 10:26:16 +02:00
dimitrispie 74cb060bfe Update step15_5.sql 
Add "if not exists" clause
 2023-06-21 11:24:06 +03:00
Claudio Atzori 85e016df17 Merge pull request 'Update step16-createIndicatorsTables.sql' (#312) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: D-Net/dnet-hadoop#312
 2023-06-21 09:52:33 +02:00
dimitrispie a475cfcb7b Update step16-createIndicatorsTables.sql 
Rename a field in indi_pub_interdisciplinarity
 2023-06-21 10:42:02 +03:00
Claudio Atzori 979cf9cd87 Merge pull request 'Update step15.sql' (#311) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: D-Net/dnet-hadoop#311
 2023-06-21 09:20:01 +02:00
dimitrispie 4648cd88d4 Update step15.sql 
Cast score to double
 2023-06-21 10:02:19 +03:00
dimitrispie 94d2573c77 Update step15.sql 
Bug Fix
 2023-06-21 09:22:39 +03:00
Claudio Atzori 0561362de2 Merge pull request 'Update step20-createMonitorDB_institutions.sql' (#309) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: D-Net/dnet-hadoop#309
 2023-06-20 15:07:09 +02:00
Claudio Atzori 50d7dc0078 [graph enrichment] fixed projectOrganizationPath not being passed to the apply_resulttoorganization_propagation node 2023-06-19 15:42:44 +02:00
Claudio Atzori fbd9bf704e indent 2023-06-19 15:41:22 +02:00
dimitrispie be2caedb04 Update step20-createMonitorDB_institutions.sql 
Add openorgs____::1624ff7c01bb641b91f4518539a0c28a Vrije Universiteit Amsterdam
 2023-06-19 12:12:17 +03:00
dimitrispie 36e0a8fec4 Changes to Promotion Stats WF 
1. Add new cluster host at impala-shell commands
2. Add a step for splitting monitor dbs
3. Update workflow.xml to included the new splitting monitor dbs step
 2023-06-19 09:44:34 +03:00
dimitrispie 4c770a5e29 Update finalizeImpalaCluster.sh 
Drop views in shadow dbs before dropping the db
 2023-06-15 13:25:37 +03:00
dimitrispie e06d962a6a Update step15.sql 2023-06-15 12:20:35 +03:00
dimitrispie afcad08396 Update step20-createMonitorDB_institutions.sql 
Added openorgs____::c0b262bd6eab819e4c994914f9c010e2   -- National Institute of Geophysics and Volcanology
 2023-06-15 10:28:49 +03:00
Claudio Atzori b9748763e2 Merge pull request '[stats wf] Bug fixes' (#308) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: D-Net/dnet-hadoop#308
 2023-06-14 21:57:03 +02:00
dimitrispie 42b8ce2ba4 Update copyDataToImpalaCluster.sh 2023-06-14 19:23:42 +03:00
dimitrispie 2032b0df40 Bug fixes 
1. Remove tables/views from old databases in the new cluster, before dropping the dbs
2. Fix id in result_accessroute, indi_impact_measures, indi_pub_bronze_oa
 2023-06-14 19:09:09 +03:00
Claudio Atzori b76a47b103 [aggregator graph] added column alias when mapping organization PIDs from the OpenOrgs database 2023-06-13 11:38:10 +02:00
Claudio Atzori ad04f14b81 Merge branch 'beta' into distinct_pids_from_openorgs_beta 2023-06-12 09:58:21 +02:00
Claudio Atzori 55f002f1e9 Merge branch 'beta' into propagationProjectThroughParentChils 2023-06-12 09:56:53 +02:00
Claudio Atzori 4b00a76271 Merge branch 'beta' into fulltext_url_validation 2023-06-12 09:55:25 +02:00
Claudio Atzori de225c71cd Merge branch 'beta' into removeTaggingCondition 2023-06-12 09:50:40 +02:00
Claudio Atzori e1409ffe80 update sql query to return distinct pids 2023-06-12 09:47:45 +02:00
Claudio Atzori da7b66c542 Merge pull request '[stats wf] Added memory to hive' (#305) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: D-Net/dnet-hadoop#305
 2023-06-08 08:58:48 +02:00
dimitrispie c5f42c7f5b Added memory to hive 2023-06-07 18:18:23 +03:00
Claudio Atzori afb76ebf0f Merge pull request '[stats wf] Bug fix on indicators step' (#304) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: D-Net/dnet-hadoop#304
 2023-06-07 16:49:09 +02:00
dimitrispie fa24e2e18f Bug fix on indicators step 
indi_pub_gold_oa table was missing during the creation of other indicators
 2023-06-07 17:43:37 +03:00
Claudio Atzori 01c67e697d Merge pull request '[ stats wf] Bug fix' (#303) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: D-Net/dnet-hadoop#303
 2023-06-07 14:41:44 +02:00
dimitrispie 28272c1b0e Bug fix 2023-06-07 15:34:01 +03:00
Alessia Bardi d5be6a13e9 Updated officialnmae of pangaea in hostedbymap for Datacite to avoid duplicate entries in the source filter of the portal 2023-06-06 14:43:32 +02:00
Claudio Atzori 8f651f1225 Merge pull request 'Changes to beta stats wf' (#300) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: D-Net/dnet-hadoop#300
 2023-06-06 11:41:36 +02:00
dimitrispie ad07fbf053 Add names to organizations for collaboration indicators 2023-06-02 14:13:10 +03:00
dimitrispie 2324670714 Split Monitor DBs-Interdisciplinarity indicators 
- Split DBs Monitor for faster rendering of visualizations
- Add interdisciplinarity indicators from result_fos
 2023-06-02 13:34:16 +03:00
Miriam Baglioni daf4d7971b refactoring 2023-05-31 18:56:58 +02:00
Miriam Baglioni 97d72d41c3 finalization of implementation and testing 2023-05-31 18:53:22 +02:00
Miriam Baglioni 0389b57ca7 added propagation for project to organization 2023-05-31 11:06:58 +02:00
Claudio Atzori e45777e7e1 [aggregator graph] added validation for URLs mapped from oaf:fulltext 2023-05-26 11:33:42 +02:00
dimitrispie ebe586b1d1 Impact indicators/Unpaywall 
- Added Impact indicators
- Added unpaywall open access colours
 2023-05-26 10:25:28 +03:00
dimitrispie d6102dd576 Update step16-createIndicatorsTables.sql 
- Add org names to indi_project_collab_org
- Add indi_pub_bronze_oa
 - Changes to indi_pub_hybrid_oa_with_cc
 2023-05-25 14:52:34 +03:00
Miriam Baglioni 9097e71853 Added assertion in test 2023-05-24 16:30:53 +02:00
Miriam Baglioni 9567c13bc3 refactoring 2023-05-24 16:20:05 +02:00
Miriam Baglioni 34172455d1 [BulkTag] Adding remove constraints to specify when a community must not appear in the context of a result. 2023-05-24 09:56:23 +02:00
Ilias Kanellos a1b9187039 Fix syntax error on workflow.xml 2023-05-23 17:17:12 +03:00
Ilias Kanellos 6a7e370a21 Remove unnecessary counts in graph creation 2023-05-23 16:48:58 +03:00
Ilias Kanellos ec4e010687 End after rankings | Create graph debugged 2023-05-23 16:44:04 +03:00
Claudio Atzori a235d2a24a Merge pull request 'Updates to steps related to transfer data to impala cluster' (#295) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: D-Net/dnet-hadoop#295
 2023-05-18 08:46:15 +02:00
dimitrispie 86f4f63daf Updates to steps related to transfer data to impala cluster 
1. Remove external table definitions in stats_ext
2. Fix the issue where some views are not created.
3. Added two workflow parameters for copying also the usage stats dbs
 2023-05-18 09:33:05 +03:00
Claudio Atzori 909729a2fc [dedup] tweaking num partitions, minor changes 2023-05-17 10:16:22 +02:00
Ilias Kanellos 38020e242a Merge branch '8172_impact_indicators_workflow' of https://code-repo.d4science.org/D-Net/dnet-hadoop into 8172_impact_indicators_workflow 2023-05-16 17:34:53 +03:00
Ilias Kanellos 3d69f33c84 Fix selection of columns in graph creation 2023-05-16 17:34:42 +03:00
Ilias Kanellos 3c38f7ba6f Fix selection of columns in graph creation 2023-05-16 17:32:53 +03:00
Serafeim Chatzopoulos 8ef718c363 Fix workflow application path 2023-05-16 16:28:48 +03:00
Serafeim Chatzopoulos 26328e2a0d Move job.properties 2023-05-16 14:39:53 +03:00
Serafeim Chatzopoulos 4eec3e7052 Add jobTracker, nameNode && spark2Lib as global params in oozie wf 2023-05-15 22:28:48 +03:00
Serafeim Chatzopoulos b83135c252 Add missing kill nodes in workflow.xml 2023-05-15 19:55:35 +03:00
Serafeim Chatzopoulos 45f2aa0867 Move end node ... at the end in workflow.xml 2023-05-15 17:52:20 +03:00
Claudio Atzori 8acad52a0c Merge branch 'beta' into apc_affiliation 2023-05-15 15:47:33 +02:00
Claudio Atzori 8a463cc3e8 fixed organization id created when mapping APC affiliations. Factored out ROR constants in dhp-common 2023-05-15 15:44:46 +02:00
Serafeim Chatzopoulos 12a57e1f58 Resolve conflicts 2023-05-15 16:20:11 +03:00
Serafeim Chatzopoulos 82e2a96f51 Resolve conflicts 2023-05-15 15:53:12 +03:00
Serafeim Chatzopoulos b8e8c959fe Update workflow.xml && job.properties 2023-05-15 15:50:23 +03:00
Ilias Kanellos 4a905932a3 Spark properties from job.properties 2023-05-15 15:24:22 +03:00
Claudio Atzori 0c314d5e09 Merge pull request 'Update copyDataToImpalaCluster.sh' (#293) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: D-Net/dnet-hadoop#293
 2023-05-15 12:05:54 +02:00
Serafeim Chatzopoulos 07818131ef Update documentation 2023-05-15 13:04:44 +03:00
dimitrispie b3f9633205 Update copyDataToImpalaCluster.sh 
Added option --user to impala-shell command
 2023-05-15 12:51:44 +03:00
Miriam Baglioni 78b07400c0 changed test classes 2023-05-15 11:37:08 +02:00
Miriam Baglioni 86fe886c1a removed the inverse of the Citing relation 2023-05-15 11:20:51 +02:00
Ilias Kanellos 1788ac2d4d Correct filtering for MAG records 2023-05-12 12:55:43 +03:00
Miriam Baglioni 12cd179d2d Merge pull request 'Update copyDataToImpalaCluster.sh' (#291) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: D-Net/dnet-hadoop#291
 2023-05-12 11:36:34 +02:00
dimitrispie 00d0d162b6 Update copyDataToImpalaCluster.sh 
Added a temporary folder to copy the files to avoid permission issues
 2023-05-12 12:31:13 +03:00
Ilias Kanellos 5ddbb4ad10 Spark properties no longer hardcoded 2023-05-11 15:36:47 +03:00
Ilias Kanellos 3de35fd6a3 Produce 5 classes of ranking scores 2023-05-11 14:42:25 +03:00
Miriam Baglioni 8c05f49665 moved the version as it was before the change 2023-05-09 10:48:34 +02:00
Miriam Baglioni 99ac5bab46 added check to avoid NPE when checking the organization country 2023-05-04 19:38:39 +02:00
Claudio Atzori 0704e186f6 Merge pull request 'Stats wf executed on hive only' (#283) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: D-Net/dnet-hadoop#283
 2023-05-02 14:05:12 +02:00
Claudio Atzori d8882c4481 extended mapping applied to datacite records to produce affiliations using the ROR ids. Inc ase of APCs it includes the amount and the currently in the relation 2023-05-02 11:56:51 +02:00