merge upstream

dhp-workflows/dhp-broker-events/pom.xml

@@ -59,7 +59,6 @@
 		<dependency>
 			<groupId>eu.dnetlib.dhp</groupId>
 			<artifactId>dnet-openaire-broker-common</artifactId>
-			<version>[3.0.0,)</version>
 		</dependency>
 
 	</dependencies>

dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/model/EventFactory.java

@@ -11,6 +11,8 @@ import org.apache.commons.lang3.StringUtils;
 import org.apache.commons.lang3.time.DateUtils;
 
 import eu.dnetlib.broker.objects.OaBrokerMainEntity;
+import eu.dnetlib.broker.objects.OaBrokerRelatedDatasource;
+import eu.dnetlib.dhp.broker.oa.util.BrokerConstants;
 import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
 
 public class EventFactory {
@@ -52,9 +54,11 @@ public class EventFactory {
 		final OaBrokerMainEntity source = updateInfo.getSource();
 		final OaBrokerMainEntity target = updateInfo.getTarget();
 
-		map.setTargetDatasourceId(target.getCollectedFromId());
+		final OaBrokerRelatedDatasource targetDs = updateInfo.getTargetDs();
-		map.setTargetDatasourceName(target.getCollectedFromName());
+
-		map.setTargetDatasourceType(target.getCollectedFromType());
+		map.setTargetDatasourceId(targetDs.getOpenaireId());
+		map.setTargetDatasourceName(targetDs.getName());
+		map.setTargetDatasourceType(targetDs.getType());
 
 		map.setTargetResultId(target.getOpenaireId());
 
@@ -73,11 +77,19 @@ public class EventFactory {
 
 		// PROVENANCE INFO
 		map.setTrust(updateInfo.getTrust());
-		map.setProvenanceDatasourceId(source.getCollectedFromId());
-		map.setProvenanceDatasourceName(source.getCollectedFromName());
-		map.setProvenanceDatasourceType(source.getCollectedFromType());
 		map.setProvenanceResultId(source.getOpenaireId());
 
+		source
+			.getDatasources()
+			.stream()
+			.filter(ds -> ds.getRelType().equals(BrokerConstants.COLLECTED_FROM_REL))
+			.findFirst()
+			.ifPresent(ds -> {
+				map.setProvenanceDatasourceId(ds.getOpenaireId());
+				map.setProvenanceDatasourceName(ds.getName());
+				map.setProvenanceDatasourceType(ds.getType());
+			});
+
 		return map;
 	}
 

dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/JoinStep0Job.java

@@ -17,8 +17,8 @@ import org.slf4j.LoggerFactory;
 import eu.dnetlib.broker.objects.OaBrokerMainEntity;
 import eu.dnetlib.dhp.application.ArgumentApplicationParser;
 import eu.dnetlib.dhp.broker.oa.util.ClusterUtils;
-import eu.dnetlib.dhp.broker.oa.util.aggregators.withRels.AddDatasourceTypeAggregator;
+import eu.dnetlib.dhp.broker.oa.util.aggregators.withRels.RelatedDatasource;
-import eu.dnetlib.dhp.broker.oa.util.aggregators.withRels.SimpleDatasourceInfo;
+import eu.dnetlib.dhp.broker.oa.util.aggregators.withRels.RelatedDatasourceAggregator;
 import scala.Tuple2;
 
 public class JoinStep0Job {
@@ -45,33 +45,33 @@ public class JoinStep0Job {
 		final String workingPath = parser.get("workingPath");
 		log.info("workingPath: {}", workingPath);
 
-		final String outputPath = workingPath + "/joinedEntities_step0";
+		final String joinedEntitiesPath = workingPath + "/joinedEntities_step0";
-		log.info("outputPath: {}", outputPath);
+		log.info("joinedEntitiesPath: {}", joinedEntitiesPath);
 
 		final SparkConf conf = new SparkConf();
 
 		runWithSparkSession(conf, isSparkSessionManaged, spark -> {
 
-			ClusterUtils.removeDir(spark, outputPath);
+			ClusterUtils.removeDir(spark, joinedEntitiesPath);
 
 			final LongAccumulator total = spark.sparkContext().longAccumulator("total_entities");
 
 			final Dataset<OaBrokerMainEntity> sources = ClusterUtils
 				.readPath(spark, workingPath + "/simpleEntities", OaBrokerMainEntity.class);
 
-			final Dataset<SimpleDatasourceInfo> datasources = ClusterUtils
+			final Dataset<RelatedDatasource> typedRels = ClusterUtils
-				.readPath(spark, workingPath + "/datasources", SimpleDatasourceInfo.class);
+				.readPath(spark, workingPath + "/relatedDatasources", RelatedDatasource.class);
 
-			final TypedColumn<Tuple2<OaBrokerMainEntity, SimpleDatasourceInfo>, OaBrokerMainEntity> aggr = new AddDatasourceTypeAggregator()
+			final TypedColumn<Tuple2<OaBrokerMainEntity, RelatedDatasource>, OaBrokerMainEntity> aggr = new RelatedDatasourceAggregator()
 				.toColumn();
 
 			final Dataset<OaBrokerMainEntity> dataset = sources
-				.joinWith(datasources, sources.col("collectedFromId").equalTo(datasources.col("id")), "inner")
+				.joinWith(typedRels, sources.col("openaireId").equalTo(typedRels.col("source")), "left_outer")
 				.groupByKey(t -> t._1.getOpenaireId(), Encoders.STRING())
 				.agg(aggr)
 				.map(t -> t._2, Encoders.bean(OaBrokerMainEntity.class));
 
-			ClusterUtils.save(dataset, outputPath, OaBrokerMainEntity.class, total);
+			ClusterUtils.save(dataset, joinedEntitiesPath, OaBrokerMainEntity.class, total);
 
 		});
 

dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/PrepareRelatedDatasourcesJob.java

@@ -9,14 +9,23 @@ import org.apache.commons.io.IOUtils;
 import org.apache.spark.SparkConf;
 import org.apache.spark.sql.Dataset;
 import org.apache.spark.sql.Encoders;
+import org.apache.spark.sql.SparkSession;
 import org.apache.spark.util.LongAccumulator;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 
+import eu.dnetlib.broker.objects.OaBrokerRelatedDatasource;
 import eu.dnetlib.dhp.application.ArgumentApplicationParser;
 import eu.dnetlib.dhp.broker.oa.util.ClusterUtils;
-import eu.dnetlib.dhp.broker.oa.util.aggregators.withRels.SimpleDatasourceInfo;
+import eu.dnetlib.dhp.broker.oa.util.ConversionUtils;
+import eu.dnetlib.dhp.broker.oa.util.DatasourceRelationsAccumulator;
+import eu.dnetlib.dhp.broker.oa.util.aggregators.withRels.RelatedDatasource;
 import eu.dnetlib.dhp.schema.oaf.Datasource;
+import eu.dnetlib.dhp.schema.oaf.OtherResearchProduct;
+import eu.dnetlib.dhp.schema.oaf.Publication;
+import eu.dnetlib.dhp.schema.oaf.Result;
+import eu.dnetlib.dhp.schema.oaf.Software;
+import scala.Tuple3;
 
 public class PrepareRelatedDatasourcesJob {
 
@@ -42,7 +51,7 @@ public class PrepareRelatedDatasourcesJob {
 		final String workingPath = parser.get("workingPath");
 		log.info("workingPath: {}", workingPath);
 
-		final String relsPath = workingPath + "/datasources";
+		final String relsPath = workingPath + "/relatedDatasources";
 		log.info("relsPath: {}", relsPath);
 
 		final SparkConf conf = new SparkConf();
@@ -53,16 +62,46 @@ public class PrepareRelatedDatasourcesJob {
 
 			final LongAccumulator total = spark.sparkContext().longAccumulator("total_datasources");
 
-			final Dataset<SimpleDatasourceInfo> dataset = ClusterUtils
+			final Dataset<Tuple3<String, String, String>> rels = prepareResultTuples(
-				.readPath(spark, graphPath + "/datasource", Datasource.class)
+				spark, graphPath, Publication.class)
-				.map(
+					.union(prepareResultTuples(spark, graphPath, eu.dnetlib.dhp.schema.oaf.Dataset.class))
-					ds -> new SimpleDatasourceInfo(ds.getId(), ds.getDatasourcetype().getClassid()),
+					.union(prepareResultTuples(spark, graphPath, Software.class))
-					Encoders.bean(SimpleDatasourceInfo.class));
+					.union(prepareResultTuples(spark, graphPath, OtherResearchProduct.class));
 
-			ClusterUtils.save(dataset, relsPath, SimpleDatasourceInfo.class, total);
+			final Dataset<OaBrokerRelatedDatasource> datasources = ClusterUtils
+				.readPath(spark, graphPath + "/datasource", Datasource.class)
+				.map(ConversionUtils::oafDatasourceToBrokerDatasource, Encoders.bean(OaBrokerRelatedDatasource.class));
+
+			final Dataset<RelatedDatasource> dataset = rels
+				.joinWith(datasources, datasources.col("openaireId").equalTo(rels.col("_2")), "inner")
+				.map(t -> {
+					final RelatedDatasource r = new RelatedDatasource();
+					r.setSource(t._1._1());
+					r.setRelDatasource(t._2);
+					r.getRelDatasource().setRelType(t._1._3());
+					return r;
+				}, Encoders.bean(RelatedDatasource.class));
+
+			ClusterUtils.save(dataset, relsPath, RelatedDatasource.class, total);
 
 		});
 
 	}
 
+	private static final Dataset<Tuple3<String, String, String>> prepareResultTuples(final SparkSession spark,
+		final String graphPath,
+		final Class<? extends Result> sourceClass) {
+
+		return ClusterUtils
+			.readPath(spark, graphPath + "/" + sourceClass.getSimpleName().toLowerCase(), sourceClass)
+			.filter(r -> !ClusterUtils.isDedupRoot(r.getId()))
+			.filter(r -> r.getDataInfo().getDeletedbyinference())
+			.map(
+				r -> DatasourceRelationsAccumulator.calculateTuples(r),
+				Encoders.bean(DatasourceRelationsAccumulator.class))
+			.flatMap(
+				acc -> acc.getRels().iterator(),
+				Encoders.tuple(Encoders.STRING(), Encoders.STRING(), Encoders.STRING()));
+	}
+
 }

dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/UpdateMatcher.java

@@ -15,6 +15,7 @@ import org.apache.commons.lang3.StringUtils;
 import org.apache.spark.util.LongAccumulator;
 
 import eu.dnetlib.broker.objects.OaBrokerMainEntity;
+import eu.dnetlib.broker.objects.OaBrokerRelatedDatasource;
 import eu.dnetlib.dhp.broker.model.Topic;
 import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
 
@@ -34,18 +35,19 @@ public abstract class UpdateMatcher<T> {
 		this.highlightToStringFunction = highlightToStringFunction;
 	}
 
-	public Collection<UpdateInfo<T>> searchUpdatesForRecord(final OaBrokerMainEntity res,
+	public Collection<UpdateInfo<T>> searchUpdatesForRecord(final OaBrokerMainEntity target,
+		final OaBrokerRelatedDatasource targetDs,
 		final Collection<OaBrokerMainEntity> others,
 		final Map<String, LongAccumulator> accumulators) {
 
 		final Map<String, UpdateInfo<T>> infoMap = new HashMap<>();
 
 		for (final OaBrokerMainEntity source : others) {
-			if (source != res) {
+			if (source != target) {
-				for (final T hl : findDifferences(source, res)) {
+				for (final T hl : findDifferences(source, target)) {
 					final Topic topic = getTopicFunction().apply(hl);
 					if (topic != null) {
-						final UpdateInfo<T> info = new UpdateInfo<>(topic, hl, source, res,
+						final UpdateInfo<T> info = new UpdateInfo<>(topic, hl, source, target, targetDs,
 							getCompileHighlightFunction(),
 							getHighlightToStringFunction());
 

dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/BrokerConstants.java

@@ -14,6 +14,10 @@ public class BrokerConstants {
 	public static final String OPEN_ACCESS = "OPEN";
 	public static final String IS_MERGED_IN_CLASS = "isMergedIn";
 
+	public static final String COLLECTED_FROM_REL = "collectedFrom";
+
+	public static final String HOSTED_BY_REL = "hostedBy";
+
 	public static final float MIN_TRUST = 0.25f;
 	public static final float MAX_TRUST = 1.00f;
 

dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/ConversionUtils.java

@@ -22,11 +22,13 @@ import eu.dnetlib.broker.objects.OaBrokerJournal;
 import eu.dnetlib.broker.objects.OaBrokerMainEntity;
 import eu.dnetlib.broker.objects.OaBrokerProject;
 import eu.dnetlib.broker.objects.OaBrokerRelatedDataset;
+import eu.dnetlib.broker.objects.OaBrokerRelatedDatasource;
 import eu.dnetlib.broker.objects.OaBrokerRelatedPublication;
 import eu.dnetlib.broker.objects.OaBrokerRelatedSoftware;
 import eu.dnetlib.broker.objects.OaBrokerTypedValue;
 import eu.dnetlib.dhp.schema.oaf.Author;
 import eu.dnetlib.dhp.schema.oaf.Dataset;
+import eu.dnetlib.dhp.schema.oaf.Datasource;
 import eu.dnetlib.dhp.schema.oaf.ExternalReference;
 import eu.dnetlib.dhp.schema.oaf.Field;
 import eu.dnetlib.dhp.schema.oaf.Instance;
@@ -119,8 +121,6 @@ public class ConversionUtils {
 		res
 			.setJournal(
 				result instanceof Publication ? oafJournalToBrokerJournal(((Publication) result).getJournal()) : null);
-		res.setCollectedFromId(mappedFirst(result.getCollectedfrom(), KeyValue::getKey));
-		res.setCollectedFromName(mappedFirst(result.getCollectedfrom(), KeyValue::getValue));
 		res.setPids(mappedList(result.getPid(), ConversionUtils::oafPidToBrokerPid));
 		res.setInstances(flatMappedList(result.getInstance(), ConversionUtils::oafInstanceToBrokerInstances));
 		res
@@ -223,6 +223,18 @@ public class ConversionUtils {
 		return res;
 	}
 
+	public static final OaBrokerRelatedDatasource oafDatasourceToBrokerDatasource(final Datasource ds) {
+		if (ds == null) {
+			return null;
+		}
+
+		final OaBrokerRelatedDatasource res = new OaBrokerRelatedDatasource();
+		res.setName(StringUtils.defaultIfBlank(fieldValue(ds.getOfficialname()), fieldValue(ds.getEnglishname())));
+		res.setOpenaireId(ds.getId());
+		res.setType(classId(ds.getDatasourcetype()));
+		return res;
+	}
+
 	private static String first(final List<String> list) {
 		return list != null && list.size() > 0 ? list.get(0) : null;
 	}

dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/DatasourceRelationsAccumulator.java

@@ -0,0 +1,68 @@
+
+package eu.dnetlib.dhp.broker.oa.util;
+
+import java.io.Serializable;
+import java.util.ArrayList;
+import java.util.List;
+import java.util.Objects;
+import java.util.Set;
+import java.util.stream.Collectors;
+
+import org.apache.commons.lang3.StringUtils;
+
+import eu.dnetlib.dhp.schema.oaf.Result;
+import scala.Tuple3;
+
+public class DatasourceRelationsAccumulator implements Serializable {
+
+	/**
+	 *
+	 */
+	private static final long serialVersionUID = 3256220670651218957L;
+
+	private List<Tuple3<String, String, String>> rels = new ArrayList<>();
+
+	public List<Tuple3<String, String, String>> getRels() {
+		return rels;
+	}
+
+	public void setRels(final List<Tuple3<String, String, String>> rels) {
+		this.rels = rels;
+	}
+
+	protected void addTuple(final Tuple3<String, String, String> t) {
+		rels.add(t);
+	}
+
+	public static final DatasourceRelationsAccumulator calculateTuples(final Result r) {
+
+		final Set<String> collectedFromSet = r
+			.getCollectedfrom()
+			.stream()
+			.map(kv -> kv.getKey())
+			.filter(StringUtils::isNotBlank)
+			.distinct()
+			.collect(Collectors.toSet());
+
+		final Set<String> hostedBySet = r
+			.getInstance()
+			.stream()
+			.map(i -> i.getHostedby())
+			.filter(Objects::nonNull)
+			.filter(kv -> !StringUtils.equalsIgnoreCase(kv.getValue(), "Unknown Repository"))
+			.map(kv -> kv.getKey())
+			.filter(StringUtils::isNotBlank)
+			.distinct()
+			.filter(id -> !collectedFromSet.contains(id))
+			.collect(Collectors.toSet());
+
+		final DatasourceRelationsAccumulator res = new DatasourceRelationsAccumulator();
+		collectedFromSet
+			.stream()
+			.map(s -> new Tuple3<>(r.getId(), s, BrokerConstants.COLLECTED_FROM_REL))
+			.forEach(res::addTuple);
+		hostedBySet.stream().map(s -> new Tuple3<>(r.getId(), s, BrokerConstants.HOSTED_BY_REL)).forEach(res::addTuple);
+		return res;
+	}
+
+}

dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/EventFinder.java

@@ -11,6 +11,7 @@ import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 
 import eu.dnetlib.broker.objects.OaBrokerMainEntity;
+import eu.dnetlib.broker.objects.OaBrokerRelatedDatasource;
 import eu.dnetlib.dhp.broker.model.EventFactory;
 import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher;
 import eu.dnetlib.dhp.broker.oa.matchers.relatedDatasets.EnrichMissingDatasetIsReferencedBy;
@@ -80,9 +81,11 @@ public class EventFinder {
 		final List<UpdateInfo<?>> list = new ArrayList<>();
 
 		for (final OaBrokerMainEntity target : results.getData()) {
-			if (verifyTarget(target, dsIdWhitelist, dsIdBlacklist, dsTypeWhitelist)) {
+			for (final OaBrokerRelatedDatasource targetDs : target.getDatasources()) {
+				if (verifyTarget(targetDs, dsIdWhitelist, dsIdBlacklist, dsTypeWhitelist)) {
 					for (final UpdateMatcher<?> matcher : matchers) {
-					list.addAll(matcher.searchUpdatesForRecord(target, results.getData(), accumulators));
+						list.addAll(matcher.searchUpdatesForRecord(target, targetDs, results.getData(), accumulators));
+					}
 				}
 			}
 		}
@@ -90,17 +93,17 @@ public class EventFinder {
 		return asEventGroup(list);
 	}
 
-	private static boolean verifyTarget(final OaBrokerMainEntity target,
+	private static boolean verifyTarget(final OaBrokerRelatedDatasource target,
 		final Set<String> dsIdWhitelist,
 		final Set<String> dsIdBlacklist,
 		final Set<String> dsTypeWhitelist) {
 
-		if (dsIdWhitelist.contains(target.getCollectedFromId())) {
+		if (dsIdWhitelist.contains(target.getOpenaireId())) {
 			return true;
-		} else if (dsIdBlacklist.contains(target.getCollectedFromId())) {
+		} else if (dsIdBlacklist.contains(target.getOpenaireId())) {
 			return false;
 		} else {
-			return dsTypeWhitelist.contains(target.getCollectedFromType());
+			return dsTypeWhitelist.contains(target.getType());
 		}
 	}
 

dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/UpdateInfo.java

@@ -8,6 +8,7 @@ import eu.dnetlib.broker.objects.OaBrokerEventPayload;
 import eu.dnetlib.broker.objects.OaBrokerInstance;
 import eu.dnetlib.broker.objects.OaBrokerMainEntity;
 import eu.dnetlib.broker.objects.OaBrokerProvenance;
+import eu.dnetlib.broker.objects.OaBrokerRelatedDatasource;
 import eu.dnetlib.dhp.broker.model.Topic;
 
 public final class UpdateInfo<T> {
@@ -20,6 +21,8 @@ public final class UpdateInfo<T> {
 
 	private final OaBrokerMainEntity target;
 
+	private final OaBrokerRelatedDatasource targetDs;
+
 	private final BiConsumer<OaBrokerMainEntity, T> compileHighlight;
 
 	private final Function<T, String> highlightToString;
@@ -28,12 +31,14 @@ public final class UpdateInfo<T> {
 
 	public UpdateInfo(final Topic topic, final T highlightValue, final OaBrokerMainEntity source,
 		final OaBrokerMainEntity target,
+		final OaBrokerRelatedDatasource targetDs,
 		final BiConsumer<OaBrokerMainEntity, T> compileHighlight,
 		final Function<T, String> highlightToString) {
 		this.topic = topic;
 		this.highlightValue = highlightValue;
 		this.source = source;
 		this.target = target;
+		this.targetDs = targetDs;
 		this.compileHighlight = compileHighlight;
 		this.highlightToString = highlightToString;
 		this.trust = TrustUtils.calculateTrust(source, target);
@@ -51,6 +56,10 @@ public final class UpdateInfo<T> {
 		return target;
 	}
 
+	public OaBrokerRelatedDatasource getTargetDs() {
+		return targetDs;
+	}
+
 	protected Topic getTopic() {
 		return topic;
 	}
@@ -75,8 +84,20 @@ public final class UpdateInfo<T> {
 		compileHighlight.accept(hl, getHighlightValue());
 
 		final String provId = getSource().getOpenaireId();
-		final String provRepo = getSource().getCollectedFromName();
+		final String provRepo = getSource()
-		final String provType = getSource().getCollectedFromType();
+			.getDatasources()
+			.stream()
+			.filter(ds -> ds.getRelType().equals(BrokerConstants.COLLECTED_FROM_REL))
+			.map(ds -> ds.getName())
+			.findFirst()
+			.orElse("");
+		final String provType = getSource()
+			.getDatasources()
+			.stream()
+			.filter(ds -> ds.getRelType().equals(BrokerConstants.COLLECTED_FROM_REL))
+			.map(ds -> ds.getType())
+			.findFirst()
+			.orElse("");
 
 		final String provUrl = getSource()
 			.getInstances()

dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/aggregators/withRels/RelatedDatasource.java

@@ -0,0 +1,42 @@
+
+package eu.dnetlib.dhp.broker.oa.util.aggregators.withRels;
+
+import java.io.Serializable;
+
+import eu.dnetlib.broker.objects.OaBrokerRelatedDatasource;
+
+public class RelatedDatasource implements Serializable {
+
+	/**
+	 *
+	 */
+	private static final long serialVersionUID = 3015550240920424010L;
+
+	private String source;
+	private OaBrokerRelatedDatasource relDatasource;
+
+	public RelatedDatasource() {
+	}
+
+	public RelatedDatasource(final String source, final OaBrokerRelatedDatasource relDatasource) {
+		this.source = source;
+		this.relDatasource = relDatasource;
+	}
+
+	public String getSource() {
+		return source;
+	}
+
+	public void setSource(final String source) {
+		this.source = source;
+	}
+
+	public OaBrokerRelatedDatasource getRelDatasource() {
+		return relDatasource;
+	}
+
+	public void setRelDatasource(final OaBrokerRelatedDatasource relDatasource) {
+		this.relDatasource = relDatasource;
+	}
+
+}

dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/aggregators/withRels/RelatedDatasourceAggregator.java

@@ -7,15 +7,16 @@ import org.apache.spark.sql.Encoders;
 import org.apache.spark.sql.expressions.Aggregator;
 
 import eu.dnetlib.broker.objects.OaBrokerMainEntity;
+import eu.dnetlib.dhp.broker.oa.util.BrokerConstants;
 import scala.Tuple2;
 
-public class AddDatasourceTypeAggregator
+public class RelatedDatasourceAggregator
-	extends Aggregator<Tuple2<OaBrokerMainEntity, SimpleDatasourceInfo>, OaBrokerMainEntity, OaBrokerMainEntity> {
+	extends Aggregator<Tuple2<OaBrokerMainEntity, RelatedDatasource>, OaBrokerMainEntity, OaBrokerMainEntity> {
 
 	/**
 	 *
 	 */
-	private static final long serialVersionUID = 8788588975496014728L;
+	private static final long serialVersionUID = -7212121913834713672L;
 
 	@Override
 	public OaBrokerMainEntity zero() {
@@ -29,10 +30,10 @@ public class AddDatasourceTypeAggregator
 
 	@Override
 	public OaBrokerMainEntity reduce(final OaBrokerMainEntity g,
-		final Tuple2<OaBrokerMainEntity, SimpleDatasourceInfo> t) {
+		final Tuple2<OaBrokerMainEntity, RelatedDatasource> t) {
 		final OaBrokerMainEntity res = StringUtils.isNotBlank(g.getOpenaireId()) ? g : t._1;
-		if (t._2 != null && StringUtils.isNotBlank(t._2.getType())) {
+		if (t._2 != null && res.getDatasources().size() < BrokerConstants.MAX_NUMBER_OF_RELS) {
-			res.setCollectedFromType(t._2.getType());
+			res.getDatasources().add(t._2.getRelDatasource());
 		}
 		return res;
 
@@ -40,7 +41,15 @@ public class AddDatasourceTypeAggregator
 
 	@Override
 	public OaBrokerMainEntity merge(final OaBrokerMainEntity g1, final OaBrokerMainEntity g2) {
-		if (StringUtils.isNotBlank(g1.getOpenaireId()) && StringUtils.isNotBlank(g1.getCollectedFromType())) {
+		if (StringUtils.isNotBlank(g1.getOpenaireId())) {
+			final int availables = BrokerConstants.MAX_NUMBER_OF_RELS - g1.getDatasources().size();
+			if (availables > 0) {
+				if (g2.getDatasources().size() <= availables) {
+					g1.getDatasources().addAll(g2.getDatasources());
+				} else {
+					g1.getDatasources().addAll(g2.getDatasources().subList(0, availables));
+				}
+			}
 			return g1;
 		} else {
 			return g2;
@@ -56,4 +65,5 @@ public class AddDatasourceTypeAggregator
 	public Encoder<OaBrokerMainEntity> outputEncoder() {
 		return Encoders.bean(OaBrokerMainEntity.class);
 	}
+
 }

dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/aggregators/withRels/SimpleDatasourceInfo.java

@@ -1,40 +0,0 @@
-
-package eu.dnetlib.dhp.broker.oa.util.aggregators.withRels;
-
-import java.io.Serializable;
-
-public class SimpleDatasourceInfo implements Serializable {
-
-	/**
-	 *
-	 */
-	private static final long serialVersionUID = 2996609859416024734L;
-
-	private String id;
-	private String type;
-
-	public SimpleDatasourceInfo() {
-	}
-
-	public SimpleDatasourceInfo(final String id, final String type) {
-		this.id = id;
-		this.type = type;
-	}
-
-	public String getId() {
-		return id;
-	}
-
-	public void setId(final String id) {
-		this.id = id;
-	}
-
-	public String getType() {
-		return type;
-	}
-
-	public void setType(final String type) {
-		this.type = type;
-	}
-
-}

dhp-workflows/dhp-broker-events/src/main/resources/eu/dnetlib/dhp/broker/oa/generate_all/oozie_app/workflow.xml

@@ -448,6 +448,30 @@
             <arg>--index</arg><arg>${esIndexName}</arg>
             <arg>--esHost</arg><arg>${esIndexHost}</arg>
         </spark>
+        <ok to="stats"/>
+        <error to="Kill"/>
+    </action>
+    
+    <action name="stats">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>GenerateStatsJob</name>
+            <class>eu.dnetlib.dhp.broker.oa.GenerateStatsJob</class>
+            <jar>dhp-broker-events-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-cores=${sparkExecutorCores}
+                --executor-memory=${sparkExecutorMemory}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.shuffle.partitions=3840
+            </spark-opts>
+            <arg>--graphPath</arg><arg>${graphInputPath}</arg>
+            <arg>--workingPath</arg><arg>${workingPath}</arg>
+        </spark>
         <ok to="End"/>
         <error to="Kill"/>
     </action>

dhp-workflows/dhp-broker-events/src/main/resources/eu/dnetlib/dhp/broker/oa/partial/oozie_app/workflow.xml

@@ -64,13 +64,208 @@
         </configuration>
     </global>
 
-    <start to="stats"/>
+    <start to="join_entities_step0"/>
 
     <kill name="Kill">
         <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
     </kill>
    
    
+   <action name="join_entities_step0">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>JoinStep0</name>
+            <class>eu.dnetlib.dhp.broker.oa.JoinStep0Job</class>
+            <jar>dhp-broker-events-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-cores=${sparkExecutorCores}
+                --executor-memory=${sparkExecutorMemory}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.shuffle.partitions=3840
+            </spark-opts>
+            <arg>--graphPath</arg><arg>${graphInputPath}</arg>
+            <arg>--workingPath</arg><arg>${workingPath}</arg>
+        </spark>
+        <ok to="join_entities_step1"/>
+        <error to="Kill"/>
+    </action>
+    
+ <action name="join_entities_step1">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>JoinStep1</name>
+            <class>eu.dnetlib.dhp.broker.oa.JoinStep1Job</class>
+            <jar>dhp-broker-events-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-cores=${sparkExecutorCores}
+                --executor-memory=${sparkExecutorMemory}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.shuffle.partitions=3840
+            </spark-opts>
+            <arg>--graphPath</arg><arg>${graphInputPath}</arg>
+            <arg>--workingPath</arg><arg>${workingPath}</arg>
+        </spark>
+        <ok to="join_entities_step2"/>
+        <error to="Kill"/>
+    </action>
+    
+    <action name="join_entities_step2">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>JoinStep2</name>
+            <class>eu.dnetlib.dhp.broker.oa.JoinStep2Job</class>
+            <jar>dhp-broker-events-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-cores=${sparkExecutorCores}
+                --executor-memory=${sparkExecutorMemory}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.shuffle.partitions=3840
+            </spark-opts>
+            <arg>--graphPath</arg><arg>${graphInputPath}</arg>
+            <arg>--workingPath</arg><arg>${workingPath}</arg>
+        </spark>
+        <ok to="join_entities_step3"/>
+        <error to="Kill"/>
+    </action>
+    
+    <action name="join_entities_step3">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>JoinStep3</name>
+            <class>eu.dnetlib.dhp.broker.oa.JoinStep3Job</class>
+            <jar>dhp-broker-events-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-cores=${sparkExecutorCores}
+                --executor-memory=${sparkExecutorMemory}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.shuffle.partitions=3840
+            </spark-opts>
+            <arg>--graphPath</arg><arg>${graphInputPath}</arg>
+            <arg>--workingPath</arg><arg>${workingPath}</arg>
+        </spark>
+        <ok to="join_entities_step4"/>
+        <error to="Kill"/>
+    </action>
+    
+    <action name="join_entities_step4">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>JoinStep4</name>
+            <class>eu.dnetlib.dhp.broker.oa.JoinStep4Job</class>
+            <jar>dhp-broker-events-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-cores=${sparkExecutorCores}
+                --executor-memory=${sparkExecutorMemory}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.shuffle.partitions=3840
+            </spark-opts>
+            <arg>--graphPath</arg><arg>${graphInputPath}</arg>
+            <arg>--workingPath</arg><arg>${workingPath}</arg>
+        </spark>
+        <ok to="prepare_groups"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="prepare_groups">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>PrepareGroupsJob</name>
+            <class>eu.dnetlib.dhp.broker.oa.PrepareGroupsJob</class>
+            <jar>dhp-broker-events-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-cores=${sparkExecutorCores}
+                --executor-memory=${sparkExecutorMemory}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.shuffle.partitions=3840
+            </spark-opts>
+            <arg>--graphPath</arg><arg>${graphInputPath}</arg>
+            <arg>--workingPath</arg><arg>${workingPath}</arg>
+        </spark>
+        <ok to="generate_events"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="generate_events">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>GenerateEventsJob</name>
+            <class>eu.dnetlib.dhp.broker.oa.GenerateEventsJob</class>
+            <jar>dhp-broker-events-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-cores=${sparkExecutorCores}
+                --executor-memory=${sparkExecutorMemory}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.shuffle.partitions=3840
+            </spark-opts>
+            <arg>--workingPath</arg><arg>${workingPath}</arg>
+			<arg>--datasourceIdWhitelist</arg><arg>${datasourceIdWhitelist}</arg>
+			<arg>--datasourceTypeWhitelist</arg><arg>${datasourceTypeWhitelist}</arg>
+			<arg>--datasourceIdBlacklist</arg><arg>${datasourceIdBlacklist}</arg>
+        </spark>
+        <ok to="index_es"/>
+        <error to="Kill"/>
+    </action>
+    
+     <action name="index_es">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>IndexOnESJob</name>
+            <class>eu.dnetlib.dhp.broker.oa.IndexOnESJob</class>
+            <jar>dhp-broker-events-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.dynamicAllocation.maxExecutors="8" 
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.shuffle.partitions=3840
+            </spark-opts>
+            <arg>--workingPath</arg><arg>${workingPath}</arg>
+            <arg>--index</arg><arg>${esIndexName}</arg>
+            <arg>--esHost</arg><arg>${esIndexHost}</arg>
+        </spark>
+        <ok to="stats"/>
+        <error to="Kill"/>
+       </action>
+    	
     	<action name="stats">
         <spark xmlns="uri:oozie:spark-action:0.2">
             <master>yarn</master>

dhp-workflows/dhp-broker-events/src/test/java/eu/dnetlib/dhp/broker/oa/matchers/UpdateMatcherTest.java

@@ -8,15 +8,23 @@ import java.util.Collection;
 
 import org.junit.jupiter.api.BeforeEach;
 import org.junit.jupiter.api.Test;
+import org.junit.jupiter.api.extension.ExtendWith;
+import org.mockito.Mock;
+import org.mockito.junit.jupiter.MockitoExtension;
 
 import eu.dnetlib.broker.objects.OaBrokerMainEntity;
+import eu.dnetlib.broker.objects.OaBrokerRelatedDatasource;
 import eu.dnetlib.dhp.broker.oa.matchers.simple.EnrichMissingPublicationDate;
 import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
 
+@ExtendWith(MockitoExtension.class)
 class UpdateMatcherTest {
 
 	UpdateMatcher<String> matcher = new EnrichMissingPublicationDate();
 
+	@Mock
+	private OaBrokerRelatedDatasource targetDs;
+
 	@BeforeEach
 	void setUp() throws Exception {
 	}
@@ -30,7 +38,7 @@ class UpdateMatcherTest {
 		final OaBrokerMainEntity p4 = new OaBrokerMainEntity();
 
 		final Collection<UpdateInfo<String>> list = matcher
-			.searchUpdatesForRecord(res, Arrays.asList(p1, p2, p3, p4), null);
+			.searchUpdatesForRecord(res, targetDs, Arrays.asList(p1, p2, p3, p4), null);
 
 		assertTrue(list.isEmpty());
 	}
@@ -46,7 +54,7 @@ class UpdateMatcherTest {
 		res.setPublicationdate("2018");
 
 		final Collection<UpdateInfo<String>> list = matcher
-			.searchUpdatesForRecord(res, Arrays.asList(p1, p2, p3, p4), null);
+			.searchUpdatesForRecord(res, targetDs, Arrays.asList(p1, p2, p3, p4), null);
 
 		assertTrue(list.isEmpty());
 	}
@@ -62,7 +70,7 @@ class UpdateMatcherTest {
 		p2.setPublicationdate("2018");
 
 		final Collection<UpdateInfo<String>> list = matcher
-			.searchUpdatesForRecord(res, Arrays.asList(p1, p2, p3, p4), null);
+			.searchUpdatesForRecord(res, targetDs, Arrays.asList(p1, p2, p3, p4), null);
 
 		assertTrue(list.size() == 1);
 	}
@@ -79,7 +87,7 @@ class UpdateMatcherTest {
 		p2.setPublicationdate("2018");
 
 		final Collection<UpdateInfo<String>> list = matcher
-			.searchUpdatesForRecord(res, Arrays.asList(p1, p2, p3, p4), null);
+			.searchUpdatesForRecord(res, targetDs, Arrays.asList(p1, p2, p3, p4), null);
 
 		assertTrue(list.isEmpty());
 	}
@@ -98,7 +106,7 @@ class UpdateMatcherTest {
 		p4.setPublicationdate("2018");
 
 		final Collection<UpdateInfo<String>> list = matcher
-			.searchUpdatesForRecord(res, Arrays.asList(p1, p2, p3, p4), null);
+			.searchUpdatesForRecord(res, targetDs, Arrays.asList(p1, p2, p3, p4), null);
 
 		assertTrue(list.isEmpty());
 	}
@@ -117,7 +125,7 @@ class UpdateMatcherTest {
 		p4.setPublicationdate("2018");
 
 		final Collection<UpdateInfo<String>> list = matcher
-			.searchUpdatesForRecord(res, Arrays.asList(p1, p2, p3, p4), null);
+			.searchUpdatesForRecord(res, targetDs, Arrays.asList(p1, p2, p3, p4), null);
 
 		assertTrue(list.size() == 1);
 	}

dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/AbstractSparkAction.java

@@ -28,6 +28,8 @@ import eu.dnetlib.pace.config.DedupConfig;
 
 abstract class AbstractSparkAction implements Serializable {
 
+	protected static final int NUM_PARTITIONS = 1000;
+
 	protected static final ObjectMapper OBJECT_MAPPER = new ObjectMapper()
 		.configure(DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES, false);
 

dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/DedupUtility.java

@@ -100,6 +100,11 @@ public class DedupUtility {
 		return String.format("%s/%s/%s_mergerel", basePath, actionSetId, entityType);
 	}
 
+	public static String createBlockStatsPath(
+		final String basePath, final String actionSetId, final String entityType) {
+		return String.format("%s/%s/%s_blockstats", basePath, actionSetId, entityType);
+	}
+
 	public static List<DedupConfig> getConfigurations(String isLookUpUrl, String orchestrator)
 		throws ISLookUpException, DocumentException {
 		final ISLookUpService isLookUpService = ISLookupClientFactory.getLookUpService(isLookUpUrl);

dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/Deduper.java

@@ -52,6 +52,7 @@ public class Deduper implements Serializable {
 					.collect(Collectors.toList())
 					.iterator())
 			.mapToPair(block -> new Tuple2<>(block.getKey(), block))
-			.reduceByKey((b1, b2) -> Block.from(b1, b2, of, maxQueueSize));
+			.reduceByKey((b1, b2) -> Block.from(b1, b2, of, maxQueueSize))
+			.filter(b -> b._2().getDocuments().size() > 1);
 	}
 }

dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/RelationAggregator.java

@@ -0,0 +1,57 @@
+
+package eu.dnetlib.dhp.oa.dedup;
+
+import java.util.Objects;
+
+import org.apache.spark.sql.Encoder;
+import org.apache.spark.sql.Encoders;
+import org.apache.spark.sql.expressions.Aggregator;
+
+import eu.dnetlib.dhp.schema.oaf.Relation;
+
+public class RelationAggregator extends Aggregator<Relation, Relation, Relation> {
+
+	private static Relation ZERO = new Relation();
+
+	@Override
+	public Relation zero() {
+		return ZERO;
+	}
+
+	@Override
+	public Relation reduce(Relation b, Relation a) {
+		return mergeRel(b, a);
+	}
+
+	@Override
+	public Relation merge(Relation b, Relation a) {
+		return mergeRel(b, a);
+	}
+
+	@Override
+	public Relation finish(Relation r) {
+		return r;
+	}
+
+	private Relation mergeRel(Relation b, Relation a) {
+		if (Objects.equals(b, ZERO)) {
+			return a;
+		}
+		if (Objects.equals(a, ZERO)) {
+			return b;
+		}
+
+		b.mergeFrom(a);
+		return b;
+	}
+
+	@Override
+	public Encoder<Relation> bufferEncoder() {
+		return Encoders.kryo(Relation.class);
+	}
+
+	@Override
+	public Encoder<Relation> outputEncoder() {
+		return Encoders.kryo(Relation.class);
+	}
+}

dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkBlockStats.java

@@ -0,0 +1,126 @@
+
+package eu.dnetlib.dhp.oa.dedup;
+
+import java.io.IOException;
+import java.util.Optional;
+
+import org.apache.commons.io.IOUtils;
+import org.apache.spark.SparkConf;
+import org.apache.spark.api.java.JavaPairRDD;
+import org.apache.spark.api.java.JavaRDD;
+import org.apache.spark.api.java.JavaSparkContext;
+import org.apache.spark.api.java.function.FilterFunction;
+import org.apache.spark.api.java.function.PairFunction;
+import org.apache.spark.sql.Encoders;
+import org.apache.spark.sql.SaveMode;
+import org.apache.spark.sql.SparkSession;
+import org.dom4j.DocumentException;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import eu.dnetlib.dhp.application.ArgumentApplicationParser;
+import eu.dnetlib.dhp.oa.dedup.model.Block;
+import eu.dnetlib.dhp.oa.dedup.model.BlockStats;
+import eu.dnetlib.dhp.utils.ISLookupClientFactory;
+import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
+import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
+import eu.dnetlib.pace.config.DedupConfig;
+import eu.dnetlib.pace.model.MapDocument;
+import eu.dnetlib.pace.util.MapDocumentUtil;
+import scala.Tuple2;
+
+public class SparkBlockStats extends AbstractSparkAction {
+
+	private static final Logger log = LoggerFactory.getLogger(SparkBlockStats.class);
+
+	public SparkBlockStats(ArgumentApplicationParser parser, SparkSession spark) {
+		super(parser, spark);
+	}
+
+	public static void main(String[] args) throws Exception {
+		ArgumentApplicationParser parser = new ArgumentApplicationParser(
+			IOUtils
+				.toString(
+					SparkBlockStats.class
+						.getResourceAsStream(
+							"/eu/dnetlib/dhp/oa/dedup/createBlockStats_parameters.json")));
+		parser.parseArgument(args);
+
+		SparkConf conf = new SparkConf();
+
+		new SparkBlockStats(parser, getSparkSession(conf))
+			.run(ISLookupClientFactory.getLookUpService(parser.get("isLookUpUrl")));
+	}
+
+	public Long computeComparisons(Long blockSize, Long slidingWindowSize) {
+
+		if (slidingWindowSize >= blockSize)
+			return (slidingWindowSize * (slidingWindowSize - 1)) / 2;
+		else {
+			return (blockSize - slidingWindowSize + 1) * (slidingWindowSize * (slidingWindowSize - 1)) / 2;
+		}
+	}
+
+	@Override
+	public void run(ISLookUpService isLookUpService)
+		throws DocumentException, IOException, ISLookUpException {
+
+		// read oozie parameters
+		final String graphBasePath = parser.get("graphBasePath");
+		final String isLookUpUrl = parser.get("isLookUpUrl");
+		final String actionSetId = parser.get("actionSetId");
+		final String workingPath = parser.get("workingPath");
+		final int numPartitions = Optional
+			.ofNullable(parser.get("numPartitions"))
+			.map(Integer::valueOf)
+			.orElse(NUM_PARTITIONS);
+
+		log.info("graphBasePath: '{}'", graphBasePath);
+		log.info("isLookUpUrl:   '{}'", isLookUpUrl);
+		log.info("actionSetId:   '{}'", actionSetId);
+		log.info("workingPath:   '{}'", workingPath);
+
+		// for each dedup configuration
+		for (DedupConfig dedupConf : getConfigurations(isLookUpService, actionSetId)) {
+
+			final String subEntity = dedupConf.getWf().getSubEntityValue();
+			log.info("Creating blockstats for: '{}'", subEntity);
+
+			final String outputPath = DedupUtility.createBlockStatsPath(workingPath, actionSetId, subEntity);
+			removeOutputDir(spark, outputPath);
+
+			JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
+
+			JavaPairRDD<String, MapDocument> mapDocuments = sc
+				.textFile(DedupUtility.createEntityPath(graphBasePath, subEntity))
+				.repartition(numPartitions)
+				.mapToPair(
+					(PairFunction<String, String, MapDocument>) s -> {
+						MapDocument d = MapDocumentUtil.asMapDocumentWithJPath(dedupConf, s);
+						return new Tuple2<>(d.getIdentifier(), d);
+					});
+
+			// create blocks for deduplication
+			JavaRDD<BlockStats> blockStats = Deduper
+				.createSortedBlocks(mapDocuments, dedupConf)
+				.repartition(numPartitions)
+				.map(b -> asBlockStats(dedupConf, b));
+
+			// save the blockstats in the workingdir
+			spark
+				.createDataset(blockStats.rdd(), Encoders.bean(BlockStats.class))
+				.write()
+				.mode(SaveMode.Overwrite)
+				.save(outputPath);
+		}
+	}
+
+	private BlockStats asBlockStats(DedupConfig dedupConf, Tuple2<String, Block> b) {
+		return new BlockStats(
+			b._1(),
+			(long) b._2().getDocuments().size(),
+			computeComparisons(
+				(long) b._2().getDocuments().size(), (long) dedupConf.getWf().getSlidingWindowSize()));
+	}
+
+}

dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkCreateMergeRels.java

@@ -5,11 +5,13 @@ import java.io.IOException;
 import java.util.ArrayList;
 import java.util.Iterator;
 import java.util.List;
+import java.util.Optional;
 
 import org.apache.commons.io.IOUtils;
 import org.apache.spark.SparkConf;
 import org.apache.spark.api.java.JavaPairRDD;
 import org.apache.spark.api.java.JavaSparkContext;
+import org.apache.spark.api.java.function.MapFunction;
 import org.apache.spark.api.java.function.PairFunction;
 import org.apache.spark.graphx.Edge;
 import org.apache.spark.rdd.RDD;
@@ -75,7 +77,11 @@ public class SparkCreateMergeRels extends AbstractSparkAction {
 		final String workingPath = parser.get("workingPath");
 		final String isLookUpUrl = parser.get("isLookUpUrl");
 		final String actionSetId = parser.get("actionSetId");
-
+		int cut = Optional
+			.ofNullable(parser.get("cutConnectedComponent"))
+			.map(Integer::valueOf)
+			.orElse(0);
+		log.info("connected component cut: '{}'", cut);
 		log.info("graphBasePath: '{}'", graphBasePath);
 		log.info("isLookUpUrl:   '{}'", isLookUpUrl);
 		log.info("actionSetId:   '{}'", actionSetId);
@@ -100,8 +106,10 @@ public class SparkCreateMergeRels extends AbstractSparkAction {
 
 			final RDD<Edge<String>> edgeRdd = spark
 				.read()
-				.load(DedupUtility.createSimRelPath(workingPath, actionSetId, subEntity))
+				.textFile(DedupUtility.createSimRelPath(workingPath, actionSetId, subEntity))
-				.as(Encoders.bean(Relation.class))
+				.map(
+					(MapFunction<String, Relation>) r -> OBJECT_MAPPER.readValue(r, Relation.class),
+					Encoders.bean(Relation.class))
 				.javaRDD()
 				.map(it -> new Edge<>(hash(it.getSource()), hash(it.getTarget()), it.getRelClass()))
 				.rdd();
@@ -109,7 +117,7 @@ public class SparkCreateMergeRels extends AbstractSparkAction {
 			final Dataset<Relation> mergeRels = spark
 				.createDataset(
 					GraphProcessor
-						.findCCs(vertexes.rdd(), edgeRdd, maxIterations)
+						.findCCs(vertexes.rdd(), edgeRdd, maxIterations, cut)
 						.toJavaRDD()
 						.filter(k -> k.getDocIds().size() > 1)
 						.flatMap(cc -> ccToMergeRel(cc, dedupConf))
@@ -117,6 +125,7 @@ public class SparkCreateMergeRels extends AbstractSparkAction {
 					Encoders.bean(Relation.class));
 
 			mergeRels.write().mode(SaveMode.Append).parquet(mergeRelPath);
+
 		}
 	}
 

dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkCreateSimRels.java

@@ -2,6 +2,7 @@
 package eu.dnetlib.dhp.oa.dedup;
 
 import java.io.IOException;
+import java.util.Optional;
 
 import org.apache.commons.io.IOUtils;
 import org.apache.spark.SparkConf;
@@ -48,13 +49,6 @@ public class SparkCreateSimRels extends AbstractSparkAction {
 		parser.parseArgument(args);
 
 		SparkConf conf = new SparkConf();
-		conf.set("spark.serializer", "org.apache.spark.serializer.KryoSerializer");
-		conf
-			.registerKryoClasses(
-				new Class[] {
-					MapDocument.class, FieldListImpl.class, FieldValueImpl.class, Block.class
-				});
-
 		new SparkCreateSimRels(parser, getSparkSession(conf))
 			.run(ISLookupClientFactory.getLookUpService(parser.get("isLookUpUrl")));
 	}
@@ -68,7 +62,12 @@ public class SparkCreateSimRels extends AbstractSparkAction {
 		final String isLookUpUrl = parser.get("isLookUpUrl");
 		final String actionSetId = parser.get("actionSetId");
 		final String workingPath = parser.get("workingPath");
+		final int numPartitions = Optional
+			.ofNullable(parser.get("numPartitions"))
+			.map(Integer::valueOf)
+			.orElse(NUM_PARTITIONS);
 
+		log.info("numPartitions: '{}'", numPartitions);
 		log.info("graphBasePath: '{}'", graphBasePath);
 		log.info("isLookUpUrl:   '{}'", isLookUpUrl);
 		log.info("actionSetId:   '{}'", actionSetId);
@@ -88,6 +87,7 @@ public class SparkCreateSimRels extends AbstractSparkAction {
 
 			JavaPairRDD<String, MapDocument> mapDocuments = sc
 				.textFile(DedupUtility.createEntityPath(graphBasePath, subEntity))
+				.repartition(numPartitions)
 				.mapToPair(
 					(PairFunction<String, String, MapDocument>) s -> {
 						MapDocument d = MapDocumentUtil.asMapDocumentWithJPath(dedupConf, s);
@@ -95,19 +95,17 @@ public class SparkCreateSimRels extends AbstractSparkAction {
 					});
 
 			// create blocks for deduplication
-			JavaPairRDD<String, Block> blocks = Deduper.createSortedBlocks(mapDocuments, dedupConf);
+			JavaPairRDD<String, Block> blocks = Deduper
+				.createSortedBlocks(mapDocuments, dedupConf)
+				.repartition(numPartitions);
 
 			// create relations by comparing only elements in the same group
-			JavaRDD<Relation> relations = Deduper
+			Deduper
 				.computeRelations(sc, blocks, dedupConf)
-				.map(t -> createSimRel(t._1(), t._2(), entity));
+				.map(t -> createSimRel(t._1(), t._2(), entity))
-
+				.repartition(numPartitions)
-			// save the simrel in the workingdir
+				.map(r -> OBJECT_MAPPER.writeValueAsString(r))
-			spark
+				.saveAsTextFile(outputPath);
-				.createDataset(relations.rdd(), Encoders.bean(Relation.class))
-				.write()
-				.mode(SaveMode.Append)
-				.save(outputPath);
 		}
 	}
 

dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkPropagateRelation.java

@@ -4,12 +4,16 @@ package eu.dnetlib.dhp.oa.dedup;
 import static org.apache.spark.sql.functions.col;
 
 import org.apache.commons.io.IOUtils;
+import org.apache.commons.lang3.StringUtils;
 import org.apache.spark.SparkConf;
+import org.apache.spark.api.java.function.FilterFunction;
 import org.apache.spark.api.java.function.MapFunction;
 import org.apache.spark.sql.*;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 
+import com.google.common.base.Joiner;
+
 import eu.dnetlib.dhp.application.ArgumentApplicationParser;
 import eu.dnetlib.dhp.schema.common.ModelSupport;
 import eu.dnetlib.dhp.schema.oaf.DataInfo;
@@ -95,7 +99,24 @@ public class SparkPropagateRelation extends AbstractSparkAction {
 			FieldType.TARGET,
 			getDeletedFn());
 
-		save(newRels.union(updated).union(mergeRels), outputRelationPath, SaveMode.Overwrite);
+		save(
+			distinctRelations(
+				newRels
+					.union(updated)
+					.union(mergeRels)
+					.map((MapFunction<Relation, Relation>) r -> r, Encoders.kryo(Relation.class))),
+			outputRelationPath, SaveMode.Overwrite);
+	}
+
+	private Dataset<Relation> distinctRelations(Dataset<Relation> rels) {
+		return rels
+			.filter(getRelationFilterFunction())
+			.groupByKey(
+				(MapFunction<Relation, String>) r -> String
+					.join(r.getSource(), r.getTarget(), r.getRelType(), r.getSubRelType(), r.getRelClass()),
+				Encoders.STRING())
+			.agg(new RelationAggregator().toColumn())
+			.map((MapFunction<Tuple2<String, Relation>, Relation>) t -> t._2(), Encoders.bean(Relation.class));
 	}
 
 	private static Dataset<Relation> processDataset(
@@ -112,6 +133,14 @@ public class SparkPropagateRelation extends AbstractSparkAction {
 			.map(mapFn, Encoders.bean(Relation.class));
 	}
 
+	private FilterFunction<Relation> getRelationFilterFunction() {
+		return (FilterFunction<Relation>) r -> StringUtils.isNotBlank(r.getSource()) ||
+			StringUtils.isNotBlank(r.getTarget()) ||
+			StringUtils.isNotBlank(r.getRelClass()) ||
+			StringUtils.isNotBlank(r.getSubRelType()) ||
+			StringUtils.isNotBlank(r.getRelClass());
+	}
+
 	private static MapFunction<String, Relation> patchRelFn() {
 		return value -> {
 			final Relation rel = OBJECT_MAPPER.readValue(value, Relation.class);

dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/graph/ConnectedComponent.java

@@ -4,6 +4,7 @@ package eu.dnetlib.dhp.oa.dedup.graph;
 import java.io.IOException;
 import java.io.Serializable;
 import java.util.Set;
+import java.util.stream.Collectors;
 
 import org.apache.commons.lang.StringUtils;
 import org.codehaus.jackson.annotate.JsonIgnore;
@@ -18,12 +19,17 @@ public class ConnectedComponent implements Serializable {
 	private Set<String> docIds;
 	private String ccId;
 
-	public ConnectedComponent() {
+	public ConnectedComponent(Set<String> docIds, final int cut) {
-	}
-
-	public ConnectedComponent(Set<String> docIds) {
 		this.docIds = docIds;
 		createID();
+		if (cut > 0 && docIds.size() > cut) {
+			this.docIds = docIds
+				.stream()
+				.filter(s -> !ccId.equalsIgnoreCase(s))
+				.limit(cut - 1)
+				.collect(Collectors.toSet());
+			this.docIds.add(ccId);
+		}
 	}
 
 	public String createID() {
@@ -41,6 +47,7 @@ public class ConnectedComponent implements Serializable {
 	public String getMin() {
 
 		final StringBuilder min = new StringBuilder();
+
 		docIds
 			.forEach(
 				i -> {

dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/graph/GraphProcessor.scala

@@ -7,7 +7,7 @@ import scala.collection.JavaConversions;
 
 object GraphProcessor {
 
-  def findCCs(vertexes: RDD[(VertexId, String)], edges: RDD[Edge[String]], maxIterations: Int): RDD[ConnectedComponent] = {
+  def findCCs(vertexes: RDD[(VertexId, String)], edges: RDD[Edge[String]], maxIterations: Int, cut:Int): RDD[ConnectedComponent] = {
     val graph: Graph[String, String] = Graph(vertexes, edges).partitionBy(PartitionStrategy.RandomVertexCut) //TODO remember to remove partitionby
     val cc = graph.connectedComponents(maxIterations).vertices
 
@@ -22,15 +22,15 @@ object GraphProcessor {
       }
     }
     val connectedComponents = joinResult.groupByKey()
-      .map[ConnectedComponent](cc => asConnectedComponent(cc))
+      .map[ConnectedComponent](cc => asConnectedComponent(cc, cut))
     connectedComponents
   }
 
 
 
-  def asConnectedComponent(group: (VertexId, Iterable[String])): ConnectedComponent = {
+  def asConnectedComponent(group: (VertexId, Iterable[String]), cut:Int): ConnectedComponent = {
     val docs = group._2.toSet[String]
-    val connectedComponent = new ConnectedComponent(JavaConversions.setAsJavaSet[String](docs));
+    val connectedComponent = new ConnectedComponent(JavaConversions.setAsJavaSet[String](docs), cut);
     connectedComponent
   }
 

dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/model/BlockStats.java

@@ -0,0 +1,45 @@
+
+package eu.dnetlib.dhp.oa.dedup.model;
+
+import java.io.Serializable;
+
+public class BlockStats implements Serializable {
+
+	private String key; // key of the block
+	private Long size; // number of elements in the block
+	private Long comparisons; // number of comparisons in the block
+
+	public BlockStats() {
+	}
+
+	public BlockStats(String key, Long size, Long comparisons) {
+		this.key = key;
+		this.size = size;
+		this.comparisons = comparisons;
+	}
+
+	public String getKey() {
+		return key;
+	}
+
+	public void setKey(String key) {
+		this.key = key;
+	}
+
+	public Long getSize() {
+		return size;
+	}
+
+	public void setSize(Long size) {
+		this.size = size;
+	}
+
+	public Long getComparisons() {
+		return comparisons;
+	}
+
+	public void setComparisons(Long comparisons) {
+		this.comparisons = comparisons;
+	}
+
+}

dhp-workflows/dhp-dedup-openaire/src/main/resources/eu/dnetlib/dhp/oa/dedup/createBlockStats_parameters.json

@@ -0,0 +1,32 @@
+[
+  {
+    "paramName": "la",
+    "paramLongName": "isLookUpUrl",
+    "paramDescription": "address for the LookUp",
+    "paramRequired": true
+  },
+  {
+    "paramName": "asi",
+    "paramLongName": "actionSetId",
+    "paramDescription": "action set identifier (name of the orchestrator)",
+    "paramRequired": true
+  },
+  {
+    "paramName": "i",
+    "paramLongName": "graphBasePath",
+    "paramDescription": "the base path of the raw graph",
+    "paramRequired": true
+  },
+  {
+    "paramName": "w",
+    "paramLongName": "workingPath",
+    "paramDescription": "path of the working directory",
+    "paramRequired": true
+  },
+  {
+    "paramName": "np",
+    "paramLongName": "numPartitions",
+    "paramDescription": "number of partitions for the similarity relations intermediate phases",
+    "paramRequired": false
+  }
+]

dhp-workflows/dhp-dedup-openaire/src/main/resources/eu/dnetlib/dhp/oa/dedup/createCC_parameters.json

@@ -17,6 +17,12 @@
     "paramDescription": "the url for the lookup service",
     "paramRequired": true
   },
+  {
+    "paramName": "cc",
+    "paramLongName": "cutConnectedComponent",
+    "paramDescription": "the number of maximum elements that belongs to a connected components",
+    "paramRequired": false
+  },
   {
     "paramName": "w",
     "paramLongName": "workingPath",

dhp-workflows/dhp-dedup-openaire/src/main/resources/eu/dnetlib/dhp/oa/dedup/createSimRels_parameters.json

@@ -22,5 +22,11 @@
     "paramLongName": "workingPath",
     "paramDescription": "path of the working directory",
     "paramRequired": true
+  },
+  {
+    "paramName": "np",
+    "paramLongName": "numPartitions",
+    "paramDescription": "number of partitions for the similarity relations intermediate phases",
+    "paramRequired": false
   }
 ]

dhp-workflows/dhp-dedup-openaire/src/main/resources/eu/dnetlib/dhp/oa/dedup/scan/oozie_app/workflow.xml

@@ -20,6 +20,10 @@
             <name>dedupGraphPath</name>
             <description>path for the output graph</description>
         </property>
+        <property>
+            <name>cutConnectedComponent</name>
+            <description>max number of elements in a connected component</description>
+        </property>
         <property>
             <name>sparkDriverMemory</name>
             <description>memory for driver process</description>
@@ -106,10 +110,11 @@
                 --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
                 --conf spark.sql.shuffle.partitions=3840
             </spark-opts>
-            <arg>--i</arg><arg>${graphBasePath}</arg>
+            <arg>--graphBasePath</arg><arg>${graphBasePath}</arg>
-            <arg>--la</arg><arg>${isLookUpUrl}</arg>
+            <arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
-            <arg>--asi</arg><arg>${actionSetId}</arg>
+            <arg>--actionSetId</arg><arg>${actionSetId}</arg>
-            <arg>--w</arg><arg>${workingPath}</arg>
+            <arg>--workingPath</arg><arg>${workingPath}</arg>
+            <arg>--numPartitions</arg><arg>8000</arg>
         </spark>
         <ok to="CreateMergeRel"/>
         <error to="Kill"/>
@@ -132,10 +137,11 @@
                 --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
                 --conf spark.sql.shuffle.partitions=3840
             </spark-opts>
-            <arg>--i</arg><arg>${graphBasePath}</arg>
+            <arg>--graphBasePath</arg><arg>${graphBasePath}</arg>
-            <arg>--w</arg><arg>${workingPath}</arg>
+            <arg>--workingPath</arg><arg>${workingPath}</arg>
-            <arg>--la</arg><arg>${isLookUpUrl}</arg>
+            <arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
-            <arg>--asi</arg><arg>${actionSetId}</arg>
+            <arg>--actionSetId</arg><arg>${actionSetId}</arg>
+            <arg>--cutConnectedComponent</arg><arg>${cutConnectedComponent}</arg>
         </spark>
         <ok to="CreateDedupRecord"/>
         <error to="Kill"/>
@@ -158,10 +164,10 @@
                 --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
                 --conf spark.sql.shuffle.partitions=3840
             </spark-opts>
-            <arg>--i</arg><arg>${graphBasePath}</arg>
+            <arg>--graphBasePath</arg><arg>${graphBasePath}</arg>
-            <arg>--w</arg><arg>${workingPath}</arg>
+            <arg>--workingPath</arg><arg>${workingPath}</arg>
-            <arg>--la</arg><arg>${isLookUpUrl}</arg>
+            <arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
-            <arg>--asi</arg><arg>${actionSetId}</arg>
+            <arg>--actionSetId</arg><arg>${actionSetId}</arg>
         </spark>
         <ok to="UpdateEntity"/>
         <error to="Kill"/>
@@ -184,9 +190,9 @@
                 --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
                 --conf spark.sql.shuffle.partitions=3840
             </spark-opts>
-            <arg>--i</arg><arg>${graphBasePath}</arg>
+            <arg>--graphBasePath</arg><arg>${graphBasePath}</arg>
-            <arg>--w</arg><arg>${workingPath}</arg>
+            <arg>--workingPath</arg><arg>${workingPath}</arg>
-            <arg>--o</arg><arg>${dedupGraphPath}</arg>
+            <arg>--dedupGraphPath</arg><arg>${dedupGraphPath}</arg>
         </spark>
         <ok to="copyRelations"/>
         <error to="Kill"/>

dhp-workflows/dhp-dedup-openaire/src/main/resources/eu/dnetlib/dhp/oa/dedup/statistics/oozie_app/config-default.xml

@@ -0,0 +1,18 @@
+<configuration>
+    <property>
+        <name>jobTracker</name>
+        <value>yarnRM</value>
+    </property>
+    <property>
+        <name>nameNode</name>
+        <value>hdfs://nameservice1</value>
+    </property>
+    <property>
+        <name>oozie.use.system.libpath</name>
+        <value>true</value>
+    </property>
+    <property>
+        <name>oozie.action.sharelib.for.spark</name>
+        <value>spark2</value>
+    </property>
+</configuration>

dhp-workflows/dhp-dedup-openaire/src/main/resources/eu/dnetlib/dhp/oa/dedup/statistics/oozie_app/workflow.xml

@@ -0,0 +1,108 @@
+<workflow-app name="Create dedup blocks" xmlns="uri:oozie:workflow:0.5">
+    <parameters>
+        <property>
+            <name>graphBasePath</name>
+            <description>the raw graph base path</description>
+        </property>
+        <property>
+            <name>isLookUpUrl</name>
+            <description>the address of the lookUp service</description>
+        </property>
+        <property>
+            <name>actionSetId</name>
+            <description>id of the actionSet</description>
+        </property>
+        <property>
+            <name>numPartitions</name>
+            <description>number of partitions for the similarity relations intermediate phases</description>
+        </property>
+        <property>
+            <name>sparkDriverMemory</name>
+            <description>memory for driver process</description>
+        </property>
+        <property>
+            <name>sparkExecutorMemory</name>
+            <description>memory for individual executor</description>
+        </property>
+        <property>
+            <name>sparkExecutorCores</name>
+            <description>number of cores used by single executor</description>
+        </property>
+        <property>
+            <name>oozieActionShareLibForSpark2</name>
+            <description>oozie action sharelib for spark 2.*</description>
+        </property>
+        <property>
+            <name>spark2ExtraListeners</name>
+            <value>com.cloudera.spark.lineage.NavigatorAppListener</value>
+            <description>spark 2.* extra listeners classname</description>
+        </property>
+        <property>
+            <name>spark2SqlQueryExecutionListeners</name>
+            <value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
+            <description>spark 2.* sql query execution listeners classname</description>
+        </property>
+        <property>
+            <name>spark2YarnHistoryServerAddress</name>
+            <description>spark 2.* yarn history server address</description>
+        </property>
+        <property>
+            <name>spark2EventLogDir</name>
+            <description>spark 2.* event log dir location</description>
+        </property>
+    </parameters>
+
+    <global>
+        <job-tracker>${jobTracker}</job-tracker>
+        <name-node>${nameNode}</name-node>
+        <configuration>
+            <property>
+                <name>mapreduce.job.queuename</name>
+                <value>${queueName}</value>
+            </property>
+            <property>
+                <name>oozie.launcher.mapred.job.queue.name</name>
+                <value>${oozieLauncherQueueName}</value>
+            </property>
+            <property>
+                <name>oozie.action.sharelib.for.spark</name>
+                <value>${oozieActionShareLibForSpark2}</value>
+            </property>
+        </configuration>
+    </global>
+
+    <start to="CreateBlockStats"/>
+
+    <kill name="Kill">
+        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
+    </kill>
+
+    <action name="CreateBlockStats">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>Create deduplication blocks</name>
+            <class>eu.dnetlib.dhp.oa.dedup.SparkBlockStats</class>
+            <jar>dhp-dedup-openaire-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.shuffle.partitions=3840
+            </spark-opts>
+            <arg>--graphBasePath</arg><arg>${graphBasePath}</arg>
+            <arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
+            <arg>--actionSetId</arg><arg>${actionSetId}</arg>
+            <arg>--workingPath</arg><arg>${workingDir}</arg>
+            <arg>--numPartitions</arg><arg>${numPartitions}</arg>
+        </spark>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
+
+    <end name="End"/>
+</workflow-app>

dhp-workflows/dhp-dedup-openaire/src/main/resources/eu/dnetlib/dhp/oa/dedup/updateEntity_parameters.json

@@ -1,17 +1,17 @@
 [
-{
+  {
     "paramName": "i",
     "paramLongName": "graphBasePath",
     "paramDescription": "the base path of raw graph",
     "paramRequired": true
-},
+  },
-{
+  {
     "paramName": "w",
     "paramLongName": "workingPath",
     "paramDescription": "the working directory path",
     "paramRequired": true
-},
+  },
-{
+  {
     "paramName": "o",
     "paramLongName": "dedupGraphPath",
     "paramDescription": "the path of the dedup graph",

dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/SparkDedupTest.java

@@ -3,6 +3,8 @@ package eu.dnetlib.dhp.oa.dedup;
 
 import static java.nio.file.Files.createTempDirectory;
 
+import static org.apache.spark.sql.functions.col;
+import static org.apache.spark.sql.functions.count;
 import static org.junit.jupiter.api.Assertions.assertEquals;
 import static org.mockito.Mockito.lenient;
 
@@ -11,6 +13,9 @@ import java.io.IOException;
 import java.io.Serializable;
 import java.net.URISyntaxException;
 import java.nio.file.Paths;
+import java.util.HashSet;
+import java.util.Set;
+import java.util.stream.Collectors;
 
 import org.apache.commons.io.FileUtils;
 import org.apache.commons.io.IOUtils;
@@ -18,6 +23,7 @@ import org.apache.spark.SparkConf;
 import org.apache.spark.api.java.JavaPairRDD;
 import org.apache.spark.api.java.JavaRDD;
 import org.apache.spark.api.java.JavaSparkContext;
+import org.apache.spark.api.java.function.FilterFunction;
 import org.apache.spark.api.java.function.MapFunction;
 import org.apache.spark.api.java.function.PairFunction;
 import org.apache.spark.sql.Dataset;
@@ -71,11 +77,13 @@ public class SparkDedupTest implements Serializable {
 		FileUtils.deleteDirectory(new File(testOutputBasePath));
 		FileUtils.deleteDirectory(new File(testDedupGraphBasePath));
 
+		final SparkConf conf = new SparkConf();
+		conf.set("spark.sql.shuffle.partitions", "200");
 		spark = SparkSession
 			.builder()
 			.appName(SparkDedupTest.class.getSimpleName())
 			.master("local[*]")
-			.config(new SparkConf())
+			.config(conf)
 			.getOrCreate();
 
 		jsc = JavaSparkContext.fromSparkContext(spark.sparkContext());
@@ -152,37 +160,42 @@ public class SparkDedupTest implements Serializable {
 		parser
 			.parseArgument(
 				new String[] {
-					"-i",
+					"-i", testGraphBasePath,
-					testGraphBasePath,
+					"-asi", testActionSetId,
-					"-asi",
+					"-la", "lookupurl",
-					testActionSetId,
+					"-w", testOutputBasePath,
-					"-la",
+					"-np", "50"
-					"lookupurl",
-					"-w",
-					testOutputBasePath
 				});
 
 		new SparkCreateSimRels(parser, spark).run(isLookUpService);
 
 		long orgs_simrel = spark
 			.read()
-			.load(testOutputBasePath + "/" + testActionSetId + "/organization_simrel")
+			.textFile(testOutputBasePath + "/" + testActionSetId + "/organization_simrel")
 			.count();
+
 		long pubs_simrel = spark
 			.read()
-			.load(testOutputBasePath + "/" + testActionSetId + "/publication_simrel")
+			.textFile(testOutputBasePath + "/" + testActionSetId + "/publication_simrel")
 			.count();
-		long sw_simrel = spark.read().load(testOutputBasePath + "/" + testActionSetId + "/software_simrel").count();
 
-		long ds_simrel = spark.read().load(testOutputBasePath + "/" + testActionSetId + "/dataset_simrel").count();
+		long sw_simrel = spark
+			.read()
+			.textFile(testOutputBasePath + "/" + testActionSetId + "/software_simrel")
+			.count();
+
+		long ds_simrel = spark
+			.read()
+			.textFile(testOutputBasePath + "/" + testActionSetId + "/dataset_simrel")
+			.count();
 
 		long orp_simrel = spark
 			.read()
-			.load(testOutputBasePath + "/" + testActionSetId + "/otherresearchproduct_simrel")
+			.textFile(testOutputBasePath + "/" + testActionSetId + "/otherresearchproduct_simrel")
 			.count();
 
 		assertEquals(3432, orgs_simrel);
-		assertEquals(7054, pubs_simrel);
+		assertEquals(7152, pubs_simrel);
 		assertEquals(344, sw_simrel);
 		assertEquals(458, ds_simrel);
 		assertEquals(6750, orp_simrel);
@@ -190,6 +203,101 @@ public class SparkDedupTest implements Serializable {
 
 	@Test
 	@Order(2)
+	public void cutMergeRelsTest() throws Exception {
+
+		ArgumentApplicationParser parser = new ArgumentApplicationParser(
+			IOUtils
+				.toString(
+					SparkCreateMergeRels.class
+						.getResourceAsStream(
+							"/eu/dnetlib/dhp/oa/dedup/createCC_parameters.json")));
+		parser
+			.parseArgument(
+				new String[] {
+					"-i",
+					testGraphBasePath,
+					"-asi",
+					testActionSetId,
+					"-la",
+					"lookupurl",
+					"-w",
+					testOutputBasePath,
+					"-cc",
+					"3"
+				});
+
+		new SparkCreateMergeRels(parser, spark).run(isLookUpService);
+
+		long orgs_mergerel = spark
+			.read()
+			.load(testOutputBasePath + "/" + testActionSetId + "/organization_mergerel")
+			.as(Encoders.bean(Relation.class))
+			.filter((FilterFunction<Relation>) r -> r.getRelClass().equalsIgnoreCase("merges"))
+			.groupBy("source")
+			.agg(count("target").alias("cnt"))
+			.select("source", "cnt")
+			.where("cnt > 3")
+			.count();
+
+		long pubs_mergerel = spark
+			.read()
+			.load(testOutputBasePath + "/" + testActionSetId + "/publication_mergerel")
+			.as(Encoders.bean(Relation.class))
+			.filter((FilterFunction<Relation>) r -> r.getRelClass().equalsIgnoreCase("merges"))
+			.groupBy("source")
+			.agg(count("target").alias("cnt"))
+			.select("source", "cnt")
+			.where("cnt > 3")
+			.count();
+		long sw_mergerel = spark
+			.read()
+			.load(testOutputBasePath + "/" + testActionSetId + "/software_mergerel")
+			.as(Encoders.bean(Relation.class))
+			.filter((FilterFunction<Relation>) r -> r.getRelClass().equalsIgnoreCase("merges"))
+			.groupBy("source")
+			.agg(count("target").alias("cnt"))
+			.select("source", "cnt")
+			.where("cnt > 3")
+			.count();
+
+		long ds_mergerel = spark
+			.read()
+			.load(testOutputBasePath + "/" + testActionSetId + "/dataset_mergerel")
+			.as(Encoders.bean(Relation.class))
+			.filter((FilterFunction<Relation>) r -> r.getRelClass().equalsIgnoreCase("merges"))
+			.groupBy("source")
+			.agg(count("target").alias("cnt"))
+			.select("source", "cnt")
+			.where("cnt > 3")
+			.count();
+
+		long orp_mergerel = spark
+			.read()
+			.load(testOutputBasePath + "/" + testActionSetId + "/otherresearchproduct_mergerel")
+			.as(Encoders.bean(Relation.class))
+			.filter((FilterFunction<Relation>) r -> r.getRelClass().equalsIgnoreCase("merges"))
+			.groupBy("source")
+			.agg(count("target").alias("cnt"))
+			.select("source", "cnt")
+			.where("cnt > 3")
+			.count();
+
+		assertEquals(0, orgs_mergerel);
+		assertEquals(0, pubs_mergerel);
+		assertEquals(0, sw_mergerel);
+		assertEquals(0, ds_mergerel);
+		assertEquals(0, orp_mergerel);
+
+		FileUtils.deleteDirectory(new File(testOutputBasePath + "/" + testActionSetId + "/organization_mergerel"));
+		FileUtils.deleteDirectory(new File(testOutputBasePath + "/" + testActionSetId + "/publication_mergerel"));
+		FileUtils.deleteDirectory(new File(testOutputBasePath + "/" + testActionSetId + "/software_mergerel"));
+		FileUtils.deleteDirectory(new File(testOutputBasePath + "/" + testActionSetId + "/dataset_mergerel"));
+		FileUtils
+			.deleteDirectory(new File(testOutputBasePath + "/" + testActionSetId + "/otherresearchproduct_mergerel"));
+	}
+
+	@Test
+	@Order(3)
 	public void createMergeRelsTest() throws Exception {
 
 		ArgumentApplicationParser parser = new ArgumentApplicationParser(
@@ -225,8 +333,10 @@ public class SparkDedupTest implements Serializable {
 			.read()
 			.load(testOutputBasePath + "/" + testActionSetId + "/software_mergerel")
 			.count();
-
+		long ds_mergerel = spark
-		long ds_mergerel = spark.read().load(testOutputBasePath + "/" + testActionSetId + "/dataset_mergerel").count();
+			.read()
+			.load(testOutputBasePath + "/" + testActionSetId + "/dataset_mergerel")
+			.count();
 
 		long orp_mergerel = spark
 			.read()
@@ -234,14 +344,14 @@ public class SparkDedupTest implements Serializable {
 			.count();
 
 		assertEquals(1276, orgs_mergerel);
-		assertEquals(1440, pubs_mergerel);
+		assertEquals(1442, pubs_mergerel);
 		assertEquals(288, sw_mergerel);
 		assertEquals(472, ds_mergerel);
 		assertEquals(718, orp_mergerel);
 	}
 
 	@Test
-	@Order(3)
+	@Order(4)
 	public void createDedupRecordTest() throws Exception {
 
 		ArgumentApplicationParser parser = new ArgumentApplicationParser(
@@ -288,7 +398,7 @@ public class SparkDedupTest implements Serializable {
 	}
 
 	@Test
-	@Order(4)
+	@Order(5)
 	public void updateEntityTest() throws Exception {
 
 		ArgumentApplicationParser parser = new ArgumentApplicationParser(
@@ -404,7 +514,7 @@ public class SparkDedupTest implements Serializable {
 	}
 
 	@Test
-	@Order(5)
+	@Order(6)
 	public void propagateRelationTest() throws Exception {
 
 		ArgumentApplicationParser parser = new ArgumentApplicationParser(
@@ -423,7 +533,7 @@ public class SparkDedupTest implements Serializable {
 
 		long relations = jsc.textFile(testDedupGraphBasePath + "/relation").count();
 
-		assertEquals(4971, relations);
+		assertEquals(4866, relations);
 
 		// check deletedbyinference
 		final Dataset<Relation> mergeRels = spark
@@ -454,7 +564,7 @@ public class SparkDedupTest implements Serializable {
 	}
 
 	@Test
-	@Order(6)
+	@Order(7)
 	public void testRelations() throws Exception {
 		testUniqueness("/eu/dnetlib/dhp/dedup/test/relation_1.json", 12, 10);
 		testUniqueness("/eu/dnetlib/dhp/dedup/test/relation_2.json", 10, 2);

dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/SparkStatsTest.java

@@ -0,0 +1,177 @@
+
+package eu.dnetlib.dhp.oa.dedup;
+
+import static java.nio.file.Files.createTempDirectory;
+
+import static org.junit.jupiter.api.Assertions.assertEquals;
+import static org.mockito.Mockito.lenient;
+
+import java.io.File;
+import java.io.IOException;
+import java.io.Serializable;
+import java.net.URISyntaxException;
+import java.nio.file.Paths;
+
+import org.apache.commons.io.FileUtils;
+import org.apache.commons.io.IOUtils;
+import org.apache.spark.SparkConf;
+import org.apache.spark.api.java.JavaSparkContext;
+import org.apache.spark.sql.SparkSession;
+import org.junit.jupiter.api.*;
+import org.junit.jupiter.api.extension.ExtendWith;
+import org.mockito.Mock;
+import org.mockito.Mockito;
+import org.mockito.junit.jupiter.MockitoExtension;
+
+import eu.dnetlib.dhp.application.ArgumentApplicationParser;
+import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
+import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
+
+@ExtendWith(MockitoExtension.class)
+public class SparkStatsTest implements Serializable {
+
+	@Mock(serializable = true)
+	ISLookUpService isLookUpService;
+
+	private static SparkSession spark;
+	private static JavaSparkContext jsc;
+
+	private static String testGraphBasePath;
+	private static String testOutputBasePath;
+	private static final String testActionSetId = "test-orchestrator";
+
+	@BeforeAll
+	public static void cleanUp() throws IOException, URISyntaxException {
+
+		testGraphBasePath = Paths
+			.get(SparkDedupTest.class.getResource("/eu/dnetlib/dhp/dedup/entities").toURI())
+			.toFile()
+			.getAbsolutePath();
+		testOutputBasePath = createTempDirectory(SparkDedupTest.class.getSimpleName() + "-")
+			.toAbsolutePath()
+			.toString();
+
+		FileUtils.deleteDirectory(new File(testOutputBasePath));
+
+		final SparkConf conf = new SparkConf();
+		conf.set("spark.sql.shuffle.partitions", "200");
+		spark = SparkSession
+			.builder()
+			.appName(SparkDedupTest.class.getSimpleName())
+			.master("local[*]")
+			.config(conf)
+			.getOrCreate();
+
+		jsc = JavaSparkContext.fromSparkContext(spark.sparkContext());
+	}
+
+	@BeforeEach
+	public void setUp() throws IOException, ISLookUpException {
+
+		lenient()
+			.when(isLookUpService.getResourceProfileByQuery(Mockito.contains(testActionSetId)))
+			.thenReturn(
+				IOUtils
+					.toString(
+						SparkDedupTest.class
+							.getResourceAsStream(
+								"/eu/dnetlib/dhp/dedup/profiles/mock_orchestrator.xml")));
+
+		lenient()
+			.when(isLookUpService.getResourceProfileByQuery(Mockito.contains("organization")))
+			.thenReturn(
+				IOUtils
+					.toString(
+						SparkDedupTest.class
+							.getResourceAsStream(
+								"/eu/dnetlib/dhp/dedup/conf/org.curr.conf.json")));
+
+		lenient()
+			.when(isLookUpService.getResourceProfileByQuery(Mockito.contains("publication")))
+			.thenReturn(
+				IOUtils
+					.toString(
+						SparkDedupTest.class
+							.getResourceAsStream(
+								"/eu/dnetlib/dhp/dedup/conf/pub.curr.conf.json")));
+
+		lenient()
+			.when(isLookUpService.getResourceProfileByQuery(Mockito.contains("software")))
+			.thenReturn(
+				IOUtils
+					.toString(
+						SparkDedupTest.class
+							.getResourceAsStream(
+								"/eu/dnetlib/dhp/dedup/conf/sw.curr.conf.json")));
+
+		lenient()
+			.when(isLookUpService.getResourceProfileByQuery(Mockito.contains("dataset")))
+			.thenReturn(
+				IOUtils
+					.toString(
+						SparkDedupTest.class
+							.getResourceAsStream(
+								"/eu/dnetlib/dhp/dedup/conf/ds.curr.conf.json")));
+
+		lenient()
+			.when(isLookUpService.getResourceProfileByQuery(Mockito.contains("otherresearchproduct")))
+			.thenReturn(
+				IOUtils
+					.toString(
+						SparkDedupTest.class
+							.getResourceAsStream(
+								"/eu/dnetlib/dhp/dedup/conf/orp.curr.conf.json")));
+	}
+
+	@Test
+	public void createBlockStatsTest() throws Exception {
+
+		ArgumentApplicationParser parser = new ArgumentApplicationParser(
+			IOUtils
+				.toString(
+					SparkCreateSimRels.class
+						.getResourceAsStream(
+							"/eu/dnetlib/dhp/oa/dedup/createBlockStats_parameters.json")));
+		parser
+			.parseArgument(
+				new String[] {
+					"-i", testGraphBasePath,
+					"-asi", testActionSetId,
+					"-la", "lookupurl",
+					"-w", testOutputBasePath
+				});
+
+		new SparkBlockStats(parser, spark).run(isLookUpService);
+
+		long orgs_blocks = spark
+			.read()
+			.textFile(testOutputBasePath + "/" + testActionSetId + "/organization_blockstats")
+			.count();
+
+		long pubs_blocks = spark
+			.read()
+			.textFile(testOutputBasePath + "/" + testActionSetId + "/publication_blockstats")
+			.count();
+
+		long sw_blocks = spark
+			.read()
+			.textFile(testOutputBasePath + "/" + testActionSetId + "/software_blockstats")
+			.count();
+
+		long ds_blocks = spark
+			.read()
+			.textFile(testOutputBasePath + "/" + testActionSetId + "/dataset_blockstats")
+			.count();
+
+		long orp_blocks = spark
+			.read()
+			.textFile(testOutputBasePath + "/" + testActionSetId + "/otherresearchproduct_blockstats")
+			.count();
+
+		assertEquals(121, orgs_blocks);
+		assertEquals(110, pubs_blocks);
+		assertEquals(21, sw_blocks);
+		assertEquals(67, ds_blocks);
+		assertEquals(55, orp_blocks);
+	}
+}

dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/conf/ds.curr.conf.json

@@ -6,10 +6,10 @@
     "subEntityType" : "resulttype",
     "subEntityValue" : "dataset",
     "orderField" : "title",
-    "queueMaxSize" : "800",
+    "queueMaxSize" : "100",
     "groupMaxSize" : "100",
     "maxChildren" : "100",
-    "slidingWindowSize" : "80",
+    "slidingWindowSize" : "100",
     "rootBuilder" : ["result", "resultProject_outcome_isProducedBy", "resultResult_publicationDataset_isRelatedTo", "resultResult_similarity_isAmongTopNSimilarDocuments", "resultResult_similarity_hasAmongTopNSimilarDocuments", "resultOrganization_affiliation_hasAuthorInstitution", "resultResult_part_hasPart", "resultResult_part_isPartOf", "resultResult_supplement_isSupplementTo", "resultResult_supplement_isSupplementedBy", "resultResult_version_isVersionOf" ],
     "includeChildren" : "true",
     "idPath" : "$.id",
@@ -17,7 +17,8 @@
   },
   "pace" : {
     "clustering" : [
-      { "name" : "wordssuffixprefix", "fields" : [ "title" ], "params" : { "max" : "2", "len" : "3" } },
+      { "name" : "ngrampairs", "fields" : [ "title" ], "params" : { "max" : "1", "ngramLen" : "3"} },
+      { "name" : "suffixprefix", "fields" : [ "title" ], "params" : { "max" : "1", "len" : "3" } },
       { "name" : "lowercase", "fields" : [ "doi" ], "params" : { } }
     ],
     "decisionTree" : {

dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/conf/orp.curr.conf.json

@@ -6,10 +6,10 @@
     "subEntityType" : "resulttype",
     "subEntityValue" : "otherresearchproduct",
     "orderField" : "title",
-    "queueMaxSize" : "800",
+    "queueMaxSize" : "100",
     "groupMaxSize" : "100",
     "maxChildren" : "100",
-    "slidingWindowSize" : "80",
+    "slidingWindowSize" : "100",
     "rootBuilder" : [ "result", "resultProject_outcome_isProducedBy", "resultResult_publicationDataset_isRelatedTo", "resultResult_similarity_isAmongTopNSimilarDocuments", "resultResult_similarity_hasAmongTopNSimilarDocuments", "resultOrganization_affiliation_hasAuthorInstitution", "resultResult_part_hasPart", "resultResult_part_isPartOf", "resultResult_supplement_isSupplementTo", "resultResult_supplement_isSupplementedBy", "resultResult_version_isVersionOf" ],
     "includeChildren" : "true",
     "idPath" : "$.id",
@@ -17,7 +17,8 @@
   },
   "pace" : {
     "clustering" : [
-      { "name" : "wordssuffixprefix", "fields" : [ "title" ], "params" : { "max" : "2", "len" : "3" } },
+      { "name" : "ngrampairs", "fields" : [ "title" ], "params" : { "max" : "1", "ngramLen" : "3"} },
+      { "name" : "suffixprefix", "fields" : [ "title" ], "params" : { "max" : "1", "len" : "3" } },
       { "name" : "lowercase", "fields" : [ "doi" ], "params" : { } }
     ],
     "decisionTree" : {

dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/conf/pub.curr.conf.json

@@ -6,10 +6,10 @@
     "subEntityType": "resulttype",
     "subEntityValue": "publication",
     "orderField": "title",
-    "queueMaxSize": "800",
+    "queueMaxSize": "100",
     "groupMaxSize": "100",
     "maxChildren": "100",
-    "slidingWindowSize": "80",
+    "slidingWindowSize": "100",
     "rootBuilder": [
       "result",
       "resultProject_outcome_isProducedBy",
@@ -29,7 +29,8 @@
   },
   "pace": {
     "clustering" : [
-      { "name" : "wordssuffixprefix", "fields" : [ "title" ], "params" : { "max" : "2", "len" : "3" } },
+      { "name" : "ngrampairs", "fields" : [ "title" ], "params" : { "max" : "1", "ngramLen" : "3"} },
+      { "name" : "suffixprefix", "fields" : [ "title" ], "params" : { "max" : "1", "len" : "3" } },
       { "name" : "lowercase", "fields" : [ "doi" ], "params" : { } }
     ],
     "decisionTree": {

dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/conf/sw.curr.conf.json

@@ -6,10 +6,10 @@
       "subEntityType" : "resulttype",
       "subEntityValue" : "software",
       "orderField" : "title",
-      "queueMaxSize" : "800",
+      "queueMaxSize" : "100",
       "groupMaxSize" : "100",
       "maxChildren" : "100",
-      "slidingWindowSize" : "80",
+      "slidingWindowSize" : "100",
       "rootBuilder" : [ "result", "resultProject_outcome_isProducedBy", "resultResult_publicationDataset_isRelatedTo", "resultResult_similarity_isAmongTopNSimilarDocuments", "resultResult_similarity_hasAmongTopNSimilarDocuments", "resultOrganization_affiliation_hasAuthorInstitution", "resultResult_part_hasPart", "resultResult_part_isPartOf", "resultResult_supplement_isSupplementTo", "resultResult_supplement_isSupplementedBy", "resultResult_version_isVersionOf" ],
       "includeChildren" : "true",
       "idPath" : "$.id",
@@ -17,8 +17,9 @@
     },
     "pace" : {
       "clustering" : [
-        { "name" : "wordssuffixprefix", "fields" : [ "title" ], "params" : { "max" : "2", "len" : "3" } },
+        { "name" : "ngrampairs", "fields" : [ "title" ], "params" : { "max" : "1", "ngramLen" : "3"} },
-        { "name" : "lowercase", "fields" : [ "doi", "url" ], "params" : { } }
+        { "name" : "suffixprefix", "fields" : [ "title" ], "params" : { "max" : "1", "len" : "3" } },
+        { "name" : "lowercase", "fields" : [ "doi" ], "params" : { } }
       ],
       "decisionTree": {
         "start": {

dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/CreateRelatedEntitiesJob_phase1.java

@@ -116,23 +116,10 @@ public class CreateRelatedEntitiesJob_phase1 {
 				Encoders.tuple(Encoders.STRING(), Encoders.kryo(Relation.class)))
 			.cache();
 
-		final String relatedEntityPath = outputPath + "_relatedEntity";
+		Dataset<Tuple2<String, RelatedEntity>> entities = readPathEntity(spark, inputEntityPath, clazz)
-		readPathEntity(spark, inputEntityPath, clazz)
 			.filter("dataInfo.invisible == false")
 			.map(
-				(MapFunction<E, RelatedEntity>) value -> asRelatedEntity(value, clazz),
+				(MapFunction<E, Tuple2<String, RelatedEntity>>) e -> new Tuple2<>(e.getId(), asRelatedEntity(e, clazz)),
-				Encoders.kryo(RelatedEntity.class))
-			.repartition(5000)
-			.write()
-			.mode(SaveMode.Overwrite)
-			.parquet(relatedEntityPath);
-
-		Dataset<Tuple2<String, RelatedEntity>> entities = spark
-			.read()
-			.load(relatedEntityPath)
-			.as(Encoders.kryo(RelatedEntity.class))
-			.map(
-				(MapFunction<RelatedEntity, Tuple2<String, RelatedEntity>>) e -> new Tuple2<>(e.getId(), e),
 				Encoders.tuple(Encoders.STRING(), Encoders.kryo(RelatedEntity.class)))
 			.cache();
 
@@ -184,13 +171,16 @@ public class CreateRelatedEntitiesJob_phase1 {
 				re.setDateofacceptance(getValue(result.getDateofacceptance()));
 				re.setPublisher(getValue(result.getPublisher()));
 				re.setResulttype(result.getResulttype());
+				if (Objects.nonNull(result.getInstance())) {
 					re
 						.setInstances(
 							result
 								.getInstance()
 								.stream()
+								.filter(Objects::nonNull)
 								.limit(ProvisionConstants.MAX_INSTANCES)
 								.collect(Collectors.toList()));
+				}
 
 				// TODO still to be mapped
 				// re.setCodeRepositoryUrl(j.read("$.coderepositoryurl"));

dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/utils/XmlRecordFactory.java

@@ -329,7 +329,7 @@ public class XmlRecordFactory implements Serializable {
 							.stream()
 							.filter(Objects::nonNull)
 							.map(c -> XmlSerializationUtils.asXmlElement("description", c.getValue()))
-							.collect(Collectors.toList()));
+							.collect(Collectors.toCollection(HashSet::new)));
 			}
 			if (r.getEmbargoenddate() != null) {
 				metadata
@@ -370,7 +370,7 @@ public class XmlRecordFactory implements Serializable {
 							.stream()
 							.filter(Objects::nonNull)
 							.map(c -> XmlSerializationUtils.asXmlElement("source", c.getValue()))
-							.collect(Collectors.toList()));
+							.collect(Collectors.toCollection(HashSet::new)));
 			}
 			if (r.getFormat() != null) {
 				metadata

dhp-workflows/dhp-graph-provision/src/main/resources/eu/dnetlib/dhp/oa/provision/oozie_app/workflow.xml

@@ -578,10 +578,18 @@
             <arg>--isLookupUrl</arg><arg>${isLookupUrl}</arg>
             <arg>--otherDsTypeId</arg><arg>${otherDsTypeId}</arg>
         </spark>
-        <ok to="to_solr_index"/>
+        <ok to="should_index"/>
         <error to="Kill"/>
     </action>
 
+    <decision name="should_index">
+        <switch>
+            <case to="to_solr_index">${wf:conf('shouldIndex') eq 'true'}</case>
+            <case to="End">${wf:conf('shouldIndex') eq 'false'}</case>
+            <default to="to_solr_index"/>
+        </switch>
+    </decision>
+
     <action name="to_solr_index">
         <spark xmlns="uri:oozie:spark-action:0.2">
             <master>yarn</master>

pom.xml

@@ -323,6 +323,12 @@
 				<version>[2.0.0,3.0.0)</version>
 			</dependency>
 
+			<dependency>
+				<groupId>eu.dnetlib.dhp</groupId>
+				<artifactId>dnet-openaire-broker-common</artifactId>
+				<version>${dnet.openaire.broker.common}</version>
+			</dependency>
+
             <dependency>
 				<groupId>org.apache.cxf</groupId>
 				<artifactId>cxf-rt-transports-http</artifactId>
@@ -618,5 +624,6 @@
 		<mockito-core.version>3.3.3</mockito-core.version>
 		<mongodb.driver.version>3.4.2</mongodb.driver.version>
 		<vtd.version>[2.12,3.0)</vtd.version>
+		<dnet.openaire.broker.common>3.1.0</dnet.openaire.broker.common>
 	</properties>
 </project>