forked from D-Net/dnet-hadoop
Merge branch 'beta' of code-repo.d4science.org:D-Net/dnet-hadoop into beta
This commit is contained in:
commit
3469cc2b1d
|
|
@ -70,7 +70,7 @@ case object Crossref2Oaf {
|
|||
"reference-book" -> "0002 Book",
|
||||
"monograph" -> "0002 Book",
|
||||
"journal-article" -> "0001 Article",
|
||||
"dissertation" -> "0006 Doctoral thesis",
|
||||
"dissertation" -> "0044 Thesis",
|
||||
"other" -> "0038 Other literature type",
|
||||
"peer-review" -> "0015 Review",
|
||||
"proceedings" -> "0004 Conference object",
|
||||
|
|
@ -206,11 +206,16 @@ case object Crossref2Oaf {
|
|||
else {
|
||||
instance.setDateofacceptance(asField(createdDate.getValue))
|
||||
}
|
||||
val s: String = (json \ "URL").extract[String]
|
||||
val links: List[String] = ((for {JString(url) <- json \ "link" \ "URL"} yield url) ::: List(s)).filter(p => p != null).distinct
|
||||
if (links.nonEmpty) {
|
||||
instance.setUrl(links.asJava)
|
||||
val s: List[String] = List("https://doi.org/" + doi)
|
||||
// val links: List[String] = ((for {JString(url) <- json \ "link" \ "URL"} yield url) ::: List(s)).filter(p => p != null && p.toLowerCase().contains(doi.toLowerCase())).distinct
|
||||
// if (links.nonEmpty) {
|
||||
// instance.setUrl(links.asJava)
|
||||
// }
|
||||
if(s.nonEmpty)
|
||||
{
|
||||
instance.setUrl(s.asJava)
|
||||
}
|
||||
|
||||
result.setInstance(List(instance).asJava)
|
||||
|
||||
//IMPORTANT
|
||||
|
|
|
|||
|
|
@ -111,26 +111,9 @@ object SparkProcessMAG {
|
|||
.map(item => ConversionUtil.updatePubsWithConferenceInfo(item))
|
||||
.write
|
||||
.mode(SaveMode.Overwrite)
|
||||
.save(s"$workingPath/merge_step_2_conference")
|
||||
|
||||
|
||||
magPubs= spark.read.load(s"$workingPath/merge_step_2_conference").as[Publication]
|
||||
.map(p => (ConversionUtil.extractMagIdentifier(p.getOriginalId.asScala), p)).as[(String, Publication)]
|
||||
|
||||
val paperUrlDataset = spark.read.load(s"$sourcePath/PaperUrls").as[MagPaperUrl].groupBy("PaperId").agg(collect_list(struct("sourceUrl")).as("instances")).as[MagUrl]
|
||||
|
||||
|
||||
logger.info("Phase 5) enrich publication with URL and Instances")
|
||||
magPubs.joinWith(paperUrlDataset, col("_1").equalTo(paperUrlDataset("PaperId")), "left")
|
||||
.map { a: ((String, Publication), MagUrl) => ConversionUtil.addInstances((a._1._2, a._2)) }
|
||||
.write.mode(SaveMode.Overwrite)
|
||||
.save(s"$workingPath/merge_step_3")
|
||||
|
||||
|
||||
// logger.info("Phase 6) Enrich Publication with description")
|
||||
// val pa = spark.read.load(s"${parser.get("sourcePath")}/PaperAbstractsInvertedIndex").as[MagPaperAbstract]
|
||||
// pa.map(ConversionUtil.transformPaperAbstract).write.mode(SaveMode.Overwrite).save(s"${parser.get("targetPath")}/PaperAbstract")
|
||||
|
||||
val paperAbstract = spark.read.load((s"$workingPath/PaperAbstract")).as[MagPaperAbstract]
|
||||
|
||||
|
||||
|
|
@ -162,12 +145,14 @@ object SparkProcessMAG {
|
|||
.write.mode(SaveMode.Overwrite)
|
||||
.save(s"$workingPath/mag_publication")
|
||||
|
||||
|
||||
val s:RDD[Publication] = spark.read.load(s"$workingPath/mag_publication").as[Publication]
|
||||
.map(p=>Tuple2(p.getId, p)).rdd.reduceByKey((a:Publication, b:Publication) => ConversionUtil.mergePublication(a,b))
|
||||
spark.read.load(s"$workingPath/mag_publication").as[Publication]
|
||||
.filter(p => p.getId == null)
|
||||
.groupByKey(p => p.getId)
|
||||
.reduceGroups((a:Publication, b:Publication) => ConversionUtil.mergePublication(a,b))
|
||||
.map(_._2)
|
||||
.write.mode(SaveMode.Overwrite).save(s"$targetPath/magPublication")
|
||||
|
||||
|
||||
spark.createDataset(s).as[Publication].write.mode(SaveMode.Overwrite).save(s"$targetPath/magPublication")
|
||||
|
||||
}
|
||||
}
|
||||
|
|
|
|||
|
|
@ -612,4 +612,26 @@ class CrossrefMappingTest {
|
|||
|
||||
}
|
||||
|
||||
@Test
|
||||
def testMultipleURLs() :Unit = {
|
||||
val json = Source.fromInputStream(getClass.getResourceAsStream("multiple_urls.json")).mkString
|
||||
|
||||
|
||||
assertNotNull(json)
|
||||
assertFalse(json.isEmpty);
|
||||
|
||||
val resultList: List[Oaf] = Crossref2Oaf.convert(json)
|
||||
|
||||
assertTrue(resultList.nonEmpty)
|
||||
|
||||
|
||||
val item : Result = resultList.filter(p => p.isInstanceOf[Result]).head.asInstanceOf[Result]
|
||||
|
||||
assertEquals(1, item.getInstance().size())
|
||||
assertEquals(1, item.getInstance().get(0).getUrl().size())
|
||||
assertEquals("https://doi.org/10.1016/j.jas.2019.105013", item.getInstance().get(0).getUrl().get(0))
|
||||
//println(mapper.writeValueAsString(item))
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
|||
|
|
@ -0,0 +1,614 @@
|
|||
|
||||
{
|
||||
"indexed": {
|
||||
"date-parts": [
|
||||
[
|
||||
2021,
|
||||
10,
|
||||
31
|
||||
]
|
||||
],
|
||||
"date-time": "2021-10-31T15:48:01Z",
|
||||
"timestamp": 1635695281393
|
||||
},
|
||||
"reference-count": 39,
|
||||
"publisher": "Elsevier BV",
|
||||
"license": [
|
||||
{
|
||||
"start": {
|
||||
"date-parts": [
|
||||
[
|
||||
2019,
|
||||
12,
|
||||
1
|
||||
]
|
||||
],
|
||||
"date-time": "2019-12-01T00:00:00Z",
|
||||
"timestamp": 1575158400000
|
||||
},
|
||||
"content-version": "tdm",
|
||||
"delay-in-days": 0,
|
||||
"URL": "https://www.elsevier.com/tdm/userlicense/1.0/"
|
||||
},
|
||||
{
|
||||
"start": {
|
||||
"date-parts": [
|
||||
[
|
||||
2019,
|
||||
9,
|
||||
13
|
||||
]
|
||||
],
|
||||
"date-time": "2019-09-13T00:00:00Z",
|
||||
"timestamp": 1568332800000
|
||||
},
|
||||
"content-version": "vor",
|
||||
"delay-in-days": 0,
|
||||
"URL": "http://creativecommons.org/licenses/by/4.0/"
|
||||
}
|
||||
],
|
||||
"funder": [
|
||||
{
|
||||
"DOI": "10.13039/100001182",
|
||||
"name": "INSTAP",
|
||||
"doi-asserted-by": "publisher"
|
||||
},
|
||||
{
|
||||
"DOI": "10.13039/100014440",
|
||||
"name": "Ministry of Science, Innovation and Universities",
|
||||
"doi-asserted-by": "publisher",
|
||||
"award": [
|
||||
"RYC-2016-19637"
|
||||
]
|
||||
},
|
||||
{
|
||||
"DOI": "10.13039/100010661",
|
||||
"name": "European Union’s Horizon 2020",
|
||||
"doi-asserted-by": "publisher",
|
||||
"award": [
|
||||
"746446"
|
||||
]
|
||||
}
|
||||
],
|
||||
"content-domain": {
|
||||
"domain": [
|
||||
"elsevier.com",
|
||||
"sciencedirect.com"
|
||||
],
|
||||
"crossmark-restriction": true
|
||||
},
|
||||
"short-container-title": [
|
||||
"Journal of Archaeological Science"
|
||||
],
|
||||
"published-print": {
|
||||
"date-parts": [
|
||||
[
|
||||
2019,
|
||||
12
|
||||
]
|
||||
]
|
||||
},
|
||||
"DOI": "10.1016/j.jas.2019.105013",
|
||||
"type": "journal-article",
|
||||
"created": {
|
||||
"date-parts": [
|
||||
[
|
||||
2019,
|
||||
9,
|
||||
25
|
||||
]
|
||||
],
|
||||
"date-time": "2019-09-25T20:05:08Z",
|
||||
"timestamp": 1569441908000
|
||||
},
|
||||
"page": "105013",
|
||||
"update-policy": "http://dx.doi.org/10.1016/elsevier_cm_policy",
|
||||
"source": "Crossref",
|
||||
"is-referenced-by-count": 21,
|
||||
"title": [
|
||||
"A brave new world for archaeological survey: Automated machine learning-based potsherd detection using high-resolution drone imagery"
|
||||
],
|
||||
"prefix": "10.1016",
|
||||
"volume": "112",
|
||||
"author": [
|
||||
{
|
||||
"given": "H.A.",
|
||||
"family": "Orengo",
|
||||
"sequence": "first",
|
||||
"affiliation": [
|
||||
|
||||
]
|
||||
},
|
||||
{
|
||||
"given": "A.",
|
||||
"family": "Garcia-Molsosa",
|
||||
"sequence": "additional",
|
||||
"affiliation": [
|
||||
|
||||
]
|
||||
}
|
||||
],
|
||||
"member": "78",
|
||||
"reference": [
|
||||
{
|
||||
"key": "10.1016/j.jas.2019.105013_bib1",
|
||||
"doi-asserted-by": "crossref",
|
||||
"first-page": "85",
|
||||
"DOI": "10.1080/17538947.2016.1250829",
|
||||
"article-title": "Remote sensing heritage in a petabyte-scale: satellite data and heritage Earth Engine© applications",
|
||||
"volume": "10",
|
||||
"author": "Agapiou",
|
||||
"year": "2017",
|
||||
"journal-title": "Int. J. Digit. Earth"
|
||||
},
|
||||
{
|
||||
"key": "10.1016/j.jas.2019.105013_bib2",
|
||||
"series-title": "Extracting Meaning from Ploughsoil Assemblages",
|
||||
"first-page": "1",
|
||||
"article-title": "Extracting meaning from ploughsoil assemblages: assessments of the past, strategies for the future",
|
||||
"author": "Alcock",
|
||||
"year": "2000"
|
||||
},
|
||||
{
|
||||
"key": "10.1016/j.jas.2019.105013_bib3",
|
||||
"series-title": "Side-by-Side Survey. Comparative Regional Studies in the Mediterranean World",
|
||||
"first-page": "1",
|
||||
"article-title": "Introduction",
|
||||
"author": "Alcock",
|
||||
"year": "2004"
|
||||
},
|
||||
{
|
||||
"key": "10.1016/j.jas.2019.105013_bib4",
|
||||
"doi-asserted-by": "crossref",
|
||||
"first-page": "93",
|
||||
"DOI": "10.1111/j.1538-4632.1995.tb00338.x",
|
||||
"article-title": "Local indicators of spatial association—LISA",
|
||||
"volume": "27",
|
||||
"author": "Anselin",
|
||||
"year": "1995",
|
||||
"journal-title": "Geogr. Anal."
|
||||
},
|
||||
{
|
||||
"key": "10.1016/j.jas.2019.105013_bib5",
|
||||
"series-title": "Archaeological Survey",
|
||||
"author": "Banning",
|
||||
"year": "2002"
|
||||
},
|
||||
{
|
||||
"issue": "1/2",
|
||||
"key": "10.1016/j.jas.2019.105013_bib6",
|
||||
"doi-asserted-by": "crossref",
|
||||
"first-page": "123",
|
||||
"DOI": "10.2307/3181488",
|
||||
"article-title": "GIS, archaeological survey and landscape archaeology on the island of Kythera, Greece",
|
||||
"volume": "29",
|
||||
"author": "Bevan",
|
||||
"year": "2004",
|
||||
"journal-title": "J. Field Archaeol."
|
||||
},
|
||||
{
|
||||
"issue": "1",
|
||||
"key": "10.1016/j.jas.2019.105013_bib8",
|
||||
"doi-asserted-by": "crossref",
|
||||
"first-page": "5",
|
||||
"DOI": "10.1023/A:1010933404324",
|
||||
"article-title": "Random forests",
|
||||
"volume": "45",
|
||||
"author": "Breiman",
|
||||
"year": "2001",
|
||||
"journal-title": "Mach. Learn."
|
||||
},
|
||||
{
|
||||
"key": "10.1016/j.jas.2019.105013_bib9",
|
||||
"series-title": "Sampling in Contemporary British Archaeology",
|
||||
"author": "Cherry",
|
||||
"year": "1978"
|
||||
},
|
||||
{
|
||||
"issue": "3",
|
||||
"key": "10.1016/j.jas.2019.105013_bib10",
|
||||
"doi-asserted-by": "crossref",
|
||||
"first-page": "273",
|
||||
"DOI": "10.1016/0734-189X(84)90197-X",
|
||||
"article-title": "Segmentation of a high-resolution urban scene using texture operators",
|
||||
"volume": "25",
|
||||
"author": "Conners",
|
||||
"year": "1984",
|
||||
"journal-title": "Comput. Vis. Graph Image Process"
|
||||
},
|
||||
{
|
||||
"key": "10.1016/j.jas.2019.105013_bib11",
|
||||
"first-page": "31",
|
||||
"article-title": "Old land surfaces and modern ploughsoil: implications of recent work at Maxey, Cambridgeshire",
|
||||
"volume": "2",
|
||||
"author": "Crowther",
|
||||
"year": "1983",
|
||||
"journal-title": "Scott. Archaeol. Rev."
|
||||
},
|
||||
{
|
||||
"key": "10.1016/j.jas.2019.105013_bib12",
|
||||
"series-title": "Settlement Pattern Studies in the Americas: Fifty Years since Virú",
|
||||
"first-page": "203",
|
||||
"article-title": "Conclusions: the settlement pattern concept from an Americanist perspective",
|
||||
"author": "Fish",
|
||||
"year": "1999"
|
||||
},
|
||||
{
|
||||
"key": "10.1016/j.jas.2019.105013_bib13",
|
||||
"doi-asserted-by": "crossref",
|
||||
"first-page": "21",
|
||||
"DOI": "10.3390/geosciences9010021",
|
||||
"article-title": "Remote sensing and historical morphodynamics of alluvial plains. The 1909 indus flood and the city of Dera Gazhi Khan (province of Punjab, Pakistan)",
|
||||
"volume": "9",
|
||||
"author": "Garcia",
|
||||
"year": "2019",
|
||||
"journal-title": "Geosciences"
|
||||
},
|
||||
{
|
||||
"key": "10.1016/j.jas.2019.105013_bib14",
|
||||
"unstructured": "Georgiadis, M.; Garcia-Molsosa, A.; Orengo, H.A.; Kefalidou, E. and Kallintzi, K. In Preparation. APAX Project 2015-2018: A Preliminary Report. (Hesperia)."
|
||||
},
|
||||
{
|
||||
"key": "10.1016/j.jas.2019.105013_bib15",
|
||||
"series-title": "Geographical Information Systems and Landscape Archaeology",
|
||||
"first-page": "35",
|
||||
"article-title": "Regional survey and GIS: the boeotia project",
|
||||
"author": "Gillings",
|
||||
"year": "1999"
|
||||
},
|
||||
{
|
||||
"key": "10.1016/j.jas.2019.105013_bib16",
|
||||
"doi-asserted-by": "crossref",
|
||||
"first-page": "18",
|
||||
"DOI": "10.1016/j.rse.2017.06.031",
|
||||
"article-title": "Google Earth engine: planetary-scale geospatial analysis for everyone",
|
||||
"volume": "202",
|
||||
"author": "Gorelick",
|
||||
"year": "2017",
|
||||
"journal-title": "Remote Sens. Environ."
|
||||
},
|
||||
{
|
||||
"issue": "107",
|
||||
"key": "10.1016/j.jas.2019.105013_bib17",
|
||||
"doi-asserted-by": "crossref",
|
||||
"first-page": "177",
|
||||
"DOI": "10.1111/j.0031-868X.2004.00278.x",
|
||||
"article-title": "Photogrammetric reconstruction of the great buddha of Bamiyan, Afghanistan",
|
||||
"volume": "19",
|
||||
"author": "Grün",
|
||||
"year": "2004",
|
||||
"journal-title": "Photogramm. Rec."
|
||||
},
|
||||
{
|
||||
"issue": "6",
|
||||
"key": "10.1016/j.jas.2019.105013_bib18",
|
||||
"doi-asserted-by": "crossref",
|
||||
"first-page": "610",
|
||||
"DOI": "10.1109/TSMC.1973.4309314",
|
||||
"article-title": "Textural features for image classification",
|
||||
"author": "Haralick",
|
||||
"year": "1973",
|
||||
"journal-title": "IEEE Trans. Syst., Man, Cybernet., SMC-3"
|
||||
},
|
||||
{
|
||||
"key": "10.1016/j.jas.2019.105013_bib19",
|
||||
"doi-asserted-by": "crossref",
|
||||
"first-page": "76",
|
||||
"DOI": "10.1558/jmea.v14i1.76",
|
||||
"article-title": "Excavating to excess? Implications of the last decade of archaeology in Israel",
|
||||
"volume": "14",
|
||||
"author": "Kletter",
|
||||
"year": "2001",
|
||||
"journal-title": "J. Mediterr. Archaeol."
|
||||
},
|
||||
{
|
||||
"key": "10.1016/j.jas.2019.105013_bib20",
|
||||
"first-page": "299",
|
||||
"article-title": "Testing Google Earth Engine for the automatic identification and vectorization of archaeological features: a case study from Faynan, Jordan",
|
||||
"volume": "15",
|
||||
"author": "Liss",
|
||||
"year": "2017",
|
||||
"journal-title": "J. Archaeol. Sci.: Report"
|
||||
},
|
||||
{
|
||||
"key": "10.1016/j.jas.2019.105013_bib21",
|
||||
"series-title": "Geographical Information Systems and Landscape Archaeology",
|
||||
"first-page": "55",
|
||||
"article-title": "Towards a methodology for modelling surface survey data: the sangro valley project",
|
||||
"author": "Lock",
|
||||
"year": "1999"
|
||||
},
|
||||
{
|
||||
"key": "10.1016/j.jas.2019.105013_bib22",
|
||||
"series-title": "Extracting Meaning from Ploughsoil Assemblages",
|
||||
"first-page": "5",
|
||||
"article-title": "Methods of collection recording and quantification",
|
||||
"author": "Mattingly",
|
||||
"year": "2000"
|
||||
},
|
||||
{
|
||||
"issue": "14",
|
||||
"key": "10.1016/j.jas.2019.105013_bib23",
|
||||
"doi-asserted-by": "crossref",
|
||||
"first-page": "E778",
|
||||
"DOI": "10.1073/pnas.1115472109",
|
||||
"article-title": "Mapping patterns of long-term settlement in Northern Mesopotamia at a large scale",
|
||||
"volume": "109",
|
||||
"author": "Menze",
|
||||
"year": "2012",
|
||||
"journal-title": "Proc. Natl. Acad. Sci."
|
||||
},
|
||||
{
|
||||
"key": "10.1016/j.jas.2019.105013_bib24",
|
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