forked from D-Net/dnet-hadoop
reading graph dump as text files, encoded as newline-delimited JSON records, as indicated in the wiki
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60aedb1110
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@ -3,7 +3,7 @@ package eu.dnetlib.dhp.graph;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import eu.dnetlib.dhp.application.ArgumentApplicationParser;
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import org.apache.commons.io.IOUtils;
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import org.apache.hadoop.io.Text;
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import org.apache.spark.SparkConf;
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import org.apache.spark.api.java.JavaSparkContext;
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import org.apache.spark.sql.Encoders;
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import org.apache.spark.sql.SaveMode;
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@ -13,7 +13,9 @@ public class SparkGraphImporterJob {
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public static void main(String[] args) throws Exception {
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final ArgumentApplicationParser parser = new ArgumentApplicationParser(IOUtils.toString(SparkGraphImporterJob.class.getResourceAsStream("/eu/dnetlib/dhp/graph/input_graph_parameters.json")));
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final ArgumentApplicationParser parser = new ArgumentApplicationParser(
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IOUtils.toString(SparkGraphImporterJob.class.getResourceAsStream(
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"/eu/dnetlib/dhp/graph/input_graph_parameters.json")));
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parser.parseArgument(args);
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try(SparkSession spark = getSparkSession(parser)) {
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@ -26,23 +28,24 @@ public class SparkGraphImporterJob {
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spark.sql(String.format("CREATE DATABASE IF NOT EXISTS %s", hiveDbName));
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// Read the input file and convert it into RDD of serializable object
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GraphMappingUtils.types.forEach((name, clazz) -> {
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spark.createDataset(sc.sequenceFile(inputPath + "/" + name, Text.class, Text.class)
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.map(s -> new ObjectMapper().readValue(s._2().toString(), clazz))
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GraphMappingUtils.types.forEach((name, clazz) -> spark.createDataset(sc.textFile(inputPath + "/" + name)
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.map(s -> new ObjectMapper().readValue(s, clazz))
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.rdd(), Encoders.bean(clazz))
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.write()
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.mode(SaveMode.Overwrite)
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.saveAsTable(hiveDbName + "." + name);
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});
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.saveAsTable(hiveDbName + "." + name));
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}
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}
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private static SparkSession getSparkSession(ArgumentApplicationParser parser) {
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SparkConf conf = new SparkConf();
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conf.set("hive.metastore.uris", parser.get("hive_metastore_uris"));
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return SparkSession
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.builder()
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.appName(SparkGraphImporterJob.class.getSimpleName())
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.master(parser.get("master"))
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.config("hive.metastore.uris", parser.get("hive_metastore_uris"))
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.config(conf)
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.enableHiveSupport()
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.getOrCreate();
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}
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