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714 Commits

Author SHA1 Message Date
miconis 02320de371 minor changes 2020-03-24 17:43:51 +01:00
miconis 8e8b5e8f30 roots wf merged in scan wf 2020-03-24 17:40:58 +01:00
Miriam Baglioni 19d7f8b51d decommented execution for some of the result type for testing purposes 2020-03-24 16:49:46 +01:00
Miriam Baglioni ad24c8478f added missing parameter 2020-03-24 16:19:59 +01:00
Miriam Baglioni 46094a3eec bug fixing for implementation with dataset 2020-03-24 16:19:36 +01:00
Claudio Atzori 51ff68db66 Merge branch 'dedupTest' of https://code-repo.d4science.org/D-Net/dnet-hadoop into dedupTest 2020-03-24 11:18:19 +01:00
Claudio Atzori 1e869e7bed using method available from currently used library 2020-03-24 11:17:44 +01:00
miconis f0d72b76a8 package structure fixed 2020-03-24 10:51:40 +01:00
Claudio Atzori aaedbb1b8b WIP: dedup workflow, stage 2 2020-03-24 09:59:28 +01:00
Michele Artini e3760c7f39 fix a bug with organization countries 2020-03-24 08:43:56 +01:00
Claudio Atzori 8b0ba3d76a posprocessing script correctly run as hive2 action 2020-03-23 17:40:39 +01:00
miconis 93e2291291 minor changes 2020-03-23 17:17:56 +01:00
miconis f7890a90df implementation of the mechanism that checks the existance of a mergerel file 2020-03-23 17:13:30 +01:00
Miriam Baglioni ad712f2d79 added the needed variables in the config and read the variables in the workflow 2020-03-23 17:11:36 +01:00
Miriam Baglioni f1e9fe9752 changed implementation using dataset and query on hive 2020-03-23 17:11:00 +01:00
Miriam Baglioni f09cd1e911 removed unuseful variable in the configuration 2020-03-23 17:10:14 +01:00
Miriam Baglioni 9418e3d4fa read dataset from files instead of using hive tables 2020-03-23 17:09:27 +01:00
Miriam Baglioni a7bf037306 remove unused class 2020-03-23 14:36:43 +01:00
Miriam Baglioni 8ab8b6b0bf minor 2020-03-23 14:35:23 +01:00
Miriam Baglioni 30d58fd98c change the configuration of the workflow 2020-03-23 14:32:49 +01:00
Miriam Baglioni a440152b46 refactoring 2020-03-23 14:30:56 +01:00
Miriam Baglioni 47561f3597 changed the implementation from rdd to dataset got from sql queries (on hive) 2020-03-23 11:58:32 +01:00
miconis c20e179f5a structure of the workflows updated 2020-03-23 11:43:49 +01:00
Claudio Atzori 658d40ccbe WIP trying to use hive2 actions 2020-03-23 11:14:54 +01:00
Claudio Atzori ecb64e4998 Merge branch 'migration_wfs_regular_all_steps' 2020-03-23 08:57:01 +01:00
Michele Artini 15160032bd fixed a bug setting some organization fields 2020-03-23 08:39:14 +01:00
Claudio Atzori a4c52661a0 WIP: fixing dedup workflows 2020-03-20 19:17:24 +01:00
Claudio Atzori 6cb0a9bff0 dedup wf directory structure aligned with project commons 2020-03-20 16:48:14 +01:00
miconis e16e644faf implementation of the workflow for entity update and for relations update 2020-03-20 13:01:56 +01:00
przemek 638b78f96a Merge remote-tracking branch 'origin/master' into przemyslawjacewicz_actionmanager_impl_prototype 2020-03-19 15:12:56 +01:00
miconis 6d879e2ee1 integration of the new AtomicAction class 2020-03-19 15:10:42 +01:00
miconis 6e0fb8efa0 minor changes 2020-03-19 15:08:03 +01:00
miconis 4e82a24af2 minor changes and implementation of the create connected components action 2020-03-19 15:01:07 +01:00
Claudio Atzori 36236dd1c1 action migration workflow produces eu.dnetlib.dhp.schema.action.AtomicAction(s) 2020-03-19 14:00:38 +01:00
Claudio Atzori a0ab15a64c need to stick on using guava:11.0.2 as it is the version used by the hadoop components (oozie client for sure). The last version (28.2-jre) breaks the oozie workflow submission 2020-03-19 13:58:58 +01:00
Sandro La Bruzzo 0594b92a6d implemented relation with dataset 2020-03-19 11:11:07 +01:00
Claudio Atzori 1850a02ae4 added simpler, AtomicAction replacement, based on the dhp.Oaf model 2020-03-19 10:44:16 +01:00
miconis 679b5869e5 implementation of the lookup procedure to take dedup conf from the resource profiles 2020-03-18 17:41:56 +01:00
Claudio Atzori abe8fb69a2 added global properties, moved postprocessing script inside the oozie_app directory 2020-03-18 15:43:54 +01:00
miconis f32eae5ce9 implementation of the spark action for the simrel creation 2020-03-18 14:27:49 +01:00
Claudio Atzori c7e0730720 compress the output produced by migration steps 1 and 2 2020-03-18 09:34:57 +01:00
Claudio Atzori 2f11e37602 fixed expansion of path variables 2020-03-17 19:41:07 +01:00
Claudio Atzori 2795b0b096 no need to mkdir a the all_entities file 2020-03-17 17:22:14 +01:00
Claudio Atzori 19746ad308 when reuseContent, reset ${workingPath}/all_entities 2020-03-17 17:17:06 +01:00
Claudio Atzori 2f0c85eeb3 updated parameters for regular_all_steps worfklow, introduced flag 'reuseContent' 2020-03-17 17:04:58 +01:00
Miriam Baglioni 67ea3cf3ed changed the way to read the file with info on resource or relation. From sequenceFile to textFile 2020-03-17 16:32:05 +01:00
Miriam Baglioni b4652d018c moved the creation of new dir to common class. 2020-03-17 16:31:24 +01:00
Claudio Atzori b8290b5851 updated parameters for regular_all_steps worfklow 2020-03-17 15:45:30 +01:00
Claudio Atzori 4706f24ec5 updated parameters for regular_all_steps worfklow 2020-03-17 15:23:54 +01:00
Claudio Atzori aeb01fa353 reading from newline delimited json textfiles instead of sequence files 2020-03-17 11:57:24 +01:00
Miriam Baglioni 92f4e0001d Merge branch 'bulktag' 2020-03-16 13:33:27 +01:00
Miriam Baglioni ab08a37024 Merge remote-tracking branch 'upstream/master' 2020-03-16 12:45:23 +01:00
Claudio Atzori af835f2f98 when migrating actionsets from DM cluster, populate the AtomicAction.targetValue when empty (dedup similarities) 2020-03-15 18:07:59 +01:00
Claudio Atzori 9c84e21b87 added workflow to migrate latest version of each actionset content from DM to OCEAN cluster, mapping the targetValues from the old protobuf data model to the dhp.OAF datamodel 2020-03-13 15:56:52 +01:00
Claudio Atzori 8fe7ae1482 xml formatting 2020-03-13 15:53:56 +01:00
Claudio Atzori 23a929177d updates to the graph require this to be an actual class 2020-03-13 14:56:35 +01:00
Przemysław Jacewicz d0c9b0cdd6 WIP promote job functions updated 2020-03-13 12:36:42 +01:00
Przemysław Jacewicz 8d9b3c5de2 WIP action payload mapping into OAF type moved, (local) graph table name enum created, tests fixed 2020-03-13 10:01:39 +01:00
Przemysław Jacewicz 5cc560c7e5 Removed unnecessary dependency on old OAF model 2020-03-13 09:57:46 +01:00
Sandro La Bruzzo addaaa091f migrate relation from RDD to Dataset 2020-03-13 09:13:20 +01:00
Przemysław Jacewicz 3f24593e51 WIP: promote job tests and test resources implementation snapshot 2020-03-11 17:06:29 +01:00
Przemysław Jacewicz 2e996d610f WIP: promote job functions implementation snapshot 2020-03-11 17:02:57 +01:00
Przemysław Jacewicz cc63cdc9e6 WIP: promote job implementation snapshot 2020-03-11 17:02:06 +01:00
Przemysław Jacewicz 69540f6f78 Serialization-safe supplier added 2020-03-11 16:59:05 +01:00
Przemysław Jacewicz e6e214dab5 Oaf merge and get strategy added 2020-03-11 16:58:17 +01:00
Przemysław Jacewicz f7454a9ed8 Added equals and hashCode for OAF types 2020-03-11 16:57:28 +01:00
Claudio Atzori 7b6f0c8756 reading graph dump as text files, encoded as newline-delimited JSON records, as indicated in the wiki 2020-03-10 17:19:17 +01:00
Claudio Atzori 60aedb1110 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-03-10 17:09:44 +01:00
Claudio Atzori a3f184fd3f added field websiteurl in related organizations 2020-03-10 17:08:58 +01:00
Claudio Atzori 0e95544495 fixed serialization for datasource subjects 2020-03-10 17:07:44 +01:00
Sandro La Bruzzo 7b28783fb4 updated unpaywall mapping 2020-03-08 17:00:19 +01:00
Michele Artini b6efa9d6ab Configuration of the SequenceFile Writer 2020-03-05 15:49:14 +01:00
Claudio Atzori ccb153de78 updated image 2020-03-05 15:11:42 +01:00
Claudio Atzori 5e342a555c no need to compute the inverse relClass, fixed text() in xpath expressions 2020-03-05 12:51:48 +01:00
Claudio Atzori 6ec04d4e02 specified column used to perform the join operation in the javadoc 2020-03-05 12:50:38 +01:00
Claudio Atzori 960619de98 updated image 2020-03-04 16:51:55 +01:00
Claudio Atzori e89aa52e58 updated image 2020-03-04 16:18:49 +01:00
Claudio Atzori 5474e8ac9f Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-03-04 14:54:46 +01:00
Claudio Atzori d7137e566e added dhp-doc-resources, aimed to include all the documentation resources used in the wiki pages 2020-03-04 14:54:41 +01:00
Michele Artini 7a2a466161 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-03-04 14:50:59 +01:00
Michele Artini 755eade2fb fix creation ids 2020-03-04 14:49:45 +01:00
Claudio Atzori 6379f32466 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-03-04 10:57:06 +01:00
Claudio Atzori 0233987603 introduced post processing step following the hive DB creation/population 2020-03-04 10:56:50 +01:00
Claudio Atzori 1e563bc15e introduced distinct properties driving the resouce usage for the XML record creation and the indexing phase 2020-03-04 10:55:11 +01:00
Claudio Atzori 9af3e904be close the SparkSession at the end 2020-03-04 10:53:31 +01:00
Michele Artini e7167b996a logs and closeable 2020-03-04 10:46:36 +01:00
Claudio Atzori 25ceec29ab code formatting 2020-03-04 10:44:24 +01:00
Claudio Atzori 63c00c5e88 fixed typo 2020-03-04 10:43:44 +01:00
Miriam Baglioni c37f2bd1b5 moved some classes to package to make code clearer 2020-03-03 16:42:23 +01:00
Miriam Baglioni d9d2060561 implementation for bulk tagging 2020-03-03 16:38:50 +01:00
Miriam Baglioni e80f80ca93 properties and workflow for new propagation 2020-03-02 17:03:31 +01:00
Claudio Atzori 9cf5ce2e66 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-03-02 17:03:10 +01:00
Claudio Atzori bc7cfd5975 indexing workflow WIP: fixed projects fundingtree xml conversion, prioritized links between results and projects when limiting them to 100 in the join procedure 2020-03-02 17:03:07 +01:00
Miriam Baglioni 50080c1b3c changed the implementation of addAll method. Before adding all the items in a collection, we check if the accumulator set is not empty 2020-03-02 16:41:37 +01:00
Miriam Baglioni 02815dd2cf update result for community moved in propagationconstants 2020-03-02 16:40:56 +01:00
Miriam Baglioni 95f8c3092f update for new propagation implementation and moving of updateResult for community business logic since the same can be used for result to community from organization and result to community from semrel 2020-03-02 16:40:17 +01:00
Miriam Baglioni 3d63f35dcb implementation of new propagation. Result to community for results linked to given organization. We exploit the hasAuthorInstitution semantic link to discover which results are related to institutions 2020-03-02 16:39:03 +01:00
Michele Artini 4b29a121b0 migration using spark in step2 2020-03-02 16:12:14 +01:00
Michele Artini 5445a57102 migration using spark in step2 2020-03-02 16:11:59 +01:00
Miriam Baglioni 3a4ccb26c0 New properties for the orcid to result propagation through semantic relation 2020-02-28 18:26:04 +01:00
Miriam Baglioni b50166b9ad None 2020-02-28 18:25:28 +01:00
Miriam Baglioni 550cb21c23 None 2020-02-28 18:24:39 +01:00
Miriam Baglioni b098ee0bae Changed the structure of typed row to conatain also list of authors with orcid 2020-02-28 18:23:51 +01:00
Miriam Baglioni 841f5523fe Added information and methods for the new propagation of orcid to result through semrel 2020-02-28 18:23:16 +01:00
Miriam Baglioni 2b7b05fb29 New propagation of ORCID to result exploiting the semantic relation connecting them. R has author with orcid o, R is bounf by strong semantic relationship with R1 that has the same author withouth orcid, then o is also associated to the author in R1 2020-02-28 18:22:41 +01:00
Miriam Baglioni 833c83c694 Wrong file name 2020-02-28 18:21:01 +01:00
Miriam Baglioni a86426776a Changed from Oaf to Result the type of the updateResult method parameter, not to be forced to cast each time 2020-02-28 18:20:19 +01:00
Sandro La Bruzzo b32655e48e changed code to save intermediate result 2020-02-27 10:18:46 +01:00
Claudio Atzori 60bc2b1a20 drop the hive DB before populating it from scratch 2020-02-27 10:10:55 +01:00
Sandro La Bruzzo f09e065865 incremented number of repartition 2020-02-26 19:26:19 +01:00
Sandro La Bruzzo 071f5c3e52 fixed NPE 2020-02-26 15:42:20 +01:00
Sandro La Bruzzo a1a6fc8315 fixed NPE 2020-02-26 15:42:13 +01:00
Sandro La Bruzzo 1edf02a3ce added log 2020-02-26 15:25:03 +01:00
Sandro La Bruzzo c3ecabd8e8 fixed NPE 2020-02-26 14:40:02 +01:00
Sandro La Bruzzo 5d0f46651b fixed NPE 2020-02-26 14:31:34 +01:00
Sandro La Bruzzo bc342bf73a fixed wrong generation type in summary 2020-02-26 12:49:47 +01:00
Sandro La Bruzzo 3112e21858 fixed typo 2020-02-26 12:22:43 +01:00
Sandro La Bruzzo 119ae6eef5 fixed wrong loop in the workflow 2020-02-26 12:18:50 +01:00
Sandro La Bruzzo 7936583a3d added generation of Scholix collection 2020-02-26 12:09:06 +01:00
Przemysław Jacewicz 02db368dc5 Merge branch 'master' into przemyslawjacewicz_actionmanager_impl_prototype 2020-02-26 11:50:20 +01:00
Sandro La Bruzzo 2ef3705b2c Added Provision workflow 2020-02-26 10:51:35 +01:00
Michele Artini 689908b2e9 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-02-25 16:00:51 +01:00
Michele Artini 93665773ea Fixed a problem with JavaRDD Union 2020-02-25 15:59:21 +01:00
Sandro La Bruzzo b021b8a2e1 Added index wf 2020-02-24 10:15:55 +01:00
Claudio Atzori 6a73fd5da5 in order to reuse the same XmlRecordFactory across different tasks, the state of contexts must be one per record built 2020-02-21 09:17:19 +01:00
Michele Artini 4c94e74a84 Added a missing dependency 2020-02-20 11:43:32 +01:00
Michele Artini d49cd2fdc6 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-02-20 11:21:54 +01:00
Miriam Baglioni 3f941a2af4 Merge branch 'master' into propagationCommunityToResult 2020-02-19 18:05:22 +01:00
Miriam Baglioni b2bdc9b99b merging project to result propagation logic to master 2020-02-19 18:04:59 +01:00
Miriam Baglioni a153a07997 none 2020-02-19 18:03:13 +01:00
Miriam Baglioni d0279af630 start to implement the business logic 2020-02-19 17:59:24 +01:00
Miriam Baglioni 5f63ab1416 to query the information system to get the list of comunities up to now. It will have a more general usage when introducing bulk tagging 2020-02-19 17:59:02 +01:00
Claudio Atzori d42dde52ba implemented method to merge relations 2020-02-19 17:29:05 +01:00
Miriam Baglioni 5ceb174d24 Merge branch 'master' into propagationCommunityToResult 2020-02-19 17:13:38 +01:00
Miriam Baglioni e8af7a6b64 Merge remote-tracking branch 'upstream/master' 2020-02-19 17:03:10 +01:00
Miriam Baglioni 79ff79b0cd propagation of result to community through semantic relation: C -> R and R -> isSupplementedBy R1 => C -> R1 2020-02-19 17:02:39 +01:00
Claudio Atzori 5e5e32cb48 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-02-19 16:56:52 +01:00
Claudio Atzori 33185fd0b7 ISLookupClientFactory moved in dhp-common 2020-02-19 16:56:38 +01:00
Michele Artini 5d3739b5cf migration of claims 2020-02-19 15:11:17 +01:00
Miriam Baglioni ab84163bb3 added set accumulator in TypedRow and used it to acucmulate country information in Country Propagation 2020-02-19 15:02:50 +01:00
Miriam Baglioni bb0fdf5e0a fix wrong source target in new relation 2020-02-19 15:00:46 +01:00
Miriam Baglioni 9e1678ccf8 fix error in workflow name 2020-02-19 14:59:24 +01:00
Miriam Baglioni 8aa3b4d7c0 adding to propagation constants the ones needed for propagation of project to result and addition of new accumulator Set in typed row to collect values of a type 2020-02-19 14:55:54 +01:00
Miriam Baglioni 7167673a58 implementation and configuration for propagation of project to result through semantic relation: P -> R1 and R1 -> supplemented by -> R2 => P -> R2 2020-02-19 14:54:18 +01:00
Michele Artini 173f1df1e5 saved a query for openaire production database 2020-02-19 10:15:08 +01:00
Sandro La Bruzzo 9a2d74ac82 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-02-19 10:13:45 +01:00
Sandro La Bruzzo e5d7cdf422 fixed sql query 2020-02-19 10:13:36 +01:00
Sandro La Bruzzo 2b8675462f refactoring code 2020-02-19 10:07:08 +01:00
Miriam Baglioni b81e6af429 added config for new propagation 2020-02-18 17:30:44 +01:00
Miriam Baglioni b736a9581c changed relclass and reltype in reelation specification for country propagation and implementation of propagation of result affiliation through institutional repositories 2020-02-18 17:27:28 +01:00
Miriam Baglioni ed262293a6 aligned to new snapshot version 1.1.6 2020-02-18 17:25:32 +01:00
Miriam Baglioni 2688a89c21 changed relclass and reltype in relation specification 2020-02-18 17:24:40 +01:00
Miriam Baglioni c0022fec9f moved on upper package to serve other propagations 2020-02-18 17:24:11 +01:00
Miriam Baglioni e0a777028a fix problem in parameters 2020-02-18 17:23:34 +01:00
Claudio Atzori ed76521d9b removed stale test resources, will be re-added later on 2020-02-18 11:51:08 +01:00
Claudio Atzori 0f364605ff removed stale tests, need to reimplemente them anyway 2020-02-18 11:48:19 +01:00
Miriam Baglioni 5868ff8a86 synch fork with master 2020-02-17 18:22:27 +01:00
Przemysław Jacewicz 958f0693d6 WIP: logic for promoting action sets added 2020-02-17 18:19:19 +01:00
Miriam Baglioni 18e4092d5c change name of properties dir 2020-02-17 18:07:06 +01:00
Miriam Baglioni bd0e504b42 changes to the wf configuration 2020-02-17 18:04:15 +01:00
Miriam Baglioni 3a9d723655 adding default parameters in code 2020-02-17 16:30:52 +01:00
Przemysław Jacewicz bea1a94346 Merge branch 'master' into przemyslawjacewicz_actionmanager_impl_prototype 
# Conflicts:
#	dhp-workflows/pom.xml
 2020-02-17 15:07:23 +01:00
Claudio Atzori 6a288625e5 fixed workflow outgoing node 2020-02-17 15:04:33 +01:00
Miriam Baglioni a5517eee35 adding the mkdirs for creation of propagation folder under provision on tmp 2020-02-17 14:20:42 +01:00
Miriam Baglioni 9abde5cfac removed outputPath from job parameters 2020-02-17 14:19:53 +01:00
Claudio Atzori 1b18fd4d54 sync with master branch 2020-02-17 13:49:46 +01:00
Claudio Atzori 5bae30f399 adding readme for dhp-schema 2020-02-17 13:38:33 +01:00
Sandro La Bruzzo 4f04759738 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-02-17 12:31:58 +01:00
Sandro La Bruzzo 76ee85141a added oozie job for DNET migration and implemented Spark job for extracting entities 2020-02-17 12:31:44 +01:00
Miriam Baglioni be2421d5d8 removed wrongly pushed file 2020-02-17 12:07:26 +01:00
Claudio Atzori c460e2d281 Aggiornare 'dhp-workflows/docs/oozie-installer.markdown' 2020-02-17 11:54:48 +01:00
Miriam Baglioni c7bc73aedf country propagation for results collected from institutional repositories 2020-02-17 11:44:48 +01:00
Michele Artini 176c5606bd aligned with origin/master, aligned model and mapping 2020-02-17 10:40:53 +01:00
Claudio Atzori 56d1810a66 working procedure for records indexing using Spark, via lib com.lucidworks.spark:spark-solr 2020-02-14 12:28:52 +01:00
Claudio Atzori 1ee1baa8c0 Merge branch 'master' into provision_indexing 2020-02-13 18:17:07 +01:00
Claudio Atzori a3d0b57b25 [maven-release-plugin] prepare for next development iteration 2020-02-13 18:11:33 +01:00
Claudio Atzori 6ed9a15bc8 [maven-release-plugin] prepare release dhp-1.1.5 2020-02-13 18:11:31 +01:00
Claudio Atzori 49e648f7c3 bumped version 2020-02-13 18:09:31 +01:00
Claudio Atzori f9fae97e09 test json files aligned with the latest model changes 2020-02-13 18:05:59 +01:00
Claudio Atzori 11cfd6bd9a integrated changes from master branch 2020-02-13 17:27:07 +01:00
Claudio Atzori bbf1b611b9 refereed, processingchargeamount and processingchargecurrency moved inside the Instance element. Introduced specific type to model Result's countries 2020-02-13 17:21:11 +01:00
Claudio Atzori 1fee6e2b7e implemented XML records construction and serialization, indexing WIP 2020-02-13 16:53:27 +01:00
Claudio Atzori 956da2f923 added Saxon-HE extension functions and Transformer factory class 2020-02-13 16:49:45 +01:00
Michele Artini 80cb52593f bug fixing 2020-02-13 15:34:13 +01:00
Michele Artini cdea0dae75 bug fixing 2020-02-12 16:34:00 +01:00
Michele Artini 69336195d3 simplifications 2020-02-12 11:12:38 +01:00
Michele Artini 06c2fd6df9 bug fixing 2020-02-11 15:29:50 +01:00
Michele Artini 5fc09b179c bug fixing 2020-02-11 12:48:03 +01:00
Michele Artini 95740767e0 Ready for tests 2020-02-10 16:04:06 +01:00
Sandro La Bruzzo 7f11d06a1f upgraded version of dnet-pace-core in pom.xml 2020-02-10 12:58:59 +01:00
Michele Artini 181e8498d4 ... 2020-02-07 16:02:49 +01:00
Przemysław Jacewicz 86b60268bb actionmanager implementation prototyping 2020-02-06 19:14:41 +01:00
Michele Artini bb1533a07e partial commit 2020-02-05 15:35:40 +01:00
Michele Artini fbb0fc140b partial implementation of migration 2020-02-04 15:25:47 +01:00
Claudio Atzori d3b96f102b builder pattern screws up the Parquet schema inference method, avoid using it in the bean definitions 2020-02-04 14:10:58 +01:00
Claudio Atzori ed290ca8d7 builder pattern 2020-02-03 10:35:51 +01:00
Claudio Atzori 7ba0f44d05 WIP 2020-01-30 18:21:07 +01:00
Claudio Atzori 49ef2f4eb1 removed input parameter specification, SparkXmlRecordBuilderJob doesn't need hive 2020-01-30 18:20:26 +01:00
Claudio Atzori b5e1e2e5b2 reintegrated changes from fcbc4ccd70 2020-01-30 18:11:04 +01:00
Claudio Atzori 7bacd6812e Merge branch 'provision_indexing' of https://code-repo.d4science.org/D-Net/dnet-hadoop into HEAD 
 Conflicts:
	dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/graph/GraphJoiner.java
	dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/graph/MappingUtils.java
	dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/graph/RelatedEntity.java
	dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/graph/SparkXmlRecordBuilderJob.java
 2020-01-30 17:59:46 +01:00
Claudio Atzori b2691a3b0a save adjacency list as JoinedEntity 2020-01-30 17:46:29 +01:00
Claudio Atzori 1ecca69f49 added annotation to ignore method during the serialization 2020-01-30 17:45:28 +01:00
Claudio Atzori 8c2aff99b0 joining entities using T x R x S, WIP: last representation based on LinkedEntity type 2020-01-29 15:40:33 +01:00
Sandro La Bruzzo ad4387dd38 added property to gitignore 2020-01-27 10:56:40 +01:00
Sandro La Bruzzo 24219d1204 Merge branch 'master' of https://code-repo.d3science.org/D-Net/dnet-hadoop 2020-01-27 10:54:11 +01:00
Sandro La Bruzzo 0dff14b28e added property to gitignore 2020-01-27 10:53:54 +01:00
Sandro La Bruzzo 19a80e4638 implemented workfow for aggregation and generation of infospace graph 2020-01-24 09:58:55 +01:00
Claudio Atzori fcbc4ccd70 a bit of docs doesn't hurt 2020-01-24 08:43:23 +01:00
Claudio Atzori a55f5fecc6 joining entities using T x R x S method with groupByKey, WIP: making target objects (T) have lower memory footprint 2020-01-24 08:17:53 +01:00
Michele Artini 6bfe2dc96e partial implementation 2020-01-22 16:00:23 +01:00
Claudio Atzori 799929c1e3 joining entities using T x R x S method with groupByKey 2020-01-21 16:35:44 +01:00
Michele Artini f6eccdde33 partial implementation 2020-01-21 14:17:05 +01:00
Michele Artini cd114f1c3b partial update 2020-01-21 12:32:10 +01:00
Michele Artini b35c59eb42 partial implementation of entities from db 2020-01-20 16:04:19 +01:00
Sandro La Bruzzo fa7504bf29 removed DLI stuff should be in a branch 2020-01-20 10:28:00 +01:00
Michele Artini 81f82b5d34 partial implementation of applications to migrate entities 2020-01-17 15:26:21 +01:00
Claudio Atzori 1cd6899480 merged from master 2020-01-17 14:25:57 +01:00
Claudio Atzori 749b0660ab instance URLs must be repeatable 2020-01-17 14:22:15 +01:00
Claudio Atzori 63c0db4ff8 instance URLs must be repeatable 2020-01-16 15:54:53 +02:00
Claudio Atzori 97c239ee0d WIP: trying to find a way to build the records for the index 2020-01-16 12:02:28 +02:00
miconis 4955be0197 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-01-14 15:03:44 +02:00
miconis f61adfc2bb minor changes 2020-01-14 15:03:27 +02:00
miconis 9bdcb02179 minor changes and update of the configuration for publications 2020-01-14 15:01:03 +02:00
Michele Artini f7b9a7a9af entity migration (partial implementation) 2020-01-10 15:55:23 +01:00
Michele Artini 7229fecbcf fix warnings in poms 2019-12-20 13:41:08 +01:00
Sandro La Bruzzo dd21db7036 fixed stuff 2019-12-18 16:28:22 +01:00
Claudio Atzori 7ba586d2e5 oozie workflow aimed to build the adjacency lists representation of the graph, needed to build the records to be indexed 2019-12-17 16:24:49 +01:00
Sandro La Bruzzo 76efcde4fd using new branch decisionTreeDedup 2019-12-13 12:20:35 +01:00
Sandro La Bruzzo b4392f9f43 implemented DedupRecord factory for missing entities 2019-12-13 09:40:02 +01:00
miconis 545e940007 implementation of the mergeFrom for the Datasources 2019-12-12 15:36:41 +01:00
Sandro La Bruzzo 39367676d7 implemented DedupRecord factory with the merge of project 2019-12-12 15:18:48 +01:00
Sandro La Bruzzo 6b45e37e22 implemented DedupRecord factory with the merge of organizations 2019-12-11 16:57:37 +01:00
Sandro La Bruzzo abd9034da0 implemented DedupRecord factory with the merge of publications 2019-12-11 15:43:24 +01:00
miconis 4b66b471a4 implementation of the sorting by trust mechanism and the merge of oaf entities 2019-12-10 14:57:16 +01:00
Sandro La Bruzzo cc63706347 Implemented deduplication on spark 2019-12-06 13:38:00 +01:00
Claudio Atzori 6a7bee5e43 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2019-11-14 15:43:07 +01:00
Claudio Atzori 0c4b316f82 align Result model with the latest OpenAIRE schema changes introduced in the protobuf model 2019-11-14 15:42:52 +01:00
Sandro La Bruzzo aad0cb40b7 Added schema Scholexplorer 2019-11-14 10:34:09 +01:00
Claudio Atzori 5711e75f67 use ${project.version} whenever possible 2019-11-08 17:41:51 +01:00
Claudio Atzori 245b4cbbb3 removed import limit 2019-11-08 17:41:01 +01:00
Claudio Atzori 7fe6835b47 [maven-release-plugin] prepare for next development iteration 2019-11-07 17:39:30 +01:00
Claudio Atzori 58918967d9 [maven-release-plugin] prepare release dhp-1.0.4 2019-11-07 17:39:27 +01:00
Claudio Atzori 2243089b78 Author PIDs include also provenance information 2019-11-07 17:38:37 +01:00
Claudio Atzori 5308f05a02 allow to speficy the target hive DB name in the infospace import workflow 2019-11-07 17:38:09 +01:00
Claudio Atzori a52d5bde4f simplified import procedure, maps the infospace as hive tables 2019-11-06 17:45:52 +01:00
Claudio Atzori 1e7a2ac41d align parmeter names, graph import procedure WIP 2019-11-04 17:41:01 +01:00
Claudio Atzori f39148dab8 [maven-release-plugin] prepare for next development iteration 2019-11-04 12:34:48 +01:00
Claudio Atzori 34b0e7b40a [maven-release-plugin] prepare release dhp-1.0.3 2019-11-04 12:34:46 +01:00
Claudio Atzori 439ad80d81 conversion utilities from protobuffer model to DHP model moved in dnet-mapreduce-jobs. Removed also the relative protobuf dependencies 2019-11-04 12:33:23 +01:00
Claudio Atzori 32ed4ae8d6 conversion utilities from protobuffer model to DHP model moved in dnet-mapreduce-jobs. Removed also the relative protobuf dependencies 2019-11-04 12:28:56 +01:00
Sandro La Bruzzo fd0ad82111 [maven-release-plugin] prepare for next development iteration 2019-10-31 12:08:51 +01:00
Sandro La Bruzzo f224613b40 [maven-release-plugin] prepare release dhp-1.0.2 2019-10-31 12:08:49 +01:00
Sandro La Bruzzo e13c30cc96 [maven-release-plugin] rollback the release of dhp-1.0.2 2019-10-31 12:07:04 +01:00
Sandro La Bruzzo 4da5239203 [maven-release-plugin] prepare release dhp-1.0.2 2019-10-31 12:06:14 +01:00
Sandro La Bruzzo db8b346edd [maven-release-plugin] rollback the release of 1.0.1 2019-10-31 11:49:05 +01:00
Sandro La Bruzzo fc80052173 [maven-release-plugin] prepare for next development iteration 2019-10-31 11:47:42 +01:00
Sandro La Bruzzo 3150c7ce6d [maven-release-plugin] prepare release 1.0.1 2019-10-31 11:47:40 +01:00
Sandro La Bruzzo fe2bd4df72 changed info about git 2019-10-31 11:46:07 +01:00
Sandro La Bruzzo 18ec8e8147 moved protoutils function to dhp-schemas 2019-10-31 11:31:37 +01:00
Sandro La Bruzzo 997e57d45b Added entity filter to spark class 2019-10-30 12:19:03 +01:00
Sandro La Bruzzo a336956708 added defautl property to job 2019-10-30 12:01:42 +01:00
Claudio Atzori 78b5b57e86 trying to make the spark action to be run as spark2 2019-10-29 18:56:34 +01:00
Claudio Atzori c8bb81cd9a align dependencies with IIS cluster 2019-10-29 18:10:20 +01:00
Claudio Atzori 5e32a4066a depending on dnet-openaire-data-protos:3.9.5-proto250 2019-10-28 18:17:32 +01:00
Sandro La Bruzzo fe62ccd6dd implemented oozie wf 2019-10-28 12:12:50 +01:00
Sandro La Bruzzo 06912fd0d3 fixed test 2019-10-28 12:06:30 +01:00
Sandro La Bruzzo 9ee4e5a196 remove a bit of syntactic sugar on the object inheritance :( 2019-10-25 18:10:30 +02:00
Sandro La Bruzzo c74335ebc7 resolved conflict 2019-10-25 14:34:50 +02:00
Sandro La Bruzzo 8c902c500a minor fix 2019-10-25 14:33:54 +02:00
miconis 9fa5aebe9c minor changes 2019-10-25 12:52:28 +02:00
miconis 551eda1600 dataset, orp and software mapping implemented. addition of test resources for results. implementation of tests to check the result of the mapping 2019-10-25 12:48:25 +02:00
Sandro La Bruzzo eef14fade3 fixed conflict 2019-10-25 11:58:20 +02:00
Sandro La Bruzzo 0ea7e861ab added organizations test 2019-10-25 11:56:28 +02:00
miconis 4908165e05 implementation of the createPublication method to map publications 2019-10-25 11:54:14 +02:00
miconis df37bd6aaf placeholders for setters in createpublication 2019-10-25 10:57:19 +02:00
Claudio Atzori 331b853ad6 Merge branch 'master' of https://code-repo.d3science.org/D-Net/dnet-hadoop 2019-10-25 10:55:43 +02:00
Claudio Atzori 4eaff36ea6 a bit of syntactic sugar on the object inheritance 2019-10-25 10:55:35 +02:00
Sandro La Bruzzo c8d6d6bbd1 implemented organization mapping 2019-10-25 10:23:51 +02:00
miconis b525b54130 starting implementing the createPublication class 2019-10-25 09:55:31 +02:00
Claudio Atzori b0aa7cd7fb fluent setters 2019-10-25 09:53:08 +02:00
Claudio Atzori 4b331790e7 resolved conflicts 2019-10-25 09:45:12 +02:00
Claudio Atzori c929c1dfac more proto 2 graph model mappings 2019-10-25 09:25:36 +02:00
Sandro La Bruzzo 09ffda03a2 removed circular dependencies 2019-10-25 09:24:18 +02:00
Sandro La Bruzzo a10d071cf4 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2019-10-24 17:55:44 +02:00
Sandro La Bruzzo 3a8bb11695 mapped first part 2019-10-24 17:55:40 +02:00
Claudio Atzori d46371ceab Merge branch 'master' of https://code-repo.d2science.org/D-Net/dnet-hadoop 2019-10-24 17:43:55 +02:00
Claudio Atzori 0d88f9a6a4 added mapping for projects 2019-10-24 17:43:42 +02:00
Sandro La Bruzzo 2dd9572f41 added Mapping of OriginalDescription 2019-10-24 17:36:44 +02:00
miconis 351d850ad3 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2019-10-24 17:29:07 +02:00
miconis b66a7e3030 publication test added 2019-10-24 17:29:01 +02:00
Sandro La Bruzzo 6c32d418ac added conversion of ExtraInfo 2019-10-24 17:26:55 +02:00
Claudio Atzori 5f339a2c24 added mappings for basic types 2019-10-24 17:21:45 +02:00
Claudio Atzori 52abfcfac7 Field<T> is an actual class, fluent setters 2019-10-24 17:17:12 +02:00
Sandro La Bruzzo 9d04111391 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2019-10-24 17:05:52 +02:00
Sandro La Bruzzo 0902bac7dd fixed conflict 2019-10-24 17:05:42 +02:00
Claudio Atzori d8bfaa3687 added mapping for relations 2019-10-24 17:04:13 +02:00
Sandro La Bruzzo d2965636e0 created test for convert json into new OAF data model 2019-10-24 17:02:35 +02:00
Claudio Atzori 79c4f1bbd8 Protobuf to internal graph model, early steps 2019-10-24 16:56:13 +02:00
Claudio Atzori d38aeb8c6e DataInfo.provenanceaction not repeatable, fluent setters 2019-10-24 16:55:38 +02:00
Sandro La Bruzzo 5744a64478 added module dhp=graph-mapper 2019-10-24 16:00:28 +02:00
Sandro La Bruzzo ed14a40890 removed unuesd directory 2019-10-24 11:40:47 +02:00
Sandro La Bruzzo 25a62b79e5 added new model for information space dataframes 2019-10-24 11:39:41 +02:00
Sandro La Bruzzo 5a8a323f2a dhp-collection-worker integrated in dhp-workflows 2019-10-24 11:36:59 +02:00
Sandro La Bruzzo c8e3e4d7c3 Refactoring dependencies versions 2019-10-24 10:20:31 +02:00
Claudio Atzori dd1d6fcb01 moved libs in main pom file 2019-10-18 10:50:55 +02:00
Claudio Atzori 176a13601b commented out maven plugin for integration tests 2019-10-18 10:50:32 +02:00
Claudio Atzori 3f08ed94e3 replacing iis references with dhp 2019-10-18 10:49:34 +02:00
Claudio Atzori e97656e915 fixed sandbox directory assignment 2019-10-18 10:48:02 +02:00
Claudio Atzori 0c284e0a51 doc 2019-10-18 09:42:41 +02:00
Claudio Atzori c7654b6fe3 renamed collection & transformation oozie workflow files 2019-10-18 09:42:20 +02:00
Claudio Atzori 44d7e85797 imported oozie-installer.markdown docs from https://github.com/openaire/iis/blob/master/iis-wf/docs/oozie-installer.markdown 2019-10-17 18:43:43 +02:00
Claudio Atzori 27db5afdad integrating the oozie workflow build/deploy/run mechanism, took inspiration from iis 2019-10-17 18:38:30 +02:00
Sandro La Bruzzo bbb87d0e3d implemented saxonHE on transformation spark job 2019-10-10 11:33:51 +02:00
Sandro La Bruzzo 4b8c7c279d Added documentation on a class, and reused ArgumetApplicationParser on dhp-aggregation 2019-10-07 17:02:53 +02:00
Sandro La Bruzzo a423a6ebfd Created a generic Argument parser to be used in all modules 2019-10-03 12:22:44 +02:00
Sandro La Bruzzo b259cd0bd8 changed wrong version 2019-10-02 15:54:01 +02:00
Sandro La Bruzzo 785b9c7cda removed dhp-mdstore-manager from pom since it was migrated to another repository 2019-10-02 15:51:04 +02:00
Sandro La Bruzzo 2e6c05a0e1 removed dhp-applications/dhp-mdstore-manager-app since it was migrated to another repository 2019-10-02 15:50:04 +02:00
Sandro La Bruzzo 27ba72da96 review readme 2019-10-02 15:26:58 +02:00
Sandro La Bruzzo d584c79bf7 test commit 2019-10-02 15:12:09 +02:00
luosolo b877bf8a40 test commit 2019-10-02 15:08:21 +02:00
luosolo a36ca1b7e9 fixed poms 2019-10-02 14:59:02 +02:00
luosolo 5b48bb9be1 Removed springboot dependencies, is useless 2019-10-02 14:45:12 +02:00
Sandro La Bruzzo 53ec9bccca changed the implemetation of RabitMQ Comunication 2019-04-16 12:28:01 +02:00
Sandro La Bruzzo 403c13eebf Implemented message manager, Fixed bug on collection worker, implemented Collecion and Transform spark job 2019-04-11 15:39:29 +02:00
enricoottonello 58c4e1f725 cleaned properties 2019-04-09 12:17:03 +02:00
Sandro La Bruzzo 9294851a6c implemented comunication layer using rabbitMq between oozie node and Dnet 2019-04-05 12:19:25 +02:00
Sandro La Bruzzo 3f4ba71bbd resolved conflicts 2019-04-03 16:12:57 +02:00
Sandro La Bruzzo ded6aef5e1 moved collector worker 2019-04-03 16:05:16 +02:00
enricoottonello 2f79eb930a added apidescriptor 2019-04-03 16:03:44 +02:00
Sandro La Bruzzo c2ecbf5572 moved collector worker 2019-04-03 16:03:36 +02:00
enricoottonello b316467608 added common module 2019-04-03 10:53:54 +02:00
Michele Artini 1a1ec7da8e Merge branch 'master' of https://github.com/dnet-team/dnet-hadoop.git 2019-04-01 10:40:59 +02:00
Michele Artini f8c8b6669f ui 2019-04-01 10:40:09 +02:00
Sandro La Bruzzo 0b503949de Merge branch 'master' of https://github.com/dnet-team/dnet-hadoop 2019-03-25 15:19:08 +01:00
Sandro La Bruzzo b2cd76831e added common cli 2019-03-25 15:18:48 +01:00
Sandro La Bruzzo 12c65eab4c implemented command line 2019-03-25 15:18:31 +01:00
Michele Artini b1200b6f46 ui 2019-03-25 11:54:18 +01:00
Michele Artini 6f813fbc8e ui 2019-03-22 15:15:57 +01:00
Michele Artini e2f1013b3d logs and ui 2019-03-22 11:41:00 +01:00
Michele Artini 405f418dfc fix a conflict 
Merge branch 'master' of https://github.com/dnet-team/dnet-hadoop
 2019-03-22 10:24:42 +01:00
Michele Artini 55aa7e1f26 new info 2019-03-22 10:16:47 +01:00
Enrico Ottonello 3b5f291df2 added angular client 2019-03-22 10:13:56 +01:00
Enrico Ottonello 639483090a added swagger comments to input parameters 2019-03-22 10:11:46 +01:00
Enrico Ottonello 042d477878 added versions support 2019-03-20 15:36:23 +01:00
Sandro La Bruzzo 859957d0fd Merge branch 'master' of https://github.com/dnet-team/dnet-hadoop 2019-03-20 09:49:53 +01:00
Enrico Ottonello 46bc3e1f53 added view on mdstore and transaction tables 2019-03-19 13:34:40 +01:00
Enrico Ottonello cefcb38e62 added module dhp-applications 2019-03-18 16:02:23 +01:00
enrico ed484bf24e Merge branch 'master' of https://github.com/dnet-team/dnet-hadoop.git 2019-03-18 15:38:04 +01:00
Enrico Ottonello 126d89ed38 first implementation of dhp-mdstore-manager-app 2019-03-18 15:30:07 +01:00
Michele De Bonis 2af1d61d43 test 2019-03-18 11:36:10 +01:00
Sandro La Bruzzo 6156562893 Added test 2019-03-18 10:47:28 +01:00
Sandro La Bruzzo 49d8cc716e added oozie wf 2019-03-18 10:46:07 +01:00
Sandro La Bruzzo c0da3da4c4 addedd common modules for CollectionBuilder in spark 2019-03-18 10:45:30 +01:00
Sandro La Bruzzo e67d9ee1a9 added first implementation of dnet-workflows 2019-03-18 10:44:35 +01:00
Sandro La Bruzzo 37b84b6afa Added description of the module 2019-03-13 14:53:35 +01:00
luosolo 1eb0281b38 refactored structure of the project 2019-03-13 14:43:20 +01:00
luosolo c10770cd3e added module that allows to collect data into HDFS 2019-03-12 15:40:55 +01:00
luosolo fe949276f0 deleted test to verify if I can push something 2018-01-16 14:31:26 +01:00
luosolo 8e03de306c added test 2018-01-16 14:26:22 +01:00
Claudio Atzori f072ed91b2 first commit 2018-01-16 14:21:13 +01:00
Claudio Atzori 2c27a2762d added common ignores 2018-01-16 14:19:39 +01:00
Claudio Atzori 47c4d75733 added common ignores 2018-01-16 14:17:06 +01:00
Claudio Atzori c877e5031e added common ignores 2018-01-16 14:16:00 +01:00