minor changes in comparators

dnet-pace-core/src/main/java/eu/dnetlib/pace/common/AbstractPaceFunctions.java

@@ -17,6 +17,7 @@ import java.io.IOException;
 import java.io.StringWriter;
 import java.text.Normalizer;
 import java.util.*;
+import java.util.regex.Matcher;
 import java.util.regex.Pattern;
 import java.util.stream.Collectors;
 
@@ -51,6 +52,8 @@ public abstract class AbstractPaceFunctions {
 
 	private Pattern numberPattern = Pattern.compile("-?\\d+(\\.\\d+)?");
 
+	private Pattern hexUnicodePattern = Pattern.compile("\\\\u(\\p{XDigit}{4})");
+
 	protected final static FieldList EMPTY_FIELD = new FieldListImpl();
 
 	protected String concat(final List<String> l) {
@@ -58,7 +61,7 @@ public abstract class AbstractPaceFunctions {
 	}
 
 	protected String cleanup(final String s) {
-		final String s0 = s.toLowerCase();
+		final String s0 = unicodeNormalization(s.toLowerCase());
 		final String s1 = fixAliases(s0);
 		final String s2 = nfd(s1);
 		final String s3 = s2.replaceAll("&ndash;", " ");
@@ -136,7 +139,7 @@ public abstract class AbstractPaceFunctions {
 	}
 
 	protected String normalize(final String s) {
-		return nfd(s)
+		return nfd(unicodeNormalization(s))
 				.toLowerCase()
 				// do not compact the regexes in a single expression, would cause StackOverflowError in case of large input strings
 				.replaceAll("[^ \\w]+", "")
@@ -151,6 +154,18 @@ public abstract class AbstractPaceFunctions {
 		return Normalizer.normalize(s, Normalizer.Form.NFD);
 	}
 
+	public String unicodeNormalization(final String s) {
+
+		Matcher m = hexUnicodePattern.matcher(s);
+		StringBuffer buf = new StringBuffer(s.length());
+		while (m.find()) {
+			String ch = String.valueOf((char) Integer.parseInt(m.group(1), 16));
+			m.appendReplacement(buf, Matcher.quoteReplacement(ch));
+		}
+		m.appendTail(buf);
+		return buf.toString();
+	}
+
 	protected String filterStopWords(final String s, final Set<String> stopwords) {
 		final StringTokenizer st = new StringTokenizer(s);
 		final StringBuilder sb = new StringBuilder();

dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/KeywordMatch.java

@@ -40,7 +40,7 @@ public class KeywordMatch extends AbstractComparator {
             return 1.0;
         else {
             if (codes1.isEmpty() ^ codes2.isEmpty())
-                return -1; //undefined if one of the two has no keywords
+                return -1.0; //undefined if one of the two has no keywords
             return commonElementsPercentage(codes1, codes2);
         }
     }

dnet-pace-core/src/main/java/eu/dnetlib/pace/tree/support/TreeNodeDef.java

@@ -51,7 +51,7 @@ public class TreeNodeDef implements Serializable {
                     fieldConf.getComparator() + " on " + fieldConf.getField() + " " + fields.indexOf(fieldConf),
                     new FieldStats(
                             weight,
-                            Double.parseDouble(fieldConf.getParams().getOrDefault("threshold", "0.5")),
+                            Double.parseDouble(fieldConf.getParams().getOrDefault("threshold", "-1.0")),
                             result,
                             fieldConf.isCountIfUndefined(),
                             doc1.getFieldMap().get(fieldConf.getField()),

dnet-pace-core/src/test/java/eu/dnetlib/pace/comparators/ComparatorTest.java

@@ -1,8 +1,10 @@
 package eu.dnetlib.pace.comparators;
 
 import eu.dnetlib.pace.clustering.NGramUtils;
+import eu.dnetlib.pace.model.MapDocument;
 import eu.dnetlib.pace.tree.*;
 import eu.dnetlib.pace.config.DedupConfig;
+import eu.dnetlib.pace.util.MapDocumentUtil;
 import org.junit.Before;
 import org.junit.Test;
 
@@ -30,7 +32,7 @@ public class ComparatorTest extends AbstractPaceFunctions {
 	@Test
 	public void testCleanForSorting() {
 		NGramUtils utils = new NGramUtils();
-		System.out.println("utils = " + utils.cleanupForOrdering("University of Pisa"));
+		System.out.println(utils.cleanupForOrdering("University of Pisa"));
 	}
 
 	@Test
@@ -111,10 +113,15 @@ public class ComparatorTest extends AbstractPaceFunctions {
 
         double result = jaroWinklerNormalizedName.distance("AT&T (United States)", "United States Military Academy", conf);
         System.out.println("result = " + result);
+
+		result = jaroWinklerNormalizedName.distance("NOAA - Servicio Meteorol\\u00f3gico Nacional", "NOAA - NWS", conf);
+		System.out.println("result = " + result);
+
+
 	}
 
 	@Test
-	public void jsonListMatchTest() {
+	public void jsonListMatchTest(){
 
 	}
 

dnet-pace-core/src/test/java/eu/dnetlib/pace/config/ConfigTest.java

@@ -7,6 +7,7 @@ import eu.dnetlib.pace.model.FieldList;
 import eu.dnetlib.pace.model.MapDocument;
 import eu.dnetlib.pace.tree.JsonListMatch;
 import eu.dnetlib.pace.util.MapDocumentUtil;
+import org.junit.Before;
 import org.junit.Test;
 
 import java.util.HashMap;
@@ -19,6 +20,15 @@ import static org.junit.Assert.assertNotNull;
 
 public class ConfigTest extends AbstractPaceTest {
 
+	private Map<String, String> params;
+
+	@Before
+	public void setup() {
+		params = new HashMap<>();
+		params.put("jpath_value", "$.value");
+		params.put("jpath_classid", "$.qualifier.classid");
+	}
+
 	@Test
 	public void dedupConfigSerializationTest() {
 		final DedupConfig cfgFromClasspath = DedupConfig.load(readFromClasspath("organization.current.conf.json"));
@@ -67,13 +77,18 @@ public class ConfigTest extends AbstractPaceTest {
 	@Test
 	public void asMapDocumentTest() {
 
-		DedupConfig dedupConf = DedupConfig.load(readFromClasspath("organization.current.conf.json"));
+		DedupConfig dedupConf = DedupConfig.load(readFromClasspath("publication.current.conf.json"));
 
-		final String json = readFromClasspath("organization.json");
+		final String json = readFromClasspath("publication.json");
 
 		final MapDocument mapDocument = MapDocumentUtil.asMapDocumentWithJPath(dedupConf, json);
 
 		System.out.println("mapDocument = " + mapDocument.getFieldMap());
+
+		JsonListMatch jsonListMatch = new JsonListMatch(params);
+
+		jsonListMatch.compare(mapDocument.getFieldMap().get("pid"), mapDocument.getFieldMap().get("pid"), null);
+
     }
 
     @Test

dnet-pace-core/src/test/resources/eu/dnetlib/pace/config/publication.current.conf.json

@@ -25,37 +25,13 @@
 		],
 		"includeChildren": "true",
 		"maxIterations": 20,
-		"idPath": "$.entity.id"
+		"idPath": "$.id"
 	},
 	"pace": {
-		"clustering": [
-			{
-				"name": "ngrampairs",
-				"fields": [
-					"title"
-				],
-				"params": {
-					"max": "1",
-					"ngramLen": "3"
-				}
-			},
-			{
-				"name": "suffixprefix",
-				"fields": [
-					"title"
-				],
-				"params": {
-					"max": "1",
-					"len": "3"
-				}
-			},
-			{
-				"name": "lowercase",
-				"fields": [
-					"doi"
-				],
-				"params": {}
-			}
+		"clustering" : [
+			{ "name" : "ngrampairs", "fields" : [ "title" ], "params" : { "max" : "1", "ngramLen" : "3"} },
+			{ "name" : "suffixprefix", "fields" : [ "title" ], "params" : { "max" : "1", "len" : "3" } },
+			{ "name" : "lowercase", "fields" : [ "doi" ], "params" : { } }
 		],
 		"decisionTree": {
 			"start": {
@@ -66,14 +42,13 @@
 						"weight": 1.0,
 						"countIfUndefined": "false",
 						"params": {
-							"threshold": "0.5",
 							"jpath_value": "$.value",
 							"jpath_classid": "$.qualifier.classid"
 						}
 					}
 				],
-				"threshold": 1.0,
-				"aggregation": "MAX",
+				"threshold": 0.5,
+				"aggregation": "AVG",
 				"positive": "MATCH",
 				"negative": "layer2",
 				"undefined": "layer2",
@@ -97,7 +72,7 @@
 					}
 				],
 				"threshold": 1.0,
-				"aggregation": "NC",
+				"aggregation": "AND",
 				"positive": "layer3",
 				"negative": "NO_MATCH",
 				"undefined": "layer3",
@@ -107,14 +82,14 @@
 				"fields": [
 					{
 						"field": "title",
-						"comparator": "LevensteinTitle",
+						"comparator": "levensteinTitle",
 						"weight": 1.0,
 						"countIfUndefined": "true",
 						"params": {}
 					}
 				],
 				"threshold": 0.99,
-				"aggregation": "SUM",
+				"aggregation": "AVG",
 				"positive": "MATCH",
 				"negative": "NO_MATCH",
 				"undefined": "NO_MATCH",
@@ -130,7 +105,7 @@
 			{
 				"name": "pid",
 				"type": "JSON",
-				"path": "$.pid[*]",
+				"path": "$.pid",
 				"overrideMatch": "true"
 			},
 			{