diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/GenerateEventsApplication.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/GenerateEventsApplication.java index fa425a181..d5e577972 100644 --- a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/GenerateEventsApplication.java +++ b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/GenerateEventsApplication.java @@ -30,30 +30,30 @@ import com.fasterxml.jackson.databind.ObjectMapper; import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.broker.model.Event; import eu.dnetlib.dhp.broker.model.EventFactory; -import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingAbstract; -import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingAuthorOrcid; -import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingDatasetIsReferencedBy; -import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingDatasetIsRelatedTo; -import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingDatasetIsSupplementedBy; -import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingDatasetIsSupplementedTo; -import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingDatasetReferences; -import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingOpenAccess; -import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingPid; -import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingProject; -import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingPublicationDate; -import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingPublicationIsReferencedBy; -import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingPublicationIsRelatedTo; -import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingPublicationIsSupplementedBy; -import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingPublicationIsSupplementedTo; -import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingPublicationReferences; -import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingSoftware; -import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingSubject; -import eu.dnetlib.dhp.broker.oa.matchers.EnrichMoreOpenAccess; -import eu.dnetlib.dhp.broker.oa.matchers.EnrichMorePid; -import eu.dnetlib.dhp.broker.oa.matchers.EnrichMoreProject; -import eu.dnetlib.dhp.broker.oa.matchers.EnrichMoreSoftware; -import eu.dnetlib.dhp.broker.oa.matchers.EnrichMoreSubject; import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher; +import eu.dnetlib.dhp.broker.oa.matchers.relatedDatasets.EnrichMissingDatasetIsReferencedBy; +import eu.dnetlib.dhp.broker.oa.matchers.relatedDatasets.EnrichMissingDatasetIsRelatedTo; +import eu.dnetlib.dhp.broker.oa.matchers.relatedDatasets.EnrichMissingDatasetIsSupplementedBy; +import eu.dnetlib.dhp.broker.oa.matchers.relatedDatasets.EnrichMissingDatasetIsSupplementedTo; +import eu.dnetlib.dhp.broker.oa.matchers.relatedDatasets.EnrichMissingDatasetReferences; +import eu.dnetlib.dhp.broker.oa.matchers.relatedProjects.EnrichMissingProject; +import eu.dnetlib.dhp.broker.oa.matchers.relatedProjects.EnrichMoreProject; +import eu.dnetlib.dhp.broker.oa.matchers.relatedPublications.EnrichMissingPublicationIsReferencedBy; +import eu.dnetlib.dhp.broker.oa.matchers.relatedPublications.EnrichMissingPublicationIsRelatedTo; +import eu.dnetlib.dhp.broker.oa.matchers.relatedPublications.EnrichMissingPublicationIsSupplementedBy; +import eu.dnetlib.dhp.broker.oa.matchers.relatedPublications.EnrichMissingPublicationIsSupplementedTo; +import eu.dnetlib.dhp.broker.oa.matchers.relatedPublications.EnrichMissingPublicationReferences; +import eu.dnetlib.dhp.broker.oa.matchers.simple.EnrichMissingAbstract; +import eu.dnetlib.dhp.broker.oa.matchers.simple.EnrichMissingAuthorOrcid; +import eu.dnetlib.dhp.broker.oa.matchers.simple.EnrichMissingOpenAccess; +import eu.dnetlib.dhp.broker.oa.matchers.simple.EnrichMissingPid; +import eu.dnetlib.dhp.broker.oa.matchers.simple.EnrichMissingPublicationDate; +import eu.dnetlib.dhp.broker.oa.matchers.simple.EnrichMissingSoftware; +import eu.dnetlib.dhp.broker.oa.matchers.simple.EnrichMissingSubject; +import eu.dnetlib.dhp.broker.oa.matchers.simple.EnrichMoreOpenAccess; +import eu.dnetlib.dhp.broker.oa.matchers.simple.EnrichMorePid; +import eu.dnetlib.dhp.broker.oa.matchers.simple.EnrichMoreSoftware; +import eu.dnetlib.dhp.broker.oa.matchers.simple.EnrichMoreSubject; import eu.dnetlib.dhp.broker.oa.util.BrokerConstants; import eu.dnetlib.dhp.broker.oa.util.UpdateInfo; import eu.dnetlib.dhp.common.HdfsSupport; diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingDatasetIsReferencedBy.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingDatasetIsReferencedBy.java deleted file mode 100644 index 3b9326fef..000000000 --- a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingDatasetIsReferencedBy.java +++ /dev/null @@ -1,38 +0,0 @@ - -package eu.dnetlib.dhp.broker.oa.matchers; - -import java.util.List; - -import org.apache.commons.lang3.tuple.Pair; - -import eu.dnetlib.dhp.broker.model.Topic; -import eu.dnetlib.dhp.broker.oa.util.UpdateInfo; -import eu.dnetlib.dhp.schema.oaf.Dataset; -import eu.dnetlib.dhp.schema.oaf.Result; - -public class EnrichMissingDatasetIsReferencedBy - extends UpdateMatcher>, eu.dnetlib.broker.objects.Dataset> { - - public EnrichMissingDatasetIsReferencedBy() { - super(true); - } - - @Override - protected List> findUpdates(final Pair> source, - final Pair> target) { - // TODO Auto-generated method stub - return null; - } - - @Override - protected UpdateInfo generateUpdateInfo( - final eu.dnetlib.broker.objects.Dataset highlightValue, - final Pair> source, - final Pair> target) { - return new UpdateInfo<>( - Topic.ENRICH_MISSING_DATASET_IS_REFERENCED_BY, - highlightValue, source.getLeft(), target.getLeft(), - (p, rel) -> p.getDatasets().add(rel), - rel -> rel.getInstances().get(0).getUrl()); - } -} diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingDatasetIsRelatedTo.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingDatasetIsRelatedTo.java deleted file mode 100644 index 35f7c52b4..000000000 --- a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingDatasetIsRelatedTo.java +++ /dev/null @@ -1,38 +0,0 @@ - -package eu.dnetlib.dhp.broker.oa.matchers; - -import java.util.List; - -import org.apache.commons.lang3.tuple.Pair; - -import eu.dnetlib.dhp.broker.model.Topic; -import eu.dnetlib.dhp.broker.oa.util.UpdateInfo; -import eu.dnetlib.dhp.schema.oaf.Dataset; -import eu.dnetlib.dhp.schema.oaf.Result; - -public class EnrichMissingDatasetIsRelatedTo - extends UpdateMatcher>, eu.dnetlib.broker.objects.Dataset> { - - public EnrichMissingDatasetIsRelatedTo() { - super(true); - } - - @Override - protected List> findUpdates(final Pair> source, - final Pair> target) { - // TODO Auto-generated method stub - return null; - } - - @Override - protected UpdateInfo generateUpdateInfo( - final eu.dnetlib.broker.objects.Dataset highlightValue, - final Pair> source, - final Pair> target) { - return new UpdateInfo<>( - Topic.ENRICH_MISSING_DATASET_IS_RELATED_TO, - highlightValue, source.getLeft(), target.getLeft(), - (p, rel) -> p.getDatasets().add(rel), - rel -> rel.getInstances().get(0).getUrl()); - } -} diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingDatasetIsSupplementedBy.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingDatasetIsSupplementedBy.java deleted file mode 100644 index 1faa305b5..000000000 --- a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingDatasetIsSupplementedBy.java +++ /dev/null @@ -1,38 +0,0 @@ - -package eu.dnetlib.dhp.broker.oa.matchers; - -import java.util.List; - -import org.apache.commons.lang3.tuple.Pair; - -import eu.dnetlib.dhp.broker.model.Topic; -import eu.dnetlib.dhp.broker.oa.util.UpdateInfo; -import eu.dnetlib.dhp.schema.oaf.Dataset; -import eu.dnetlib.dhp.schema.oaf.Result; - -public class EnrichMissingDatasetIsSupplementedBy - extends UpdateMatcher>, eu.dnetlib.broker.objects.Dataset> { - - public EnrichMissingDatasetIsSupplementedBy() { - super(true); - } - - @Override - protected List> findUpdates(final Pair> source, - final Pair> target) { - // TODO Auto-generated method stub - return null; - } - - @Override - protected UpdateInfo generateUpdateInfo( - final eu.dnetlib.broker.objects.Dataset highlightValue, - final Pair> source, - final Pair> target) { - return new UpdateInfo<>( - Topic.ENRICH_MISSING_DATASET_IS_SUPPLEMENTED_BY, - highlightValue, source.getLeft(), target.getLeft(), - (p, rel) -> p.getDatasets().add(rel), - rel -> rel.getInstances().get(0).getUrl()); - } -} diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingDatasetIsSupplementedTo.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingDatasetIsSupplementedTo.java deleted file mode 100644 index d1b067272..000000000 --- a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingDatasetIsSupplementedTo.java +++ /dev/null @@ -1,38 +0,0 @@ - -package eu.dnetlib.dhp.broker.oa.matchers; - -import java.util.List; - -import org.apache.commons.lang3.tuple.Pair; - -import eu.dnetlib.dhp.broker.model.Topic; -import eu.dnetlib.dhp.broker.oa.util.UpdateInfo; -import eu.dnetlib.dhp.schema.oaf.Dataset; -import eu.dnetlib.dhp.schema.oaf.Result; - -public class EnrichMissingDatasetIsSupplementedTo - extends UpdateMatcher>, eu.dnetlib.broker.objects.Dataset> { - - public EnrichMissingDatasetIsSupplementedTo() { - super(true); - } - - @Override - protected List> findUpdates(final Pair> source, - final Pair> target) { - // TODO Auto-generated method stub - return null; - } - - @Override - protected UpdateInfo generateUpdateInfo( - final eu.dnetlib.broker.objects.Dataset highlightValue, - final Pair> source, - final Pair> target) { - return new UpdateInfo<>( - Topic.ENRICH_MISSING_DATASET_IS_SUPPLEMENTED_TO, - highlightValue, source.getLeft(), target.getLeft(), - (p, rel) -> p.getDatasets().add(rel), - rel -> rel.getInstances().get(0).getUrl()); - } -} diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingDatasetReferences.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingDatasetReferences.java deleted file mode 100644 index ce6adeba2..000000000 --- a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingDatasetReferences.java +++ /dev/null @@ -1,38 +0,0 @@ - -package eu.dnetlib.dhp.broker.oa.matchers; - -import java.util.List; - -import org.apache.commons.lang3.tuple.Pair; - -import eu.dnetlib.dhp.broker.model.Topic; -import eu.dnetlib.dhp.broker.oa.util.UpdateInfo; -import eu.dnetlib.dhp.schema.oaf.Dataset; -import eu.dnetlib.dhp.schema.oaf.Result; - -public class EnrichMissingDatasetReferences - extends UpdateMatcher>, eu.dnetlib.broker.objects.Dataset> { - - public EnrichMissingDatasetReferences() { - super(true); - } - - @Override - protected List> findUpdates(final Pair> source, - final Pair> target) { - // TODO Auto-generated method stub - return null; - } - - @Override - protected UpdateInfo generateUpdateInfo( - final eu.dnetlib.broker.objects.Dataset highlightValue, - final Pair> source, - final Pair> target) { - return new UpdateInfo<>( - Topic.ENRICH_MISSING_DATASET_REFERENCES, - highlightValue, source.getLeft(), target.getLeft(), - (p, rel) -> p.getDatasets().add(rel), - rel -> rel.getInstances().get(0).getUrl()); - } -} diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingPublicationIsReferencedBy.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingPublicationIsReferencedBy.java deleted file mode 100644 index 8bcee5a1f..000000000 --- a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingPublicationIsReferencedBy.java +++ /dev/null @@ -1,42 +0,0 @@ - -package eu.dnetlib.dhp.broker.oa.matchers; - -import java.util.Arrays; -import java.util.List; - -import org.apache.commons.lang3.tuple.Pair; - -import eu.dnetlib.dhp.broker.model.Topic; -import eu.dnetlib.dhp.broker.oa.util.UpdateInfo; -import eu.dnetlib.dhp.schema.oaf.Publication; -import eu.dnetlib.dhp.schema.oaf.Result; - -public class EnrichMissingPublicationIsReferencedBy - extends UpdateMatcher>, eu.dnetlib.broker.objects.Publication> { - - public EnrichMissingPublicationIsReferencedBy() { - super(true); - } - - @Override - protected List> findUpdates( - final Pair> source, - final Pair> target) { - // TODO Auto-generated method stub - return Arrays.asList(); - } - - @Override - protected UpdateInfo generateUpdateInfo( - final eu.dnetlib.broker.objects.Publication highlightValue, - final Pair> source, - final Pair> target) { - return new UpdateInfo<>( - Topic.ENRICH_MISSING_PUBLICATION_IS_REFERENCED_BY, - highlightValue, source.getLeft(), target.getLeft(), - (p, rel) -> { - }, // p.getPublications().add(rel), //TODO available in the future release of dnet-openaire-broker-common - rel -> rel.getOriginalId()); - } - -} diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingPublicationIsRelatedTo.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingPublicationIsRelatedTo.java deleted file mode 100644 index 0c16f9f56..000000000 --- a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingPublicationIsRelatedTo.java +++ /dev/null @@ -1,42 +0,0 @@ - -package eu.dnetlib.dhp.broker.oa.matchers; - -import java.util.Arrays; -import java.util.List; - -import org.apache.commons.lang3.tuple.Pair; - -import eu.dnetlib.dhp.broker.model.Topic; -import eu.dnetlib.dhp.broker.oa.util.UpdateInfo; -import eu.dnetlib.dhp.schema.oaf.Publication; -import eu.dnetlib.dhp.schema.oaf.Result; - -public class EnrichMissingPublicationIsRelatedTo - extends UpdateMatcher>, eu.dnetlib.broker.objects.Publication> { - - public EnrichMissingPublicationIsRelatedTo() { - super(true); - } - - @Override - protected List> findUpdates( - final Pair> source, - final Pair> target) { - // TODO Auto-generated method stub - return Arrays.asList(); - } - - @Override - protected UpdateInfo generateUpdateInfo( - final eu.dnetlib.broker.objects.Publication highlightValue, - final Pair> source, - final Pair> target) { - return new UpdateInfo<>( - Topic.ENRICH_MISSING_PUBLICATION_IS_RELATED_TO, - highlightValue, source.getLeft(), target.getLeft(), - (p, rel) -> { - }, // p.getPublications().add(rel), //TODO available in the future release of dnet-openaire-broker-common - rel -> rel.getOriginalId()); - } - -} diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingPublicationIsSupplementedBy.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingPublicationIsSupplementedBy.java deleted file mode 100644 index 0b3c33270..000000000 --- a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingPublicationIsSupplementedBy.java +++ /dev/null @@ -1,42 +0,0 @@ - -package eu.dnetlib.dhp.broker.oa.matchers; - -import java.util.Arrays; -import java.util.List; - -import org.apache.commons.lang3.tuple.Pair; - -import eu.dnetlib.dhp.broker.model.Topic; -import eu.dnetlib.dhp.broker.oa.util.UpdateInfo; -import eu.dnetlib.dhp.schema.oaf.Publication; -import eu.dnetlib.dhp.schema.oaf.Result; - -public class EnrichMissingPublicationIsSupplementedBy - extends UpdateMatcher>, eu.dnetlib.broker.objects.Publication> { - - public EnrichMissingPublicationIsSupplementedBy() { - super(true); - } - - @Override - protected List> findUpdates( - final Pair> source, - final Pair> target) { - // TODO Auto-generated method stub - return Arrays.asList(); - } - - @Override - protected UpdateInfo generateUpdateInfo( - final eu.dnetlib.broker.objects.Publication highlightValue, - final Pair> source, - final Pair> target) { - return new UpdateInfo<>( - Topic.ENRICH_MISSING_PUBLICATION_IS_SUPPLEMENTED_BY, - highlightValue, source.getLeft(), target.getLeft(), - (p, rel) -> { - }, // p.getPublications().add(rel), //TODO available in the future release of dnet-openaire-broker-common - rel -> rel.getOriginalId()); - } - -} diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingPublicationIsSupplementedTo.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingPublicationIsSupplementedTo.java deleted file mode 100644 index 0e72a8423..000000000 --- a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingPublicationIsSupplementedTo.java +++ /dev/null @@ -1,42 +0,0 @@ - -package eu.dnetlib.dhp.broker.oa.matchers; - -import java.util.Arrays; -import java.util.List; - -import org.apache.commons.lang3.tuple.Pair; - -import eu.dnetlib.dhp.broker.model.Topic; -import eu.dnetlib.dhp.broker.oa.util.UpdateInfo; -import eu.dnetlib.dhp.schema.oaf.Publication; -import eu.dnetlib.dhp.schema.oaf.Result; - -public class EnrichMissingPublicationIsSupplementedTo - extends UpdateMatcher>, eu.dnetlib.broker.objects.Publication> { - - public EnrichMissingPublicationIsSupplementedTo() { - super(true); - } - - @Override - protected List> findUpdates( - final Pair> source, - final Pair> target) { - // TODO Auto-generated method stub - return Arrays.asList(); - } - - @Override - protected UpdateInfo generateUpdateInfo( - final eu.dnetlib.broker.objects.Publication highlightValue, - final Pair> source, - final Pair> target) { - return new UpdateInfo<>( - Topic.ENRICH_MISSING_PUBLICATION_IS_SUPPLEMENTED_TO, - highlightValue, source.getLeft(), target.getLeft(), - (p, rel) -> { - }, // p.getPublications().add(rel), //TODO available in the future release of dnet-openaire-broker-common - rel -> rel.getOriginalId()); - } - -} diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingPublicationReferences.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingPublicationReferences.java deleted file mode 100644 index 6d1124974..000000000 --- a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingPublicationReferences.java +++ /dev/null @@ -1,42 +0,0 @@ - -package eu.dnetlib.dhp.broker.oa.matchers; - -import java.util.Arrays; -import java.util.List; - -import org.apache.commons.lang3.tuple.Pair; - -import eu.dnetlib.dhp.broker.model.Topic; -import eu.dnetlib.dhp.broker.oa.util.UpdateInfo; -import eu.dnetlib.dhp.schema.oaf.Publication; -import eu.dnetlib.dhp.schema.oaf.Result; - -public class EnrichMissingPublicationReferences - extends UpdateMatcher>, eu.dnetlib.broker.objects.Publication> { - - public EnrichMissingPublicationReferences() { - super(true); - } - - @Override - protected List> findUpdates( - final Pair> source, - final Pair> target) { - // TODO Auto-generated method stub - return Arrays.asList(); - } - - @Override - protected UpdateInfo generateUpdateInfo( - final eu.dnetlib.broker.objects.Publication highlightValue, - final Pair> source, - final Pair> target) { - return new UpdateInfo<>( - Topic.ENRICH_MISSING_PUBLICATION_REFERENCES, - highlightValue, source.getLeft(), target.getLeft(), - (p, rel) -> { - }, // p.getPublications().add(rel), //TODO available in the future release of dnet-openaire-broker-common - rel -> rel.getOriginalId()); - } - -} diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedDatasets/AbstractEnrichMissingDataset.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedDatasets/AbstractEnrichMissingDataset.java new file mode 100644 index 000000000..321fd4318 --- /dev/null +++ b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedDatasets/AbstractEnrichMissingDataset.java @@ -0,0 +1,63 @@ + +package eu.dnetlib.dhp.broker.oa.matchers.relatedDatasets; + +import java.util.List; +import java.util.Set; +import java.util.stream.Collectors; + +import org.apache.commons.lang3.tuple.Pair; + +import eu.dnetlib.dhp.broker.model.Topic; +import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher; +import eu.dnetlib.dhp.broker.oa.util.ConversionUtils; +import eu.dnetlib.dhp.broker.oa.util.UpdateInfo; +import eu.dnetlib.dhp.schema.oaf.Dataset; +import eu.dnetlib.dhp.schema.oaf.Result; + +public abstract class AbstractEnrichMissingDataset + extends UpdateMatcher>, eu.dnetlib.broker.objects.Dataset> { + + private final Topic topic; + + public AbstractEnrichMissingDataset(final Topic topic) { + super(true); + this.topic = topic; + } + + @Override + protected final List> findUpdates( + final Pair> source, + final Pair> target) { + + final Set existingDatasets = target + .getRight() + .stream() + .map(Dataset::getId) + .collect(Collectors.toSet()); + + return source + .getRight() + .stream() + .filter(d -> !existingDatasets.contains(d.getId())) + .map(ConversionUtils::oafDatasetToBrokerDataset) + .map(i -> generateUpdateInfo(i, source, target)) + .collect(Collectors.toList()); + + } + + @Override + protected final UpdateInfo generateUpdateInfo( + final eu.dnetlib.broker.objects.Dataset highlightValue, + final Pair> source, + final Pair> target) { + return new UpdateInfo<>( + getTopic(), + highlightValue, source.getLeft(), target.getLeft(), + (p, rel) -> p.getDatasets().add(rel), + rel -> rel.getInstances().get(0).getUrl()); + } + + public Topic getTopic() { + return topic; + } +} diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedDatasets/EnrichMissingDatasetIsReferencedBy.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedDatasets/EnrichMissingDatasetIsReferencedBy.java new file mode 100644 index 000000000..74ce761f4 --- /dev/null +++ b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedDatasets/EnrichMissingDatasetIsReferencedBy.java @@ -0,0 +1,12 @@ + +package eu.dnetlib.dhp.broker.oa.matchers.relatedDatasets; + +import eu.dnetlib.dhp.broker.model.Topic; + +public class EnrichMissingDatasetIsReferencedBy extends AbstractEnrichMissingDataset { + + public EnrichMissingDatasetIsReferencedBy() { + super(Topic.ENRICH_MISSING_DATASET_IS_REFERENCED_BY); + } + +} diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedDatasets/EnrichMissingDatasetIsRelatedTo.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedDatasets/EnrichMissingDatasetIsRelatedTo.java new file mode 100644 index 000000000..05a891059 --- /dev/null +++ b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedDatasets/EnrichMissingDatasetIsRelatedTo.java @@ -0,0 +1,12 @@ + +package eu.dnetlib.dhp.broker.oa.matchers.relatedDatasets; + +import eu.dnetlib.dhp.broker.model.Topic; + +public class EnrichMissingDatasetIsRelatedTo extends AbstractEnrichMissingDataset { + + public EnrichMissingDatasetIsRelatedTo() { + super(Topic.ENRICH_MISSING_DATASET_IS_RELATED_TO); + } + +} diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedDatasets/EnrichMissingDatasetIsSupplementedBy.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedDatasets/EnrichMissingDatasetIsSupplementedBy.java new file mode 100644 index 000000000..23bd68fa1 --- /dev/null +++ b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedDatasets/EnrichMissingDatasetIsSupplementedBy.java @@ -0,0 +1,12 @@ + +package eu.dnetlib.dhp.broker.oa.matchers.relatedDatasets; + +import eu.dnetlib.dhp.broker.model.Topic; + +public class EnrichMissingDatasetIsSupplementedBy extends AbstractEnrichMissingDataset { + + public EnrichMissingDatasetIsSupplementedBy() { + super(Topic.ENRICH_MISSING_DATASET_IS_SUPPLEMENTED_BY); + } + +} diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedDatasets/EnrichMissingDatasetIsSupplementedTo.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedDatasets/EnrichMissingDatasetIsSupplementedTo.java new file mode 100644 index 000000000..03160b6f0 --- /dev/null +++ b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedDatasets/EnrichMissingDatasetIsSupplementedTo.java @@ -0,0 +1,12 @@ + +package eu.dnetlib.dhp.broker.oa.matchers.relatedDatasets; + +import eu.dnetlib.dhp.broker.model.Topic; + +public class EnrichMissingDatasetIsSupplementedTo extends AbstractEnrichMissingDataset { + + public EnrichMissingDatasetIsSupplementedTo() { + super(Topic.ENRICH_MISSING_DATASET_IS_SUPPLEMENTED_TO); + } + +} diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedDatasets/EnrichMissingDatasetReferences.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedDatasets/EnrichMissingDatasetReferences.java new file mode 100644 index 000000000..bf1df053d --- /dev/null +++ b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedDatasets/EnrichMissingDatasetReferences.java @@ -0,0 +1,12 @@ + +package eu.dnetlib.dhp.broker.oa.matchers.relatedDatasets; + +import eu.dnetlib.dhp.broker.model.Topic; + +public class EnrichMissingDatasetReferences extends AbstractEnrichMissingDataset { + + public EnrichMissingDatasetReferences() { + super(Topic.ENRICH_MISSING_DATASET_REFERENCES); + } + +} diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingProject.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedProjects/EnrichMissingProject.java similarity index 90% rename from dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingProject.java rename to dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedProjects/EnrichMissingProject.java index 0197c99b1..461266d56 100644 --- a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingProject.java +++ b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedProjects/EnrichMissingProject.java @@ -1,5 +1,5 @@ -package eu.dnetlib.dhp.broker.oa.matchers; +package eu.dnetlib.dhp.broker.oa.matchers.relatedProjects; import java.util.Arrays; import java.util.List; @@ -7,6 +7,7 @@ import java.util.List; import org.apache.commons.lang3.tuple.Pair; import eu.dnetlib.dhp.broker.model.Topic; +import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher; import eu.dnetlib.dhp.broker.oa.util.UpdateInfo; import eu.dnetlib.dhp.schema.oaf.Project; import eu.dnetlib.dhp.schema.oaf.Result; diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMoreProject.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedProjects/EnrichMoreProject.java similarity index 90% rename from dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMoreProject.java rename to dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedProjects/EnrichMoreProject.java index 4bf45d943..d9bfb62d5 100644 --- a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMoreProject.java +++ b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedProjects/EnrichMoreProject.java @@ -1,5 +1,5 @@ -package eu.dnetlib.dhp.broker.oa.matchers; +package eu.dnetlib.dhp.broker.oa.matchers.relatedProjects; import java.util.Arrays; import java.util.List; @@ -7,6 +7,7 @@ import java.util.List; import org.apache.commons.lang3.tuple.Pair; import eu.dnetlib.dhp.broker.model.Topic; +import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher; import eu.dnetlib.dhp.broker.oa.util.UpdateInfo; import eu.dnetlib.dhp.schema.oaf.Project; import eu.dnetlib.dhp.schema.oaf.Result; diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedPublications/AbstractEnrichMissingPublication.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedPublications/AbstractEnrichMissingPublication.java new file mode 100644 index 000000000..405b06ca6 --- /dev/null +++ b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedPublications/AbstractEnrichMissingPublication.java @@ -0,0 +1,64 @@ + +package eu.dnetlib.dhp.broker.oa.matchers.relatedPublications; + +import java.util.List; +import java.util.Set; +import java.util.stream.Collectors; + +import org.apache.commons.lang3.tuple.Pair; + +import eu.dnetlib.dhp.broker.model.Topic; +import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher; +import eu.dnetlib.dhp.broker.oa.util.ConversionUtils; +import eu.dnetlib.dhp.broker.oa.util.UpdateInfo; +import eu.dnetlib.dhp.schema.oaf.Publication; +import eu.dnetlib.dhp.schema.oaf.Result; + +public abstract class AbstractEnrichMissingPublication + extends UpdateMatcher>, eu.dnetlib.broker.objects.Publication> { + + private final Topic topic; + + public AbstractEnrichMissingPublication(final Topic topic) { + super(true); + this.topic = topic; + } + + @Override + protected final List> findUpdates( + final Pair> source, + final Pair> target) { + + final Set existingPublications = target + .getRight() + .stream() + .map(Publication::getId) + .collect(Collectors.toSet()); + + return source + .getRight() + .stream() + .filter(d -> !existingPublications.contains(d.getId())) + .map(ConversionUtils::oafPublicationToBrokerPublication) + .map(i -> generateUpdateInfo(i, source, target)) + .collect(Collectors.toList()); + + } + + @Override + protected final UpdateInfo generateUpdateInfo( + final eu.dnetlib.broker.objects.Publication highlightValue, + final Pair> source, + final Pair> target) { + return new UpdateInfo<>( + getTopic(), + highlightValue, source.getLeft(), target.getLeft(), + (p, rel) -> { + }, // p.getPublications().add(rel), //TODO available in the future release of dnet-openaire-broker-common + rel -> rel.getInstances().get(0).getUrl()); + } + + public Topic getTopic() { + return topic; + } +} diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedPublications/EnrichMissingPublicationIsReferencedBy.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedPublications/EnrichMissingPublicationIsReferencedBy.java new file mode 100644 index 000000000..73fa8a45f --- /dev/null +++ b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedPublications/EnrichMissingPublicationIsReferencedBy.java @@ -0,0 +1,12 @@ + +package eu.dnetlib.dhp.broker.oa.matchers.relatedPublications; + +import eu.dnetlib.dhp.broker.model.Topic; + +public class EnrichMissingPublicationIsReferencedBy extends AbstractEnrichMissingPublication { + + public EnrichMissingPublicationIsReferencedBy() { + super(Topic.ENRICH_MISSING_PUBLICATION_IS_REFERENCED_BY); + } + +} diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedPublications/EnrichMissingPublicationIsRelatedTo.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedPublications/EnrichMissingPublicationIsRelatedTo.java new file mode 100644 index 000000000..361ea3b34 --- /dev/null +++ b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedPublications/EnrichMissingPublicationIsRelatedTo.java @@ -0,0 +1,12 @@ + +package eu.dnetlib.dhp.broker.oa.matchers.relatedPublications; + +import eu.dnetlib.dhp.broker.model.Topic; + +public class EnrichMissingPublicationIsRelatedTo extends AbstractEnrichMissingPublication { + + public EnrichMissingPublicationIsRelatedTo() { + super(Topic.ENRICH_MISSING_PUBLICATION_IS_RELATED_TO); + } + +} diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedPublications/EnrichMissingPublicationIsSupplementedBy.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedPublications/EnrichMissingPublicationIsSupplementedBy.java new file mode 100644 index 000000000..7e8863b1e --- /dev/null +++ b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedPublications/EnrichMissingPublicationIsSupplementedBy.java @@ -0,0 +1,12 @@ + +package eu.dnetlib.dhp.broker.oa.matchers.relatedPublications; + +import eu.dnetlib.dhp.broker.model.Topic; + +public class EnrichMissingPublicationIsSupplementedBy extends AbstractEnrichMissingPublication { + + public EnrichMissingPublicationIsSupplementedBy() { + super(Topic.ENRICH_MISSING_PUBLICATION_IS_SUPPLEMENTED_BY); + } + +} diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedPublications/EnrichMissingPublicationIsSupplementedTo.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedPublications/EnrichMissingPublicationIsSupplementedTo.java new file mode 100644 index 000000000..dc4e51377 --- /dev/null +++ b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedPublications/EnrichMissingPublicationIsSupplementedTo.java @@ -0,0 +1,12 @@ + +package eu.dnetlib.dhp.broker.oa.matchers.relatedPublications; + +import eu.dnetlib.dhp.broker.model.Topic; + +public class EnrichMissingPublicationIsSupplementedTo extends AbstractEnrichMissingPublication { + + public EnrichMissingPublicationIsSupplementedTo() { + super(Topic.ENRICH_MISSING_PUBLICATION_IS_SUPPLEMENTED_TO); + } + +} diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedPublications/EnrichMissingPublicationReferences.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedPublications/EnrichMissingPublicationReferences.java new file mode 100644 index 000000000..5198098bc --- /dev/null +++ b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/relatedPublications/EnrichMissingPublicationReferences.java @@ -0,0 +1,12 @@ + +package eu.dnetlib.dhp.broker.oa.matchers.relatedPublications; + +import eu.dnetlib.dhp.broker.model.Topic; + +public class EnrichMissingPublicationReferences extends AbstractEnrichMissingPublication { + + public EnrichMissingPublicationReferences() { + super(Topic.ENRICH_MISSING_PUBLICATION_REFERENCES); + } + +} diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingAbstract.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMissingAbstract.java similarity index 90% rename from dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingAbstract.java rename to dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMissingAbstract.java index 6dab6355f..a418b633e 100644 --- a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingAbstract.java +++ b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMissingAbstract.java @@ -1,11 +1,12 @@ -package eu.dnetlib.dhp.broker.oa.matchers; +package eu.dnetlib.dhp.broker.oa.matchers.simple; import java.util.ArrayList; import java.util.Arrays; import java.util.List; import eu.dnetlib.dhp.broker.model.Topic; +import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher; import eu.dnetlib.dhp.broker.oa.util.UpdateInfo; import eu.dnetlib.dhp.schema.oaf.Result; diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingAuthorOrcid.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMissingAuthorOrcid.java similarity index 90% rename from dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingAuthorOrcid.java rename to dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMissingAuthorOrcid.java index c7146ad79..b5c2f7e72 100644 --- a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingAuthorOrcid.java +++ b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMissingAuthorOrcid.java @@ -1,5 +1,5 @@ -package eu.dnetlib.dhp.broker.oa.matchers; +package eu.dnetlib.dhp.broker.oa.matchers.simple; import java.util.Arrays; import java.util.List; @@ -7,6 +7,7 @@ import java.util.List; import org.apache.commons.lang3.tuple.Pair; import eu.dnetlib.dhp.broker.model.Topic; +import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher; import eu.dnetlib.dhp.broker.oa.util.UpdateInfo; import eu.dnetlib.dhp.schema.oaf.Result; diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingOpenAccess.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMissingOpenAccess.java similarity index 93% rename from dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingOpenAccess.java rename to dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMissingOpenAccess.java index 81263c6c3..c7e9dcbc1 100644 --- a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingOpenAccess.java +++ b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMissingOpenAccess.java @@ -1,5 +1,5 @@ -package eu.dnetlib.dhp.broker.oa.matchers; +package eu.dnetlib.dhp.broker.oa.matchers.simple; import java.util.Arrays; import java.util.List; @@ -7,6 +7,7 @@ import java.util.stream.Collectors; import eu.dnetlib.broker.objects.Instance; import eu.dnetlib.dhp.broker.model.Topic; +import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher; import eu.dnetlib.dhp.broker.oa.util.BrokerConstants; import eu.dnetlib.dhp.broker.oa.util.ConversionUtils; import eu.dnetlib.dhp.broker.oa.util.UpdateInfo; diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingPid.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMissingPid.java similarity index 91% rename from dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingPid.java rename to dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMissingPid.java index 5f10bb4d9..522d46d40 100644 --- a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingPid.java +++ b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMissingPid.java @@ -1,5 +1,5 @@ -package eu.dnetlib.dhp.broker.oa.matchers; +package eu.dnetlib.dhp.broker.oa.matchers.simple; import java.util.Arrays; import java.util.List; @@ -7,6 +7,7 @@ import java.util.stream.Collectors; import eu.dnetlib.broker.objects.Pid; import eu.dnetlib.dhp.broker.model.Topic; +import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher; import eu.dnetlib.dhp.broker.oa.util.ConversionUtils; import eu.dnetlib.dhp.broker.oa.util.UpdateInfo; import eu.dnetlib.dhp.schema.oaf.Result; diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingPublicationDate.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMissingPublicationDate.java similarity index 90% rename from dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingPublicationDate.java rename to dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMissingPublicationDate.java index 19ef2bab7..197ace97c 100644 --- a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingPublicationDate.java +++ b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMissingPublicationDate.java @@ -1,11 +1,12 @@ -package eu.dnetlib.dhp.broker.oa.matchers; +package eu.dnetlib.dhp.broker.oa.matchers.simple; import java.util.ArrayList; import java.util.Arrays; import java.util.List; import eu.dnetlib.dhp.broker.model.Topic; +import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher; import eu.dnetlib.dhp.broker.oa.util.UpdateInfo; import eu.dnetlib.dhp.schema.oaf.Result; diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingSoftware.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMissingSoftware.java similarity index 91% rename from dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingSoftware.java rename to dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMissingSoftware.java index 954ee48be..4fcba43a4 100644 --- a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingSoftware.java +++ b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMissingSoftware.java @@ -1,5 +1,5 @@ -package eu.dnetlib.dhp.broker.oa.matchers; +package eu.dnetlib.dhp.broker.oa.matchers.simple; import java.util.Arrays; import java.util.List; @@ -7,6 +7,7 @@ import java.util.List; import org.apache.commons.lang3.tuple.Pair; import eu.dnetlib.dhp.broker.model.Topic; +import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher; import eu.dnetlib.dhp.broker.oa.util.UpdateInfo; import eu.dnetlib.dhp.schema.oaf.Result; import eu.dnetlib.dhp.schema.oaf.Software; diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingSubject.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMissingSubject.java similarity index 93% rename from dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingSubject.java rename to dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMissingSubject.java index a7c72f6ea..290bad48b 100644 --- a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMissingSubject.java +++ b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMissingSubject.java @@ -1,5 +1,5 @@ -package eu.dnetlib.dhp.broker.oa.matchers; +package eu.dnetlib.dhp.broker.oa.matchers.simple; import java.util.List; import java.util.Set; @@ -8,6 +8,7 @@ import java.util.stream.Collectors; import org.apache.commons.lang3.tuple.Pair; import eu.dnetlib.dhp.broker.model.Topic; +import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher; import eu.dnetlib.dhp.broker.oa.util.ConversionUtils; import eu.dnetlib.dhp.broker.oa.util.UpdateInfo; import eu.dnetlib.dhp.schema.oaf.Qualifier; diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMoreOpenAccess.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMoreOpenAccess.java similarity index 93% rename from dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMoreOpenAccess.java rename to dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMoreOpenAccess.java index 2cd2775c9..c376da44d 100644 --- a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMoreOpenAccess.java +++ b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMoreOpenAccess.java @@ -1,5 +1,5 @@ -package eu.dnetlib.dhp.broker.oa.matchers; +package eu.dnetlib.dhp.broker.oa.matchers.simple; import java.util.List; import java.util.Set; @@ -7,6 +7,7 @@ import java.util.stream.Collectors; import eu.dnetlib.broker.objects.Instance; import eu.dnetlib.dhp.broker.model.Topic; +import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher; import eu.dnetlib.dhp.broker.oa.util.BrokerConstants; import eu.dnetlib.dhp.broker.oa.util.ConversionUtils; import eu.dnetlib.dhp.broker.oa.util.UpdateInfo; diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMorePid.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMorePid.java similarity index 92% rename from dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMorePid.java rename to dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMorePid.java index 048d19747..2ee327c83 100644 --- a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMorePid.java +++ b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMorePid.java @@ -1,5 +1,5 @@ -package eu.dnetlib.dhp.broker.oa.matchers; +package eu.dnetlib.dhp.broker.oa.matchers.simple; import java.util.List; import java.util.Set; @@ -7,6 +7,7 @@ import java.util.stream.Collectors; import eu.dnetlib.broker.objects.Pid; import eu.dnetlib.dhp.broker.model.Topic; +import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher; import eu.dnetlib.dhp.broker.oa.util.ConversionUtils; import eu.dnetlib.dhp.broker.oa.util.UpdateInfo; import eu.dnetlib.dhp.schema.oaf.Result; diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMoreSoftware.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMoreSoftware.java similarity index 91% rename from dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMoreSoftware.java rename to dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMoreSoftware.java index 9760504f6..a1affff62 100644 --- a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMoreSoftware.java +++ b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMoreSoftware.java @@ -1,5 +1,5 @@ -package eu.dnetlib.dhp.broker.oa.matchers; +package eu.dnetlib.dhp.broker.oa.matchers.simple; import java.util.Arrays; import java.util.List; @@ -7,6 +7,7 @@ import java.util.List; import org.apache.commons.lang3.tuple.Pair; import eu.dnetlib.dhp.broker.model.Topic; +import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher; import eu.dnetlib.dhp.broker.oa.util.UpdateInfo; import eu.dnetlib.dhp.schema.oaf.Result; import eu.dnetlib.dhp.schema.oaf.Software; diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMoreSubject.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMoreSubject.java similarity index 93% rename from dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMoreSubject.java rename to dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMoreSubject.java index 67c2f0116..b38445e88 100644 --- a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/EnrichMoreSubject.java +++ b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/matchers/simple/EnrichMoreSubject.java @@ -1,5 +1,5 @@ -package eu.dnetlib.dhp.broker.oa.matchers; +package eu.dnetlib.dhp.broker.oa.matchers.simple; import java.util.List; import java.util.Set; @@ -8,6 +8,7 @@ import java.util.stream.Collectors; import org.apache.commons.lang3.tuple.Pair; import eu.dnetlib.dhp.broker.model.Topic; +import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher; import eu.dnetlib.dhp.broker.oa.util.ConversionUtils; import eu.dnetlib.dhp.broker.oa.util.UpdateInfo; import eu.dnetlib.dhp.schema.oaf.Result; diff --git a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/ConversionUtils.java b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/ConversionUtils.java index 2e2ce202a..2f87d0ee7 100644 --- a/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/ConversionUtils.java +++ b/dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/ConversionUtils.java @@ -7,6 +7,8 @@ import org.apache.commons.lang3.tuple.Pair; import eu.dnetlib.broker.objects.Instance; import eu.dnetlib.broker.objects.Pid; +import eu.dnetlib.dhp.schema.oaf.Dataset; +import eu.dnetlib.dhp.schema.oaf.Publication; import eu.dnetlib.dhp.schema.oaf.StructuredProperty; public class ConversionUtils { @@ -33,4 +35,15 @@ public class ConversionUtils { return Pair.of(sp.getQualifier().getClassid(), sp.getValue()); } + public static final eu.dnetlib.broker.objects.Dataset oafDatasetToBrokerDataset(final Dataset d) { + final eu.dnetlib.broker.objects.Dataset res = new eu.dnetlib.broker.objects.Dataset(); + // TODO + return res; + } + + public static final eu.dnetlib.broker.objects.Publication oafPublicationToBrokerPublication(final Publication d) { + final eu.dnetlib.broker.objects.Publication res = new eu.dnetlib.broker.objects.Publication(); + // TODO + return res; + } } diff --git a/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/AuthorMerger.java b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/AuthorMerger.java index 43df19f8a..5e63c4b65 100644 --- a/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/AuthorMerger.java +++ b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/AuthorMerger.java @@ -20,12 +20,7 @@ public class AuthorMerger { public static List merge(List> authors) { - authors.sort(new Comparator>() { - @Override - public int compare(List o1, List o2) { - return -Integer.compare(countAuthorsPids(o1), countAuthorsPids(o2)); - } - }); + authors.sort((o1, o2) -> -Integer.compare(countAuthorsPids(o1), countAuthorsPids(o2))); List author = new ArrayList<>(); @@ -86,20 +81,28 @@ public class AuthorMerger { .stream() .map(ba -> new Tuple2<>(sim(ba, a._2()), ba)) .max(Comparator.comparing(Tuple2::_1)); - if (simAuthor.isPresent() && simAuthor.get()._1() > THRESHOLD) { - Author r = simAuthor.get()._2(); - if (r.getPid() == null) { - r.setPid(new ArrayList<>()); + + if(simAuthor.isPresent()) { + double th = THRESHOLD; + //increase the threshold if the surname is too short + if (simAuthor.get()._2().getSurname() != null && simAuthor.get()._2().getSurname().length()<=3) + th = 0.99; + + if (simAuthor.get()._1() > th) { + Author r = simAuthor.get()._2(); + if (r.getPid() == null) { + r.setPid(new ArrayList<>()); + } + r.getPid().add(a._1()); } - r.getPid().add(a._1()); } }); } public static String pidToComparableString(StructuredProperty pid) { - return (pid.getQualifier() != null - ? pid.getQualifier().getClassid() != null ? pid.getQualifier().getClassid().toLowerCase() : "" - : "") + (pid.getValue() != null ? pid.getValue().toLowerCase() : ""); + return (pid.getQualifier() != null ? + pid.getQualifier().getClassid() != null ? pid.getQualifier().getClassid().toLowerCase() : "" : "") + + (pid.getValue() != null ? pid.getValue().toLowerCase() : ""); } public static int countAuthorsPids(List authors) { @@ -120,12 +123,14 @@ public class AuthorMerger { final Person pa = parse(a); final Person pb = parse(b); + //if both are accurate (e.g. they have name and surname) if (pa.isAccurate() & pb.isAccurate()) { - return new JaroWinkler() - .score(normalize(pa.getSurnameString()), normalize(pb.getSurnameString())); + return + new JaroWinkler().score(normalize(pa.getSurnameString()), normalize(pb.getSurnameString()))*0.5 + + new JaroWinkler().score(normalize(pa.getNameString()), normalize(pb.getNameString()))*0.5; } else { - return new JaroWinkler() - .score(normalize(pa.getNormalisedFullname()), normalize(pb.getNormalisedFullname())); + return + new JaroWinkler().score(normalize(pa.getNormalisedFullname()), normalize(pb.getNormalisedFullname())); } } diff --git a/dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/EntityMergerTest.java b/dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/EntityMergerTest.java index 0a3bf62ea..55879030b 100644 --- a/dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/EntityMergerTest.java +++ b/dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/EntityMergerTest.java @@ -21,6 +21,7 @@ import scala.Tuple2; public class EntityMergerTest implements Serializable { List> publications; + List> publications2; String testEntityBasePath; DataInfo dataInfo; @@ -36,6 +37,7 @@ public class EntityMergerTest implements Serializable { .getAbsolutePath(); publications = readSample(testEntityBasePath + "/publication_merge.json", Publication.class); + publications2 = readSample(testEntityBasePath + "/publication_merge2.json", Publication.class); pub_top = getTopPub(publications); @@ -90,6 +92,17 @@ public class EntityMergerTest implements Serializable { assertEquals(AuthorMerger.countAuthorsPids(pub_merged.getAuthor()), 4); } + @Test + public void publicationMergerTest2() throws InstantiationException, IllegalAccessException, IOException { + + Publication pub_merged = DedupRecordFactory + .entityMerger(dedupId, publications2.iterator(), 0, dataInfo, Publication.class); + + assertEquals(pub_merged.getAuthor().size(), 27); + // insert assertions here + + } + public DataInfo setDI() { DataInfo dataInfo = new DataInfo(); dataInfo.setTrust("0.9"); diff --git a/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/json/publication_merge2.json b/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/json/publication_merge2.json new file mode 100644 index 000000000..a7937c287 --- /dev/null +++ b/dhp-workflows/dhp-dedup-openaire/src/test/resources/eu/dnetlib/dhp/dedup/json/publication_merge2.json @@ -0,0 +1,4 @@ +{"id":"50|doajarticles::842fa3b99fcdccafb4d5c8a815f56efa","dateofcollection":"2020-04-06T12:22:31.216Z","title":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"main title","classname":"main title","schemeid":"dnet:dataCite_title","schemename":"dnet:dataCite_title"},"value":"Increased Expression of Herpes Virus-Encoded hsv1-miR-H18 and hsv2-miR-H9-5p in Cancer-Containing Prostate Tissue Compared to That in Benign Prostate Hyperplasia Tissue"}],"publisher":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"Korean Continence Society"},"bestaccessright":null,"dataInfo":{"deletedbyinference":true,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"collectedfrom":[{"dataInfo":null,"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles"}],"pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"doi","classname":"doi","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"10.5213/inj.1632552.276"}],"author":[{"affiliation":null,"fullname":"Seok Joong Yun","name":null,"pid":[],"rank":1,"surname":null},{"affiliation":null,"fullname":"Pildu Jeong","name":null,"pid":[],"rank":2,"surname":null},{"affiliation":null,"fullname":"Ho Won Kang","name":null,"pid":[],"rank":3,"surname":null},{"affiliation":null,"fullname":"Helen Ki Shinn","name":null,"pid":[],"rank":4,"surname":null},{"affiliation":null,"fullname":"Ye-Hwan Kim","name":null,"pid":[],"rank":5,"surname":null},{"affiliation":null,"fullname":"Chunri Yan","name":null,"pid":[],"rank":6,"surname":null},{"affiliation":null,"fullname":"Young-Ki Choi","name":null,"pid":[],"rank":7,"surname":null},{"affiliation":null,"fullname":"Dongho Kim","name":null,"pid":[],"rank":8,"surname":null},{"affiliation":null,"fullname":"Dong Hee Ryu","name":null,"pid":[],"rank":9,"surname":null},{"affiliation":null,"fullname":"Yun-Sok Ha","name":null,"pid":[],"rank":10,"surname":null},{"affiliation":null,"fullname":"Tae-Hwan Kim","name":null,"pid":[],"rank":11,"surname":null},{"affiliation":null,"fullname":"Tae Gyun Kwon","name":null,"pid":[],"rank":12,"surname":null},{"affiliation":null,"fullname":"Jung Min Kim","name":null,"pid":[],"rank":13,"surname":null},{"affiliation":null,"fullname":"Sang Heon Suh","name":null,"pid":[],"rank":14,"surname":null},{"affiliation":null,"fullname":"Seon-Kyu Kim","name":null,"pid":[],"rank":15,"surname":null},{"affiliation":null,"fullname":"Seon-Young Kim","name":null,"pid":[],"rank":16,"surname":null},{"affiliation":null,"fullname":"Sang Tae Kim","name":null,"pid":[],"rank":17,"surname":null},{"affiliation":null,"fullname":"Won Tae Kim","name":null,"pid":[],"rank":18,"surname":null},{"affiliation":null,"fullname":"Ok-Jun Lee","name":null,"pid":[],"rank":19,"surname":null},{"affiliation":null,"fullname":"Sung-Kwon Moon","name":null,"pid":[],"rank":20,"surname":null},{"affiliation":null,"fullname":"Nam-Hyung Kim","name":null,"pid":[],"rank":21,"surname":null},{"affiliation":null,"fullname":"Isaac Yi Kim","name":null,"pid":[],"rank":22,"surname":null},{"affiliation":null,"fullname":"Jayoung Kim","name":null,"pid":[],"rank":23,"surname":null},{"affiliation":null,"fullname":"Hee-Jae Cha","name":null,"pid":[],"rank":24,"surname":null},{"affiliation":null,"fullname":"Yung-Hyun Choi","name":null,"pid":[],"rank":25,"surname":null},{"affiliation":null,"fullname":"Eun-Jong Cha","name":null,"pid":[],"rank":26,"surname":null},{"affiliation":null,"fullname":"Wun-Jae Kim","name":null,"pid":[],"rank":27,"surname":null}],"resulttype":{"classid":"publication","classname":"publication","schemeid":"dnet:result_typologies","schemename":"dnet:result_typologies"},"language":{"classid":"eng","classname":"English","schemeid":"dnet:languages","schemename":"dnet:languages"},"country":[],"subject":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"MicroRNAs"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Prostate Neoplasms"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Herpesviridae"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Prostate Hyperplasia"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Diseases of the genitourinary system. Urology"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"RC870-923"}],"description":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"Purpose: Previously, we reported the presence of virus-encoded microRNAs (miRNAs) in the urine of prostate cancer (CaP) patients. In this study, we investigated the expression of two herpes virus-encoded miRNAs in prostate tissue. Methods: A total of 175 tissue samples from noncancerous benign prostatic hyperplasia (BPH), 248 tissue samples from patients with CaP and BPH, and 50 samples from noncancerous surrounding tissues from these same patients were analyzed for the expression of two herpes virus-encoded miRNAs by real-time polymerase chain reaction (PCR) and immunocytochemistry using nanoparticles as molecular beacons. Results: Real-time reverse transcription-PCR results revealed significantly higher expression of hsv1-miR-H18 and hsv2-miRH9- 5p in surrounding noncancerous and CaP tissues than that in BPH tissue (each comparison, P<0.001). Of note, these miRNA were expressed equivalently in the CaP tissues and surrounding noncancerous tissues. Moreover, immunocytochemistry clearly demonstrated a significant enrichment of both hsv1-miR-H18 and hsv2-miR-H9 beacon-labeled cells in CaP and surrounding noncancerous tissue compared to that in BPH tissue (each comparison, P<0.05 for hsv1-miR-H18 and hsv2- miR-H9). Conclusions: These results suggest that increased expression of hsv1-miR-H18 and hsv2-miR-H95p might be associated with tumorigenesis in the prostate. Further studies will be required to elucidate the role of these miRNAs with respect to CaP and herpes viral infections."}],"dateofacceptance":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"2016-06-01"},"embargoenddate":null,"resourcetype":null,"context":[],"instance":[{"accessright":{"classid":"OPEN","classname":"Open 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Neoplasms"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Herpesviridae"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"Prostate Hyperplasia"}],"description":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"Purpose: Previously, we reported the presence of virus-encoded microRNAs (miRNAs) in the urine of prostate cancer (CaP) patients. In this study, we investigated the expression of two herpes virus-encoded miRNAs in prostate tissue. Methods: A total of 175 tissue samples from noncancerous benign prostatic hyperplasia (BPH), 248 tissue samples from patients with CaP and BPH, and 50 samples from noncancerous surrounding tissues from these same patients were analyzed for the expression of two herpes virus-encoded miRNAs by real-time polymerase chain reaction (PCR) and immunocytochemistry using nanoparticles as molecular beacons. Results: Real-time reverse transcription-PCR results revealed significantly higher expression of hsv1-miR-H18 and hsv2-miRH9- 5p in surrounding noncancerous and CaP tissues than that in BPH tissue (each comparison, P<0.001). Of note, these miRNA were expressed equivalently in the CaP tissues and surrounding noncancerous tissues. Moreover, immunocytochemistry clearly demonstrated a significant enrichment of both hsv1-miR-H18 and hsv2-miR-H9 beacon-labeled cells in CaP and surrounding noncancerous tissue compared to that in BPH tissue (each comparison, P<0.05 for hsv1-miR-H18 and hsv2- miR-H9). Conclusions: These results suggest that increased expression of hsv1-miR-H18 and hsv2-miR-H95p might be associated with tumorigenesis in the prostate. Further studies will be required to elucidate the role of these miRNAs with respect to CaP and herpes viral infections."}],"dateofacceptance":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"2016-06-01"},"embargoenddate":null,"resourcetype":null,"context":[],"instance":[{"accessright":{"classid":"OPEN","classname":"Open Access","schemeid":"dnet:access_modes","schemename":"dnet:access_modes"},"collectedfrom":{"dataInfo":null,"key":"10|opendoar____::eda80a3d5b344bc40f3bc04f65b7a357","value":"PubMed 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