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459 Commits

Author SHA1 Message Date
Spyros Zoupanos af62b14f91 Adding the main java files, the directory structure and main workflow file 2020-05-07 19:00:03 +03:00
Michele Artini ac0da5a7ee Partial implementation of broker events 2020-05-07 12:31:26 +02:00
Claudio Atzori 17860d3ab6 general changes in the RAW graph mapping: missing collectedfrom/hostedby causes records to be skipped; factored out most of the constants in ModelConstants class (dhp-schemas) 2020-05-06 13:20:02 +02:00
Claudio Atzori fdfecc9578 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-05-06 11:28:01 +02:00
Claudio Atzori c79e2f5977 drop workingPath before starting the dedup workflow 2020-05-06 11:27:44 +02:00
Michele Artini 8f30a09d84 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-05-05 17:12:22 +02:00
Michele Artini ccc609f909 new module for the production of broker events 2020-05-05 17:09:00 +02:00
Claudio Atzori 0825321d0b improved unit tests in dhp-aggregation 2020-05-05 12:39:04 +02:00
Claudio Atzori 4a8487165c using long param names in wf definition 2020-05-04 19:19:29 +02:00
Claudio Atzori a2fc37df5f adjusted parameters 2020-05-04 19:18:59 +02:00
Claudio Atzori f1b7e14036 code formatting 2020-05-04 19:18:34 +02:00
miconis 085cf173d7 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-05-04 12:08:20 +02:00
miconis 3df703f67d mergerels added to propagate relations 2020-05-04 12:08:12 +02:00
Claudio Atzori bac37b3973 fixed children expansion in XML records 2020-05-04 11:51:17 +02:00
Claudio Atzori 077ccd8743 stats wf properties cleanup 2020-05-04 11:41:46 +02:00
Michele Artini eb9bd42970 fixed a problem with journals 2020-04-30 11:06:05 +02:00
Michele Artini a0a6109bbc fixed a problem with journals 2020-04-30 11:03:46 +02:00
Claudio Atzori 439c6255a2 cleanup 2020-04-29 19:09:07 +02:00
Claudio Atzori 77ac995770 cleaned up poms, added descriptions 2020-04-29 18:44:17 +02:00
Claudio Atzori 8fd81e863d added default value for the external_stats_db_name 2020-04-29 15:36:24 +02:00
Claudio Atzori c6f3ff4462 stats workflow content relocated into common package; added <global> property definitions in stats workflow.xml 2020-04-29 14:29:27 +02:00
miconis e0d14fe4f8 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-04-29 13:02:53 +02:00
miconis 0352d3b0ba entity dumps in dedup compressed 2020-04-29 13:02:34 +02:00
Michele Artini c43b4c8962 formatting 2020-04-29 12:56:58 +02:00
Michele Artini a5d7007005 Fix relations in migration 
Fix pom.xml in dhp-stats-update
 2020-04-29 12:05:41 +02:00
Claudio Atzori 3616d0f88d Merge pull request 'Adding the stats workflow to the dnet-hadoop hierarchy' (#6) from spyros/dnet-hadoop:master into master 
Integrating stats update workflow.
 2020-04-29 10:35:02 +02:00
Claudio Atzori 964972d29a added data provision workflow definition WIP 2020-04-29 09:25:50 +02:00
miconis 62e467eb0c assertion numbers updated to fit the new implementation of the pace-core 2020-04-28 11:46:23 +02:00
Claudio Atzori 6f5b899038 reformatted code according to the updated style descriptor 2020-04-28 11:23:29 +02:00
Claudio Atzori ac25f2d8d1 integrated changes from master 2020-04-28 08:55:28 +02:00
Claudio Atzori a0bdbacdae switched automatic code formatting plugin to net.revelc.code.formatter:formatter-maven-plugin 2020-04-27 14:52:31 +02:00
Claudio Atzori 7a3f8085f7 switched automatic code formatting plugin to net.revelc.code.formatter:formatter-maven-plugin 2020-04-27 14:45:40 +02:00
Michele Artini 1260d03eba skip empty projects 2020-04-27 13:51:13 +02:00
Claudio Atzori 268462623a refined definition of equals and hash methods for Oaf model classes, now based on entity identifier, while relations consider sourceid, targetid and relationship semantic; Factored out function to group Oaf objects in grouping operations; Raw graph creation procedure merges entities and relationships providing the same identity 2020-04-24 14:42:01 +02:00
Claudio Atzori a3e480d1c9 implmented DispatchEntitiesApplication using spark2 datasets 2020-04-24 14:36:53 +02:00
Claudio Atzori 48157e0fc4 GraphHiveImporterJob moved in dedicate package 2020-04-24 14:32:28 +02:00
Claudio Atzori 278fc9d276 code formatting 2020-04-23 18:51:38 +02:00
miconis 5414236644 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-04-23 18:17:23 +02:00
miconis 8d258c85ff spark dedup test fixed, sample for dataset and orp added, test implemented 2020-04-23 18:16:20 +02:00
Michele Artini 072eae3803 fixed a problem with missing contexts 2020-04-23 16:42:49 +02:00
Michele Artini b164d96874 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-04-23 16:19:16 +02:00
Michele Artini d920ce501e fixed a problem with missing instances 2020-04-23 16:18:40 +02:00
Claudio Atzori 8851050814 replaced hive_db_name with hiveDbName 2020-04-23 08:36:40 +02:00
Claudio Atzori 91f81107b1 applying code formatting 2020-04-23 07:52:32 +02:00
Claudio Atzori 1e7583c5a6 filtered invisible records in data provision workflow 2020-04-23 07:51:34 +02:00
Claudio Atzori 9ddafd46ca fixed dedup record id prefix, set the correct dataInfo in the DedupRecordFactory 2020-04-23 07:50:18 +02:00
Claudio Atzori ade4cb97af fixed parameters passed to the postprocessing action in the workflow mapping the graph as hive DB 2020-04-22 18:24:06 +02:00
Claudio Atzori e81960335c Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-04-22 10:46:37 +02:00
Michele Artini 9e4d58f505 ResultType 2020-04-22 10:07:26 +02:00
Claudio Atzori c891661822 small adjustments in the graph2hive workflow 2020-04-21 18:52:23 +02:00
Claudio Atzori 0b55795d4d small adjustments in the provisioning workflow 2020-04-21 16:15:04 +02:00
Claudio Atzori 88fbb3a353 added sparkSqlWarehouseDir to the default extra spark options passed to each workflow 2020-04-21 16:13:43 +02:00
Claudio Atzori cd320efa96 added extra spark options to graph to hive workflow 2020-04-21 16:12:20 +02:00
Claudio Atzori 91e72a6944 Dataset based implementation for SparkCreateDedupRecord phase, fixed datasource entity dump supplementing dedup unit tests 2020-04-21 12:06:08 +02:00
miconis 5c9ef08a8e spark dedup test fixed 2020-04-21 10:19:04 +02:00
Claudio Atzori d772d967aa restored changes from master branch 2020-04-20 18:53:06 +02:00
Claudio Atzori eb8a020859 fixed behaviour of DedupRecordFactory 2020-04-20 18:44:06 +02:00
Claudio Atzori ede1af3d85 Merge branch 'master' into deduptesting 2020-04-20 16:52:14 +02:00
miconis 1102e32462 SparkDedupTest updated and organization dump fixed 2020-04-20 16:49:01 +02:00
Claudio Atzori 667d23c58b finalising Actionset migration workflow 2020-04-20 16:45:21 +02:00
miconis 4da13e4570 Revert "Merge branch 'master' into deduptesting" 
This reverts commit 772f75d167, reversing
changes made to 5f45f2c77f.
 2020-04-20 16:04:49 +02:00
Claudio Atzori 9147af7fed actionsets migration workflow moved in dhp-workflows/dhp-actionmanager 2020-04-20 15:24:33 +02:00
miconis 772f75d167 Merge branch 'master' into deduptesting 2020-04-20 14:50:12 +02:00
Claudio Atzori d714bfb4d4 collectedfrom field moved in common parent class Oaf.java 2020-04-20 12:25:19 +02:00
Michele Artini 8ff7facfa3 fixed collectedFrom ID 2020-04-20 11:09:27 +02:00
Michele Artini 25307965d2 add a default datainfo if missing 2020-04-20 09:43:27 +02:00
Michele Artini d2058fdc47 tests 2020-04-20 09:31:14 +02:00
Michele Artini 478a958f09 tests 2020-04-20 09:15:27 +02:00
Claudio Atzori 5f45f2c77f Merge branch 'master' into deduptesting 2020-04-18 12:46:40 +02:00
Claudio Atzori ad7a131b18 introduced common project code formatting plugin, works on the commit hook, based on https://github.com/Cosium/git-code-format-maven-plugin, applied to each java class in the project 2020-04-18 12:42:58 +02:00
Claudio Atzori a2938dd059 cleanup 2020-04-18 12:24:22 +02:00
Claudio Atzori 9374ff03ea Merge branch 'master' into deduptesting 2020-04-18 12:06:58 +02:00
Claudio Atzori 71813795f6 various refactorings on the dnet-dedup-openaire workflow 2020-04-18 12:06:23 +02:00
miconis 6450bb0daa test for softwares dedup added. definition of orp, dataset and sw dedup configurations 2020-04-17 17:31:59 +02:00
Claudio Atzori 038ac7afd7 relation consistency workflow separated from dedup scan and creation of CCs 2020-04-17 13:12:44 +02:00
Claudio Atzori c92bfeeaee Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-04-17 13:07:52 +02:00
Sandro La Bruzzo 01ea7721f3 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-04-17 12:12:25 +02:00
Sandro La Bruzzo 5e2fa996aa fixed problem with conversion of long into string 2020-04-17 12:11:51 +02:00
miconis 418cf94642 implementation of the deletedbyinference test in propagating relations 2020-04-17 10:40:21 +02:00
Claudio Atzori cb0952428e Merge branch 'master' into deduptesting 2020-04-16 14:42:25 +02:00
Claudio Atzori cc21bbfb1a Merge branch 'deduptesting' of https://code-repo.d4science.org/D-Net/dnet-hadoop into deduptesting 2020-04-16 14:41:37 +02:00
Claudio Atzori ec5dfc068d added spark.sql.shuffle.partitions=3840 to dedup scan wf 2020-04-16 14:41:28 +02:00
Claudio Atzori 09f356b047 Merge pull request 'Closes #7: subdirs inside graph table dirs' (#8) from przemyslaw.jacewicz/dnet-hadoop:przemyslawjacewicz_7_distcp_configuration_fix into master 
Run the code from this PR in isolation and it worked fine. Thanks!
 2020-04-16 14:38:46 +02:00
Claudio Atzori 3437383112 Merge branch 'master' into deduptesting 2020-04-16 12:46:14 +02:00
miconis 0eccbc318b Deduper class (utilities for dedup) cleaned. Useless methods removed 2020-04-16 12:36:37 +02:00
Claudio Atzori 76d23895e6 Merge branch 'deduptesting' of https://code-repo.d4science.org/D-Net/dnet-hadoop into deduptesting 2020-04-16 12:18:32 +02:00
miconis 6a089ec287 minor changes 2020-04-16 12:15:38 +02:00
Claudio Atzori 376efd67de removed prepare statement in spark action 2020-04-16 12:14:16 +02:00
miconis 9b36458b6a Merge branch 'deduptesting' of code-repo.d4science.org:D-Net/dnet-hadoop into deduptesting 2020-04-16 12:13:58 +02:00
miconis cd4d9a148f creating temporary directories in dedup test 2020-04-16 12:13:26 +02:00
Claudio Atzori b39ff36c16 improving the wf definitions 2020-04-16 12:11:37 +02:00
Claudio Atzori 011b342bc9 trying to avoid OOM in SparkPropagateRelation 2020-04-16 11:13:51 +02:00
Claudio Atzori 069ef5eaed trying to avoid OOM in SparkPropagateRelation 2020-04-15 21:23:21 +02:00
Claudio Atzori 8eedfefc98 try to introduce intermediate serialization on hdfs to avoid OOM 2020-04-15 18:35:35 +02:00
Przemysław Jacewicz da019495d7 [dhp-actionmanager] target dir removal added for distcp actions 2020-04-15 17:56:57 +02:00
miconis 5689d49689 minor changes 2020-04-15 16:34:06 +02:00
Claudio Atzori c439d0c6bb PromoteActionPayloadForGraphTableJob reads directly the content pointed by the input path, adjusted promote action tests (ISLookup mock) 2020-04-15 16:18:33 +02:00
Claudio Atzori ff30f99c65 using newline delimited json files for the raw graph materialization. Introduced contentPath parameter 2020-04-15 16:16:20 +02:00
Sandro La Bruzzo 3d3ac76dda Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-04-15 15:24:01 +02:00
Sandro La Bruzzo 74a7fac774 fixed problem with timestamp 2020-04-15 15:23:54 +02:00