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337 Commits

Author SHA1 Message Date
Sandro La Bruzzo c73072079d fix conflicts 2021-03-22 16:36:31 +01:00
Claudio Atzori 61a2551e74 migrated last changes from svn (dnet45) 2021-03-15 17:17:55 +01:00
Claudio Atzori acbe3119a4 RestCollectorPlugin imported from dne45 2021-03-08 09:44:09 +01:00
Claudio Atzori fa7930d2e2 merging contributions from PR#97 2021-03-05 15:45:28 +01:00
Claudio Atzori 55f6ff5f55 README.md for aggregation workflows 2021-03-03 16:18:34 +01:00
Claudio Atzori 36f750cd1d removed unused classes 2021-03-03 10:22:29 +01:00
Claudio Atzori b73dce3e3a more logging on the MDStore mongodb client. Forcing UTF_8 encoding on the content 2021-03-03 10:17:16 +01:00
Claudio Atzori e76c4f62c1 MetadataRecord moved in dhp-schemas 2021-02-26 10:58:48 +01:00
Claudio Atzori 7df2461ccc indent XML records collected from oai-pmh endpoints 2021-02-25 16:19:12 +01:00
Claudio Atzori b830e33392 mdstore collector plugin 2021-02-25 12:30:30 +01:00
Claudio Atzori 271e88537b code formatting 2021-02-25 12:28:56 +01:00
Claudio Atzori 9c899f4433 cleanup on transformation functions and the relative tests 2021-02-24 15:07:59 +01:00
Claudio Atzori fc3fa5e343 implemented mdstore collector plugin 2021-02-24 15:07:24 +01:00
Claudio Atzori e7eba9f7e7 WIP: transformation workflow error reporting; cleanup 2021-02-17 16:54:08 +01:00
Claudio Atzori 58467aaf1e WIP: transformation workflow error reporting 2021-02-17 16:14:41 +01:00
Claudio Atzori cc88701f29 retry for any Socket exception 2021-02-17 16:13:54 +01:00
Claudio Atzori 545f8f3e48 using jackson objectmapper instead of GSon to serialise the aggregation report 2021-02-17 12:15:00 +01:00
Claudio Atzori b592d78bb4 WIP: collectorWorker error reporting, generalised reported implementation 2021-02-17 10:28:01 +01:00
Claudio Atzori cf27905a71 WIP: collectorWorker error reporting, added report messages 2021-02-16 16:53:14 +01:00
Claudio Atzori 1abe6d1ad7 WIP: collectorWorker error reporting, added report messages 2021-02-15 15:08:59 +01:00
Claudio Atzori 523a6bfa97 Merge pull request 'first commit to the correct branch' (#94) from andreas.czerniak/BrAggr_dnet-hadoop:hadoop_aggregator into hadoop_aggregator 
Looks good to me, thanks Andreas!
 2021-02-15 12:15:31 +01:00
Sandro La Bruzzo 7edcc87ed4 changed xslt behaviour on failure 2021-02-12 17:27:08 +01:00
Sandro La Bruzzo 6a37c7f175 merge fixed 2021-02-12 16:38:47 +01:00
Sandro La Bruzzo b3f5c2351d Merge branch 'hadoop_aggregator' of code-repo.d4science.org:D-Net/dnet-hadoop into hadoop_aggregator 
 Conflicts:
	dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/transformation/TransformationJobTest.java
 2021-02-12 16:37:14 +01:00
Sandro La Bruzzo f216277219 Implemented cleaning date 2021-02-12 16:34:52 +01:00
Andreas Czerniak 5a9017cf18 clone, min. changes, test, run 2021-02-12 14:32:36 +01:00
Claudio Atzori aa55dedb8a Merge branch 'hadoop_aggregator' of https://code-repo.d4science.org/D-Net/dnet-hadoop into hadoop_aggregator 2021-02-12 12:31:05 +01:00
Claudio Atzori 29c6f7e255 classes related to the collection workflow moved into common package; implemented MongoDB collection plugins 2021-02-12 12:31:02 +01:00
Sandro La Bruzzo 17e6f1934e fixed NPE on cleaner 2021-02-12 11:48:11 +01:00
Sandro La Bruzzo ebcc3ec14f updated wrong datacite identifier in trasformation 2021-02-11 16:25:51 +01:00
Claudio Atzori bae029f828 collection_java_xmx allows to declare the heap size allocated for the java actions involved in the metadata collectionw workflow 2021-02-08 18:07:23 +01:00
Claudio Atzori bebc54d5bf seq file storing native records is now compressed 2021-02-08 18:06:25 +01:00
Claudio Atzori 50add4c61b added requestDelay to HttpConnector2 configuration; Aggregation workflow constants moved in dhp-common 2021-02-08 12:19:38 +01:00
Claudio Atzori 40df0f987d better logging, WIP: collectorWorker error reporting; common functions moved in DHPUtils 2021-02-06 20:12:00 +01:00
Claudio Atzori a8a758925e better logging, WIP: collectorWorker error reporting 2021-02-05 19:18:05 +01:00
Claudio Atzori 730973679a Merge branch 'hadoop_aggregator' of https://code-repo.d4science.org/D-Net/dnet-hadoop into hadoop_aggregator 2021-02-04 17:25:00 +01:00
Claudio Atzori deb85706db imported HttpConnector from https://svn.driver.research-infrastructures.eu/driver/dnet45/modules/dnet-modular-collector-service/trunk/src/main/java/eu/dnetlib/data/collector/plugins/HttpConnector.java as HttpConnector2 2021-02-04 17:24:52 +01:00
Sandro La Bruzzo 4dae5e605d implemented messaging btween collection worker and Dnet 2021-02-04 15:51:15 +01:00
Claudio Atzori 72c57b28fa switched project version to 1.2.4-branch_hadoop_aggregator-SNAPSHOT 2021-02-04 14:08:18 +01:00
Claudio Atzori 40764cf626 better logging, WIP: collectorWorker error reporting 2021-02-04 14:06:02 +01:00
Sandro La Bruzzo 69c253710b fixed test 2021-02-04 10:30:49 +01:00
Claudio Atzori e04045089f better logging, WIP: collectorWorker error reporting 2021-02-03 17:58:22 +01:00
Claudio Atzori 0e8a4f9f1a better logging, WIP: collectorWorker error reporting 2021-02-03 12:33:41 +01:00
Claudio Atzori 53884d12c2 code formatting 2021-02-02 14:38:03 +01:00
Claudio Atzori ac46c247d2 code formatting 2021-02-02 14:24:00 +01:00
Claudio Atzori bde14b149a fixed transformation target paths 2021-02-02 12:49:29 +01:00
Claudio Atzori ca4391aa1c minor changes 2021-02-02 12:44:04 +01:00
Claudio Atzori bb89b99b24 code formatting 2021-02-02 12:34:14 +01:00
Claudio Atzori 75807ea5ae factored out constants 2021-02-02 12:28:21 +01:00
Sandro La Bruzzo 0634674add implemented transformation test 2021-02-02 12:12:14 +01:00
Claudio Atzori 8eaa1fd4b4 WIP: metadata collection in INCREMENTAL mode and relative test 2021-02-01 19:29:10 +01:00
Sandro La Bruzzo bead34d11a code refactor 2021-02-01 14:58:06 +01:00
Sandro La Bruzzo 6ff234d81b Implemented a first prototype of incremental harvesting and trasformation using readlock 2021-02-01 13:56:05 +01:00
Sandro La Bruzzo b6b835ef49 update transformation Factory to get Transformation Rule by Id and not by Title 2021-02-01 08:49:42 +01:00
Sandro La Bruzzo e423634cb6 RollBack in case of error WORKS!!! 2021-01-29 17:21:42 +01:00
Sandro La Bruzzo 8ee82576c6 Collection on Refresh WORKS!!! 2021-01-29 17:02:46 +01:00
Sandro La Bruzzo 0276180039 WIP mdstore 
transaction implemented on hadoop side
 2021-01-29 16:42:41 +01:00
Sandro La Bruzzo 0f8e2ecce6 Merged Datacite transfrom into this branch 2021-01-29 10:45:07 +01:00
Sandro La Bruzzo 99cf3a8ea4 Merged Datacite transfrom into this branch 2021-01-28 16:34:46 +01:00
Sandro La Bruzzo 98b9498b57 Removed old messaging system not quite used from collection and Transformation workflow 
code refactor
 2021-01-28 09:51:17 +01:00
Sandro La Bruzzo 184e7b3856 Implemented new Transformation using spark 2021-01-27 15:43:08 +01:00
Sandro La Bruzzo ffb092b8d3 removed duplicate code HttpConnector.java 2021-01-25 15:05:37 +01:00
Sandro La Bruzzo cda210a2ca changed documentation since it didn't reflect the current status 2021-01-25 14:17:42 +01:00
Claudio Atzori 41500669e2 [BIP! Scores integration] merged missing classes from bipFinder branch 2021-01-11 14:39:47 +01:00
Claudio Atzori 2a7a10809e [BIP! Scores integration] merged missing classes from bipFinder branch 2021-01-11 10:05:02 +01:00
Claudio Atzori d6686dd7cf merged from master 2021-01-08 18:16:12 +01:00
Claudio Atzori 34229970e6 [BIP! Scores integration] Create updates as Result rather than subclasses; Result considers also metrics in the mergeFrom operation 2021-01-08 16:29:17 +01:00
Claudio Atzori 1361c9eb0c [BIP! Scores integration] Create updates as Result rather than subclasses; Result considers also metrics in the mergeFrom operation 2021-01-07 10:07:30 +01:00
Claudio Atzori 2e503ee101 code formatting 2020-12-17 13:47:38 +01:00
Claudio Atzori 03319d3bd9 Revert "Merge pull request 'Creation of the action set to include the bipFinder! score' (#62) from miriam.baglioni/dnet-hadoop:bipFinder into master" 
This reverts commit add7e1693b, reversing
changes made to f9a8fd8bbd.
 2020-12-17 12:23:58 +01:00
Miriam Baglioni 888175baf7 added java doc 2020-12-01 18:36:29 +01:00
Miriam Baglioni 3d62d99d5d fixed issue in workflow variable 2020-12-01 15:02:49 +01:00
Miriam Baglioni 17680296b9 removed unnecessary variable and unused method 2020-12-01 15:02:31 +01:00
Miriam Baglioni 5b3ed70808 refactoring 2020-12-01 14:31:34 +01:00
Miriam Baglioni 62ff4999e3 added workflow and last step of collection and save 2020-12-01 14:30:56 +01:00
Miriam Baglioni 45d06c45c7 collecting all the atoic actions for result type and save them all in the AS path 2020-12-01 14:29:18 +01:00
Miriam Baglioni 0051ebede5 extending test 2020-12-01 12:43:03 +01:00
Miriam Baglioni 719da15f04 added test resources 2020-12-01 12:42:30 +01:00
Miriam Baglioni db36e11912 classes test classes and resources for production of the actionset to include bipFinder score in results 2020-11-30 20:14:23 +01:00
Sandro La Bruzzo 66efb39634 implemented merge scholix 2020-11-04 09:04:01 +01:00
Miriam Baglioni 4905739be6 changed resource file to mirror change in business logic 2020-10-30 17:02:57 +01:00
Miriam Baglioni b40360ebfb changed the code to mirror the changed decision in the classification level and prodramme description labels 2020-10-30 17:02:30 +01:00
Miriam Baglioni 696409fb9f disabled tests because needing remote resource 2020-10-30 17:01:48 +01:00
Miriam Baglioni a2ce527fae changed to match the requirements for short titles in level and long titles in classification 2020-10-20 17:03:25 +02:00
Claudio Atzori 5f7b75f5c5 code formatting 2020-10-07 13:22:54 +02:00
Miriam Baglioni 061527f06e adding short description 2020-10-05 13:54:39 +02:00
Miriam Baglioni 0c12d7bdd8 adding short description 2020-10-05 11:39:55 +02:00
Miriam Baglioni fc2f7636be removed not used code 2020-10-02 12:33:52 +02:00
Miriam Baglioni 4aec347351 refactoring 2020-10-01 16:23:52 +02:00
Miriam Baglioni 61946b4092 refactoring 2020-10-01 16:22:48 +02:00
Miriam Baglioni 7e6d35e56c added the link to the excel file related to topic 2020-10-01 15:53:31 +02:00
Miriam Baglioni 43cbd62c2b added classpath.first in the configuration 2020-10-01 15:46:34 +02:00
Miriam Baglioni cd69c6b023 added dependency for the topic file path 2020-10-01 15:45:59 +02:00
Miriam Baglioni 771cde3d05 moved the library version to global pom 2020-10-01 15:43:47 +02:00
Miriam Baglioni 632351c0da modified test resources to mirror the changed in the code 2020-10-01 15:43:02 +02:00
Miriam Baglioni ebc1c5513f modified test resources to mirror the changed in the code 2020-10-01 15:42:29 +02:00
Miriam Baglioni 3a374c34b6 fixed null pointer exception 2020-10-01 15:41:01 +02:00
Miriam Baglioni 83ea746163 added check to the test 2020-10-01 15:40:28 +02:00
Miriam Baglioni 6e5db85b32 - 2020-10-01 11:51:11 +02:00
Miriam Baglioni a46179f61c refactoring 2020-10-01 11:22:01 +02:00