forked from D-Net/dnet-hadoop
branch cities merged into master
This commit is contained in:
miconis
commit
1d29bae47c
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[INFO] Scanning for projects...
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[INFO] ------------------------------------------------------------------------
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[INFO] Reactor Build Order:
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[INFO]
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[INFO] dnet-dedup [pom]
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[INFO] dnet-pace-core [jar]
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[INFO] dnet-dedup-test [jar]
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[INFO]
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[INFO] -----------------------< eu.dnetlib:dnet-dedup >------------------------
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[INFO] Building dnet-dedup 3.0.3-SNAPSHOT [1/3]
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[INFO] --------------------------------[ pom ]---------------------------------
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[INFO]
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[INFO] --- maven-dependency-plugin:3.0.0:tree (default-cli) @ dnet-dedup ---
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[INFO] eu.dnetlib:dnet-dedup:pom:3.0.3-SNAPSHOT
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[INFO]
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[INFO] ---------------------< eu.dnetlib:dnet-pace-core >----------------------
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[INFO] Building dnet-pace-core 3.0.3-SNAPSHOT [2/3]
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[INFO] --------------------------------[ jar ]---------------------------------
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[INFO]
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[INFO] --- maven-dependency-plugin:3.0.0:tree (default-cli) @ dnet-pace-core ---
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[INFO] eu.dnetlib:dnet-pace-core:jar:3.0.3-SNAPSHOT
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[INFO] +- edu.cmu:secondstring:jar:1.0.0:compile
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[INFO] +- com.google.guava:guava:jar:15.0:compile
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[INFO] +- com.google.code.gson:gson:jar:2.2.2:compile
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[INFO] +- commons-lang:commons-lang:jar:2.6:compile
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[INFO] +- commons-io:commons-io:jar:2.4:compile
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[INFO] +- commons-collections:commons-collections:jar:3.2.1:compile
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[INFO] +- com.googlecode.protobuf-java-format:protobuf-java-format:jar:1.2:compile
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[INFO] +- org.antlr:stringtemplate:jar:3.2:compile
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[INFO] | \- org.antlr:antlr:jar:2.7.7:compile
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[INFO] +- commons-logging:commons-logging:jar:1.1.3:compile
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[INFO] +- junit:junit:jar:4.9:test
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[INFO] | \- org.hamcrest:hamcrest-core:jar:1.1:test
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[INFO] +- org.reflections:reflections:jar:0.9.10:compile
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[INFO] | +- org.javassist:javassist:jar:3.19.0-GA:compile
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[INFO] | \- com.google.code.findbugs:annotations:jar:2.0.1:compile
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[INFO] +- com.fasterxml.jackson.core:jackson-databind:jar:2.6.6:compile
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[INFO] | +- com.fasterxml.jackson.core:jackson-annotations:jar:2.6.0:compile
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[INFO] | \- com.fasterxml.jackson.core:jackson-core:jar:2.6.6:compile
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[INFO] +- org.codehaus.jackson:jackson-mapper-asl:jar:1.9.13:compile
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[INFO] | \- org.codehaus.jackson:jackson-core-asl:jar:1.9.13:compile
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[INFO] \- org.apache.commons:commons-math3:jar:3.6.1:compile
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[INFO]
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[INFO] ---------------------< eu.dnetlib:dnet-dedup-test >---------------------
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[INFO] Building dnet-dedup-test 3.0.3-SNAPSHOT [3/3]
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[INFO] --------------------------------[ jar ]---------------------------------
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[INFO]
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[INFO] --- maven-dependency-plugin:3.0.0:tree (default-cli) @ dnet-dedup-test ---
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[INFO] eu.dnetlib:dnet-dedup-test:jar:3.0.3-SNAPSHOT
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[INFO] +- eu.dnetlib:dnet-pace-core:jar:3.0.3-SNAPSHOT:compile
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[INFO] | +- edu.cmu:secondstring:jar:1.0.0:compile
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[INFO] | +- com.google.guava:guava:jar:15.0:compile
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[INFO] | +- com.google.code.gson:gson:jar:2.2.2:compile
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[INFO] | +- commons-lang:commons-lang:jar:2.6:compile
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[INFO] | +- commons-io:commons-io:jar:2.4:compile
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[INFO] | +- commons-collections:commons-collections:jar:3.2.1:compile
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[INFO] | +- com.googlecode.protobuf-java-format:protobuf-java-format:jar:1.2:compile
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[INFO] | +- org.antlr:stringtemplate:jar:3.2:compile
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[INFO] | | \- org.antlr:antlr:jar:2.7.7:compile
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[INFO] | +- commons-logging:commons-logging:jar:1.1.3:compile
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[INFO] | +- org.reflections:reflections:jar:0.9.10:compile
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[INFO] | | +- org.javassist:javassist:jar:3.19.0-GA:compile
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[INFO] | | \- com.google.code.findbugs:annotations:jar:2.0.1:compile
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[INFO] | +- com.fasterxml.jackson.core:jackson-databind:jar:2.6.6:compile
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[INFO] | | +- com.fasterxml.jackson.core:jackson-annotations:jar:2.6.0:compile
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[INFO] | | \- com.fasterxml.jackson.core:jackson-core:jar:2.6.6:compile
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[INFO] | +- org.codehaus.jackson:jackson-mapper-asl:jar:1.9.13:compile
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[INFO] | | \- org.codehaus.jackson:jackson-core-asl:jar:1.9.13:compile
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[INFO] | \- org.apache.commons:commons-math3:jar:3.6.1:compile
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[INFO] +- eu.dnetlib:dnet-openaire-data-protos:jar:3.9.3-proto250:compile
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[INFO] | +- com.google.protobuf:protobuf-java:jar:2.5.0:compile
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[INFO] | \- log4j:log4j:jar:1.2.17:compile (version selected from constraint [1.2.17,1.2.17])
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[INFO] +- org.apache.spark:spark-core_2.11:jar:2.2.0:provided
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[INFO] | +- org.apache.avro:avro:jar:1.7.7:provided
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[INFO] | | +- com.thoughtworks.paranamer:paranamer:jar:2.3:provided
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[INFO] | | \- org.apache.commons:commons-compress:jar:1.4.1:provided
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[INFO] | | \- org.tukaani:xz:jar:1.0:provided
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[INFO] | +- org.apache.avro:avro-mapred:jar:hadoop2:1.7.7:provided
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[INFO] | | +- org.apache.avro:avro-ipc:jar:1.7.7:provided
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[INFO] | | \- org.apache.avro:avro-ipc:jar:tests:1.7.7:provided
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[INFO] | +- com.twitter:chill_2.11:jar:0.8.0:provided
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[INFO] | | \- com.esotericsoftware:kryo-shaded:jar:3.0.3:provided
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[INFO] | | +- com.esotericsoftware:minlog:jar:1.3.0:provided
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[INFO] | | \- org.objenesis:objenesis:jar:2.1:provided
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[INFO] | +- com.twitter:chill-java:jar:0.8.0:provided
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[INFO] | +- org.apache.xbean:xbean-asm5-shaded:jar:4.4:provided
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[INFO] | +- org.apache.hadoop:hadoop-client:jar:2.6.5:provided
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[INFO] | | +- org.apache.hadoop:hadoop-common:jar:2.6.5:provided
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[INFO] | | | +- commons-cli:commons-cli:jar:1.2:provided
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[INFO] | | | +- xmlenc:xmlenc:jar:0.52:provided
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[INFO] | | | +- commons-httpclient:commons-httpclient:jar:3.1:provided
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[INFO] | | | +- commons-configuration:commons-configuration:jar:1.6:provided
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[INFO] | | | | +- commons-digester:commons-digester:jar:1.8:provided
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[INFO] | | | | | \- commons-beanutils:commons-beanutils:jar:1.7.0:provided
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[INFO] | | | | \- commons-beanutils:commons-beanutils-core:jar:1.8.0:provided
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[INFO] | | | +- org.apache.hadoop:hadoop-auth:jar:2.6.5:provided
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[INFO] | | | | \- org.apache.directory.server:apacheds-kerberos-codec:jar:2.0.0-M15:provided
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[INFO] | | | | +- org.apache.directory.server:apacheds-i18n:jar:2.0.0-M15:provided
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[INFO] | | | | +- org.apache.directory.api:api-asn1-api:jar:1.0.0-M20:provided
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[INFO] | | | | \- org.apache.directory.api:api-util:jar:1.0.0-M20:provided
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[INFO] | | | +- org.apache.curator:curator-client:jar:2.6.0:provided
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[INFO] | | | \- org.htrace:htrace-core:jar:3.0.4:provided
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[INFO] | | +- org.apache.hadoop:hadoop-hdfs:jar:2.6.5:provided
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[INFO] | | | +- org.mortbay.jetty:jetty-util:jar:6.1.26:provided
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[INFO] | | | \- xerces:xercesImpl:jar:2.9.1:provided
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[INFO] | | | \- xml-apis:xml-apis:jar:1.3.04:provided
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[INFO] | | +- org.apache.hadoop:hadoop-mapreduce-client-app:jar:2.6.5:provided
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[INFO] | | | +- org.apache.hadoop:hadoop-mapreduce-client-common:jar:2.6.5:provided
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[INFO] | | | | +- org.apache.hadoop:hadoop-yarn-client:jar:2.6.5:provided
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[INFO] | | | | \- org.apache.hadoop:hadoop-yarn-server-common:jar:2.6.5:provided
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[INFO] | | | \- org.apache.hadoop:hadoop-mapreduce-client-shuffle:jar:2.6.5:provided
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[INFO] | | +- org.apache.hadoop:hadoop-yarn-api:jar:2.6.5:provided
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[INFO] | | +- org.apache.hadoop:hadoop-mapreduce-client-core:jar:2.6.5:provided
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[INFO] | | | \- org.apache.hadoop:hadoop-yarn-common:jar:2.6.5:provided
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[INFO] | | | +- javax.xml.bind:jaxb-api:jar:2.2.2:provided
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[INFO] | | | | \- javax.xml.stream:stax-api:jar:1.0-2:provided
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[INFO] | | | +- org.codehaus.jackson:jackson-jaxrs:jar:1.9.13:provided
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[INFO] | | | \- org.codehaus.jackson:jackson-xc:jar:1.9.13:provided
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[INFO] | | +- org.apache.hadoop:hadoop-mapreduce-client-jobclient:jar:2.6.5:provided
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[INFO] | | \- org.apache.hadoop:hadoop-annotations:jar:2.6.5:provided
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[INFO] | +- org.apache.spark:spark-launcher_2.11:jar:2.2.0:provided
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[INFO] | +- org.apache.spark:spark-network-common_2.11:jar:2.2.0:provided
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[INFO] | | \- org.fusesource.leveldbjni:leveldbjni-all:jar:1.8:provided
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[INFO] | +- org.apache.spark:spark-network-shuffle_2.11:jar:2.2.0:provided
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[INFO] | +- org.apache.spark:spark-unsafe_2.11:jar:2.2.0:provided
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[INFO] | +- net.java.dev.jets3t:jets3t:jar:0.9.3:provided
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[INFO] | | +- org.apache.httpcomponents:httpcore:jar:4.3.3:provided
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[INFO] | | +- org.apache.httpcomponents:httpclient:jar:4.3.6:provided
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[INFO] | | +- javax.activation:activation:jar:1.1.1:provided
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[INFO] | | +- mx4j:mx4j:jar:3.0.2:provided
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[INFO] | | +- javax.mail:mail:jar:1.4.7:provided
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[INFO] | | +- org.bouncycastle:bcprov-jdk15on:jar:1.51:provided
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[INFO] | | \- com.jamesmurty.utils:java-xmlbuilder:jar:1.0:provided
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[INFO] | | \- net.iharder:base64:jar:2.3.8:provided
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[INFO] | +- org.apache.curator:curator-recipes:jar:2.6.0:provided
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[INFO] | | +- org.apache.curator:curator-framework:jar:2.6.0:provided
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[INFO] | | \- org.apache.zookeeper:zookeeper:jar:3.4.6:provided
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[INFO] | +- javax.servlet:javax.servlet-api:jar:3.1.0:provided
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[INFO] | +- org.apache.commons:commons-lang3:jar:3.5:provided
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[INFO] | +- com.google.code.findbugs:jsr305:jar:1.3.9:provided
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[INFO] | +- org.slf4j:slf4j-api:jar:1.7.16:provided
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[INFO] | +- org.slf4j:jul-to-slf4j:jar:1.7.16:provided
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[INFO] | +- org.slf4j:jcl-over-slf4j:jar:1.7.16:provided
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[INFO] | +- org.slf4j:slf4j-log4j12:jar:1.7.16:provided
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[INFO] | +- com.ning:compress-lzf:jar:1.0.3:provided
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[INFO] | +- org.xerial.snappy:snappy-java:jar:1.1.2.6:provided
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[INFO] | +- net.jpountz.lz4:lz4:jar:1.3.0:provided
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[INFO] | +- org.roaringbitmap:RoaringBitmap:jar:0.5.11:provided
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[INFO] | +- commons-net:commons-net:jar:2.2:provided
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[INFO] | +- org.scala-lang:scala-library:jar:2.11.8:provided
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[INFO] | +- org.json4s:json4s-jackson_2.11:jar:3.2.11:provided
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[INFO] | | \- org.json4s:json4s-core_2.11:jar:3.2.11:provided
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[INFO] | | +- org.json4s:json4s-ast_2.11:jar:3.2.11:provided
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[INFO] | | \- org.scala-lang:scalap:jar:2.11.0:provided
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[INFO] | | \- org.scala-lang:scala-compiler:jar:2.11.0:provided
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[INFO] | | +- org.scala-lang.modules:scala-xml_2.11:jar:1.0.1:provided
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[INFO] | | \- org.scala-lang.modules:scala-parser-combinators_2.11:jar:1.0.1:provided
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[INFO] | +- org.glassfish.jersey.core:jersey-client:jar:2.22.2:provided
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[INFO] | | +- javax.ws.rs:javax.ws.rs-api:jar:2.0.1:provided
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[INFO] | | +- org.glassfish.hk2:hk2-api:jar:2.4.0-b34:provided
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[INFO] | | | +- org.glassfish.hk2:hk2-utils:jar:2.4.0-b34:provided
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[INFO] | | | \- org.glassfish.hk2.external:aopalliance-repackaged:jar:2.4.0-b34:provided
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[INFO] | | +- org.glassfish.hk2.external:javax.inject:jar:2.4.0-b34:provided
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[INFO] | | \- org.glassfish.hk2:hk2-locator:jar:2.4.0-b34:provided
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[INFO] | +- org.glassfish.jersey.core:jersey-common:jar:2.22.2:provided
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[INFO] | | +- javax.annotation:javax.annotation-api:jar:1.2:provided
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[INFO] | | +- org.glassfish.jersey.bundles.repackaged:jersey-guava:jar:2.22.2:provided
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[INFO] | | \- org.glassfish.hk2:osgi-resource-locator:jar:1.0.1:provided
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[INFO] | +- org.glassfish.jersey.core:jersey-server:jar:2.22.2:provided
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[INFO] | | +- org.glassfish.jersey.media:jersey-media-jaxb:jar:2.22.2:provided
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[INFO] | | \- javax.validation:validation-api:jar:1.1.0.Final:provided
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[INFO] | +- org.glassfish.jersey.containers:jersey-container-servlet:jar:2.22.2:provided
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[INFO] | +- org.glassfish.jersey.containers:jersey-container-servlet-core:jar:2.22.2:provided
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[INFO] | +- io.netty:netty-all:jar:4.0.43.Final:provided
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[INFO] | +- io.netty:netty:jar:3.9.9.Final:provided
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[INFO] | +- com.clearspring.analytics:stream:jar:2.7.0:provided
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[INFO] | +- io.dropwizard.metrics:metrics-core:jar:3.1.2:provided
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[INFO] | +- io.dropwizard.metrics:metrics-jvm:jar:3.1.2:provided
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[INFO] | +- io.dropwizard.metrics:metrics-json:jar:3.1.2:provided
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[INFO] | +- io.dropwizard.metrics:metrics-graphite:jar:3.1.2:provided
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[INFO] | +- com.fasterxml.jackson.module:jackson-module-scala_2.11:jar:2.6.5:provided
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[INFO] | | +- org.scala-lang:scala-reflect:jar:2.11.7:provided
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[INFO] | | \- com.fasterxml.jackson.module:jackson-module-paranamer:jar:2.6.5:provided
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[INFO] | +- org.apache.ivy:ivy:jar:2.4.0:provided
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[INFO] | +- oro:oro:jar:2.0.8:provided
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[INFO] | +- net.razorvine:pyrolite:jar:4.13:provided
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[INFO] | +- net.sf.py4j:py4j:jar:0.10.4:provided
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[INFO] | +- org.apache.spark:spark-tags_2.11:jar:2.2.0:provided
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[INFO] | +- org.apache.commons:commons-crypto:jar:1.0.0:provided
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[INFO] | \- org.spark-project.spark:unused:jar:1.0.0:provided
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[INFO] +- org.apache.spark:spark-graphx_2.11:jar:2.2.0:provided
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[INFO] | +- org.apache.spark:spark-mllib-local_2.11:jar:2.2.0:provided
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[INFO] | | \- org.scalanlp:breeze_2.11:jar:0.13.1:provided
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[INFO] | | +- org.scalanlp:breeze-macros_2.11:jar:0.13.1:provided
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[INFO] | | +- net.sf.opencsv:opencsv:jar:2.3:provided
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[INFO] | | +- com.github.rwl:jtransforms:jar:2.4.0:provided
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[INFO] | | +- org.spire-math:spire_2.11:jar:0.13.0:provided
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[INFO] | | | +- org.spire-math:spire-macros_2.11:jar:0.13.0:provided
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[INFO] | | | \- org.typelevel:machinist_2.11:jar:0.6.1:provided
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[INFO] | | \- com.chuusai:shapeless_2.11:jar:2.3.2:provided
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[INFO] | | \- org.typelevel:macro-compat_2.11:jar:1.1.1:provided
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[INFO] | +- com.github.fommil.netlib:core:jar:1.1.2:provided
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[INFO] | \- net.sourceforge.f2j:arpack_combined_all:jar:0.1:provided
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[INFO] +- org.apache.spark:spark-sql_2.11:jar:2.2.0:provided
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[INFO] | +- com.univocity:univocity-parsers:jar:2.2.1:provided
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[INFO] | +- org.apache.spark:spark-sketch_2.11:jar:2.2.0:provided
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[INFO] | +- org.apache.spark:spark-catalyst_2.11:jar:2.2.0:provided
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[INFO] | | +- org.codehaus.janino:janino:jar:3.0.0:provided
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[INFO] | | +- org.codehaus.janino:commons-compiler:jar:3.0.0:provided
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[INFO] | | \- org.antlr:antlr4-runtime:jar:4.5.3:provided
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[INFO] | +- org.apache.parquet:parquet-column:jar:1.8.2:provided
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[INFO] | | +- org.apache.parquet:parquet-common:jar:1.8.2:provided
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[INFO] | | \- org.apache.parquet:parquet-encoding:jar:1.8.2:provided
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[INFO] | \- org.apache.parquet:parquet-hadoop:jar:1.8.2:provided
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[INFO] | +- org.apache.parquet:parquet-format:jar:2.3.1:provided
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[INFO] | \- org.apache.parquet:parquet-jackson:jar:1.8.2:provided
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[INFO] +- eu.dnetlib:dnet-openaireplus-mapping-utils:jar:6.2.18:test
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[INFO] | +- com.ximpleware:vtd-xml:jar:2.13.4:test (version selected from constraint [2.12,3.0.0))
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[INFO] | +- commons-codec:commons-codec:jar:1.9:provided
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[INFO] | +- dom4j:dom4j:jar:1.6.1:test (version selected from constraint [1.6.1,1.6.1])
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[INFO] | +- net.sf.supercsv:super-csv:jar:2.4.0:test
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[INFO] | +- eu.dnetlib:cnr-misc-utils:jar:1.0.6-SNAPSHOT:test (version selected from constraint [1.0.0,2.0.0))
|
||||
[INFO] | | +- jaxen:jaxen:jar:1.1.6:test
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[INFO] | | +- saxonica:saxon:jar:9.1.0.8:test
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[INFO] | | +- saxonica:saxon-dom:jar:9.1.0.8:test
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[INFO] | | +- jgrapht:jgrapht:jar:0.7.2:test
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[INFO] | | +- net.sf.ehcache:ehcache:jar:2.8.0:test
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[INFO] | | \- org.springframework:spring-test:jar:4.2.5.RELEASE:test (version selected from constraint [4.2.5.RELEASE,4.2.5.RELEASE])
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[INFO] | | \- org.springframework:spring-core:jar:4.2.5.RELEASE:test
|
||||
[INFO] | +- eu.dnetlib:dnet-hadoop-commons:jar:2.0.2-SNAPSHOT:test (version selected from constraint [2.0.0,3.0.0))
|
||||
[INFO] | | +- org.apache.hadoop:hadoop-core:jar:2.0.0-mr1-cdh4.7.0:test
|
||||
[INFO] | | | +- commons-el:commons-el:jar:1.0:test
|
||||
[INFO] | | | \- hsqldb:hsqldb:jar:1.8.0.10:test
|
||||
[INFO] | | \- org.springframework:spring-beans:jar:4.2.5.RELEASE:test (version selected from constraint [4.2.5.RELEASE,4.2.5.RELEASE])
|
||||
[INFO] | \- eu.dnetlib:dnet-index-solr-common:jar:1.3.1:test (version selected from constraint [1.0.0,1.3.1])
|
||||
[INFO] | \- org.apache.solr:solr-solrj:jar:4.9.0:test
|
||||
[INFO] | +- org.apache.httpcomponents:httpmime:jar:4.3.1:test
|
||||
[INFO] | \- org.noggit:noggit:jar:0.5:test
|
||||
[INFO] \- junit:junit:jar:4.9:test
|
||||
[INFO] \- org.hamcrest:hamcrest-core:jar:1.1:test
|
||||
[INFO] ------------------------------------------------------------------------
|
||||
[INFO] Reactor Summary:
|
||||
[INFO]
|
||||
[INFO] dnet-dedup 3.0.3-SNAPSHOT .......................... SUCCESS [ 1.152 s]
|
||||
[INFO] dnet-pace-core ..................................... SUCCESS [ 0.117 s]
|
||||
[INFO] dnet-dedup-test 3.0.3-SNAPSHOT ..................... SUCCESS [ 1.407 s]
|
||||
[INFO] ------------------------------------------------------------------------
|
||||
[INFO] BUILD SUCCESS
|
||||
[INFO] ------------------------------------------------------------------------
|
||||
[INFO] Total time: 3.216 s
|
||||
[INFO] Finished at: 2019-03-29T15:02:42+01:00
|
||||
[INFO] ------------------------------------------------------------------------
|
||||
|
|
@ -0,0 +1,2 @@
|
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|
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|
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|
|
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|
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|
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|
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|
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|
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
|
||||
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|
||||
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|
||||
|
||||
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|
||||
this.index = index;
|
||||
this.value = value;
|
||||
}
|
||||
|
||||
// @@protoc_insertion_point(enum_scope:eu.dnetlib.data.proto.RelType)
|
||||
}
|
||||
|
||||
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|
||||
implements com.google.protobuf.ProtocolMessageEnum {
|
||||
provision(0, 1),
|
||||
participation(1, 4),
|
||||
outcome(2, 6),
|
||||
similarity(3, 8),
|
||||
publicationDataset(4, 9),
|
||||
affiliation(5, 12),
|
||||
dedup(6, 10),
|
||||
dedupSimilarity(7, 11),
|
||||
supplement(8, 13),
|
||||
part(9, 15),
|
||||
version(10, 16),
|
||||
relationship(11, 17),
|
||||
;
|
||||
|
||||
public static final int provision_VALUE = 1;
|
||||
public static final int participation_VALUE = 4;
|
||||
public static final int outcome_VALUE = 6;
|
||||
public static final int similarity_VALUE = 8;
|
||||
public static final int publicationDataset_VALUE = 9;
|
||||
public static final int affiliation_VALUE = 12;
|
||||
public static final int dedup_VALUE = 10;
|
||||
public static final int dedupSimilarity_VALUE = 11;
|
||||
public static final int supplement_VALUE = 13;
|
||||
public static final int part_VALUE = 15;
|
||||
public static final int version_VALUE = 16;
|
||||
public static final int relationship_VALUE = 17;
|
||||
|
||||
|
||||
public final int getNumber() { return value; }
|
||||
|
||||
public static SubRelType valueOf(int value) {
|
||||
switch (value) {
|
||||
case 1: return provision;
|
||||
case 4: return participation;
|
||||
case 6: return outcome;
|
||||
case 8: return similarity;
|
||||
case 9: return publicationDataset;
|
||||
case 12: return affiliation;
|
||||
case 10: return dedup;
|
||||
case 11: return dedupSimilarity;
|
||||
case 13: return supplement;
|
||||
case 15: return part;
|
||||
case 16: return version;
|
||||
case 17: return relationship;
|
||||
default: return null;
|
||||
}
|
||||
}
|
||||
|
||||
public static com.google.protobuf.Internal.EnumLiteMap<SubRelType>
|
||||
internalGetValueMap() {
|
||||
return internalValueMap;
|
||||
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|
||||
private static com.google.protobuf.Internal.EnumLiteMap<SubRelType>
|
||||
internalValueMap =
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
|
||||
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|
||||
provision, participation, outcome, similarity, publicationDataset, affiliation, dedup, dedupSimilarity, supplement, part, version, relationship,
|
||||
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|
||||
|
||||
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|
||||
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|
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|
||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
|
||||
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|
||||
private final int value;
|
||||
|
||||
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|
||||
this.index = index;
|
||||
this.value = value;
|
||||
}
|
||||
|
||||
// @@protoc_insertion_point(enum_scope:eu.dnetlib.data.proto.SubRelType)
|
||||
}
|
||||
|
||||
|
||||
public static com.google.protobuf.Descriptors.FileDescriptor
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
"\001\n\007RelType\022\032\n\026datasourceOrganization\020\001\022\027" +
|
||||
"\n\023projectOrganization\020\004\022\026\n\022resultOrganiz" +
|
||||
"ation\020\005\022\021\n\rresultProject\020\006\022\020\n\014resultResu" +
|
||||
"lt\020\t\022\034\n\030organizationOrganization\020\013*\315\001\n\nS" +
|
||||
"ubRelType\022\r\n\tprovision\020\001\022\021\n\rparticipatio" +
|
||||
"n\020\004\022\013\n\007outcome\020\006\022\016\n\nsimilarity\020\010\022\026\n\022publ" +
|
||||
"icationDataset\020\t\022\017\n\013affiliation\020\014\022\t\n\005ded" +
|
||||
"up\020\n\022\023\n\017dedupSimilarity\020\013\022\016\n\nsupplement\020" +
|
||||
"\r\022\010\n\004part\020\017\022\013\n\007version\020\020\022\020\n\014relationship",
|
||||
"\020\021B&\n\025eu.dnetlib.data.protoB\rRelTypeProt" +
|
||||
"os"
|
||||
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|
||||
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||||
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||||
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||||
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|
||||
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|
||||
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File diff suppressed because it is too large
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|
|
@ -0,0 +1,109 @@
|
|||
// Generated by the protocol buffer compiler. DO NOT EDIT!
|
||||
// source: SpecialTrust.proto
|
||||
|
||||
package eu.dnetlib.data.proto;
|
||||
|
||||
public final class SpecialTrustProtos {
|
||||
private SpecialTrustProtos() {}
|
||||
public static void registerAllExtensions(
|
||||
com.google.protobuf.ExtensionRegistry registry) {
|
||||
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|
||||
public enum SpecialTrust
|
||||
implements com.google.protobuf.ProtocolMessageEnum {
|
||||
INFINITE(0, 1),
|
||||
NEUTRAL(1, 2),
|
||||
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|
||||
|
||||
public static final int INFINITE_VALUE = 1;
|
||||
public static final int NEUTRAL_VALUE = 2;
|
||||
|
||||
|
||||
public final int getNumber() { return value; }
|
||||
|
||||
public static SpecialTrust valueOf(int value) {
|
||||
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|
||||
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|
||||
case 2: return NEUTRAL;
|
||||
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|
||||
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|
||||
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|
||||
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
internalValueMap =
|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
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||||
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||||
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||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
|
||||
private static final SpecialTrust[] VALUES = {
|
||||
INFINITE, NEUTRAL,
|
||||
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|
||||
|
||||
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|
||||
com.google.protobuf.Descriptors.EnumValueDescriptor desc) {
|
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|
||||
|
||||
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|
||||
private final int value;
|
||||
|
||||
private SpecialTrust(int index, int value) {
|
||||
this.index = index;
|
||||
this.value = value;
|
||||
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|
||||
|
||||
// @@protoc_insertion_point(enum_scope:eu.dnetlib.data.proto.SpecialTrust)
|
||||
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|
||||
|
||||
|
||||
public static com.google.protobuf.Descriptors.FileDescriptor
|
||||
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|
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||||
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|
||||
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|
||||
static {
|
||||
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|
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"\n\022SpecialTrust.proto\022\025eu.dnetlib.data.pr" +
|
||||
"oto*)\n\014SpecialTrust\022\014\n\010INFINITE\020\001\022\013\n\007NEU" +
|
||||
"TRAL\020\002B+\n\025eu.dnetlib.data.protoB\022Special" +
|
||||
"TrustProtos"
|
||||
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|
||||
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|
||||
|
|
@ -0,0 +1,118 @@
|
|||
// Generated by the protocol buffer compiler. DO NOT EDIT!
|
||||
// source: Type.proto
|
||||
|
||||
package eu.dnetlib.data.proto;
|
||||
|
||||
public final class TypeProtos {
|
||||
private TypeProtos() {}
|
||||
public static void registerAllExtensions(
|
||||
com.google.protobuf.ExtensionRegistry registry) {
|
||||
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|
||||
public enum Type
|
||||
implements com.google.protobuf.ProtocolMessageEnum {
|
||||
datasource(0, 10),
|
||||
organization(1, 20),
|
||||
person(2, 30),
|
||||
project(3, 40),
|
||||
result(4, 50),
|
||||
;
|
||||
|
||||
public static final int datasource_VALUE = 10;
|
||||
public static final int organization_VALUE = 20;
|
||||
public static final int person_VALUE = 30;
|
||||
public static final int project_VALUE = 40;
|
||||
public static final int result_VALUE = 50;
|
||||
|
||||
|
||||
public final int getNumber() { return value; }
|
||||
|
||||
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|
||||
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|
||||
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|
||||
case 20: return organization;
|
||||
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|
||||
case 40: return project;
|
||||
case 50: return result;
|
||||
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|
||||
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|
||||
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|
||||
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||||
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|
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|
||||
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|
||||
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|
||||
|
||||
private static final Type[] VALUES = {
|
||||
datasource, organization, person, project, result,
|
||||
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|
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|
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||||
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|
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|
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|
||||
|
||||
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|
||||
private final int value;
|
||||
|
||||
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|
||||
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|
||||
this.value = value;
|
||||
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|
||||
|
||||
// @@protoc_insertion_point(enum_scope:eu.dnetlib.data.proto.Type)
|
||||
}
|
||||
|
||||
|
||||
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|
||||
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||||
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|
||||
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|
||||
static {
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||||
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|
||||
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|
||||
"ype\022\016\n\ndatasource\020\n\022\020\n\014organization\020\024\022\n\n" +
|
||||
"\006person\020\036\022\013\n\007project\020(\022\n\n\006result\0202B#\n\025eu" +
|
||||
".dnetlib.data.protoB\nTypeProtos"
|
||||
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|
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// @@protoc_insertion_point(outer_class_scope)
|
||||
}
|
||||
|
|
@ -0,0 +1,61 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
import "FieldType.proto";
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "DatasourceProtos";
|
||||
|
||||
message Datasource {
|
||||
|
||||
optional Metadata metadata = 2;
|
||||
|
||||
message Metadata {
|
||||
|
||||
// common fields
|
||||
optional Qualifier datasourcetype = 15;
|
||||
optional Qualifier openairecompatibility = 17;
|
||||
|
||||
optional StringField officialname = 1;
|
||||
optional StringField englishname = 2;
|
||||
optional StringField websiteurl = 3;
|
||||
optional StringField logourl = 4;
|
||||
optional StringField contactemail = 5;
|
||||
optional StringField namespaceprefix = 7;
|
||||
|
||||
optional StringField latitude = 18;
|
||||
optional StringField longitude = 19;
|
||||
optional StringField dateofvalidation = 20;
|
||||
optional StringField description = 21;
|
||||
|
||||
repeated StructuredProperty subjects = 45;
|
||||
|
||||
// opendoar specific fields (od*)
|
||||
optional StringField odnumberofitems = 9;
|
||||
optional StringField odnumberofitemsdate = 10;
|
||||
optional StringField odpolicies = 12;
|
||||
|
||||
repeated StringField odlanguages = 13;
|
||||
repeated StringField odcontenttypes = 14;
|
||||
repeated StringField accessinfopackage = 6;
|
||||
|
||||
// re3data fields
|
||||
optional StringField releasestartdate = 31;
|
||||
optional StringField releaseenddate = 32;
|
||||
optional StringField missionstatementurl = 33;
|
||||
optional BoolField dataprovider = 34;
|
||||
optional BoolField serviceprovider = 35;
|
||||
optional StringField databaseaccesstype = 36; // {open, restricted or closed}
|
||||
optional StringField datauploadtype = 37; // {open, restricted or closed}
|
||||
optional StringField databaseaccessrestriction = 38; // {feeRequired, registration, other}
|
||||
optional StringField datauploadrestriction = 39; // {feeRequired, registration, other}
|
||||
optional BoolField versioning = 40;
|
||||
optional StringField citationguidelineurl = 41;
|
||||
optional StringField qualitymanagementkind = 42; // {yes, no, uknown}
|
||||
optional StringField pidsystems = 43;
|
||||
optional StringField certificates = 44;
|
||||
|
||||
repeated KeyValue policies = 46;
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,23 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
import "RelMetadata.proto";
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "DatasourceOrganizationProtos";
|
||||
|
||||
message DatasourceOrganization {
|
||||
|
||||
optional Provision provision = 1;
|
||||
|
||||
message Provision {
|
||||
|
||||
enum RelName {
|
||||
isProvidedBy = 1;
|
||||
provides = 2;
|
||||
}
|
||||
|
||||
required RelMetadata relMetadata = 1;
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,16 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
import "RelMetadata.proto";
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "DedupProtos";
|
||||
|
||||
message Dedup {
|
||||
|
||||
enum RelName {
|
||||
isMergedIn = 1;
|
||||
merges = 2;
|
||||
}
|
||||
|
||||
required RelMetadata relMetadata = 1;
|
||||
}
|
||||
|
|
@ -0,0 +1,16 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
import "RelMetadata.proto";
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "DedupSimilarityProtos";
|
||||
|
||||
message DedupSimilarity {
|
||||
|
||||
enum RelName {
|
||||
isSimilarTo = 1;
|
||||
}
|
||||
|
||||
required RelMetadata relMetadata = 1;
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,104 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "FieldTypeProtos";
|
||||
|
||||
message StringField {
|
||||
|
||||
required string value = 1;
|
||||
optional DataInfo dataInfo = 2;
|
||||
}
|
||||
|
||||
message BoolField {
|
||||
|
||||
required bool value = 1;
|
||||
optional DataInfo dataInfo = 2;
|
||||
}
|
||||
|
||||
message IntField {
|
||||
|
||||
required int32 value = 1;
|
||||
optional DataInfo dataInfo = 2;
|
||||
}
|
||||
|
||||
message StructuredProperty {
|
||||
|
||||
required string value = 1;
|
||||
optional Qualifier qualifier = 2;
|
||||
optional DataInfo dataInfo = 3;
|
||||
}
|
||||
|
||||
// Generic container for identified values, e.g:
|
||||
// <oaf:hostedBy name="Publications at Bielefeld University" id="opendoar::2294"/>
|
||||
// <oaf:collectedFrom name="Publications at Bielefeld University" id="opendoar::2294"/>
|
||||
message KeyValue {
|
||||
|
||||
required string key = 1;
|
||||
optional string value = 2;
|
||||
|
||||
optional DataInfo dataInfo = 3;
|
||||
}
|
||||
|
||||
message Qualifier {
|
||||
|
||||
optional string classid = 1;
|
||||
optional string classname = 2;
|
||||
optional string schemeid = 3;
|
||||
optional string schemename = 4;
|
||||
|
||||
optional DataInfo dataInfo = 5;
|
||||
}
|
||||
|
||||
message DataInfo {
|
||||
|
||||
optional bool invisible = 6 [default = false];
|
||||
optional bool inferred = 1;
|
||||
optional bool deletedbyinference = 2;
|
||||
optional string trust = 3;
|
||||
optional string inferenceprovenance = 4;
|
||||
|
||||
required Qualifier provenanceaction = 5;
|
||||
}
|
||||
|
||||
message OAIProvenance {
|
||||
|
||||
optional OriginDescription originDescription = 1;
|
||||
|
||||
message OriginDescription {
|
||||
|
||||
optional string harvestDate = 1;
|
||||
optional bool altered = 2 [default = true];
|
||||
|
||||
optional string baseURL = 3;
|
||||
optional string identifier = 4;
|
||||
optional string datestamp = 5;
|
||||
optional string metadataNamespace = 6;
|
||||
|
||||
optional OriginDescription originDescription = 7;
|
||||
}
|
||||
}
|
||||
|
||||
message ExtraInfo {
|
||||
|
||||
required string name = 1;
|
||||
required string typology = 2;
|
||||
required string provenance = 3;
|
||||
optional string trust = 4;
|
||||
|
||||
// json containing a Citation or Statistics
|
||||
optional string value = 5;
|
||||
|
||||
}
|
||||
|
||||
message Author {
|
||||
|
||||
required string fullname = 1;
|
||||
|
||||
optional string name = 2;
|
||||
optional string surname = 3;
|
||||
|
||||
required int32 rank = 4;
|
||||
|
||||
repeated KeyValue pid = 5;
|
||||
repeated StringField affiliation = 6;
|
||||
}
|
||||
|
|
@ -0,0 +1,9 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "KindProtos";
|
||||
|
||||
enum Kind {
|
||||
entity = 1;
|
||||
relation = 2;
|
||||
}
|
||||
|
|
@ -0,0 +1,97 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
import "Kind.proto";
|
||||
import "FieldType.proto";
|
||||
|
||||
// for Oafentity
|
||||
import "Type.proto";
|
||||
import "Datasource.proto";
|
||||
import "Organization.proto";
|
||||
import "Project.proto";
|
||||
import "Result.proto";
|
||||
|
||||
import "Person.proto";
|
||||
|
||||
// for OafRel
|
||||
import "RelType.proto";
|
||||
import "Datasource_Organization.proto";
|
||||
import "Project_Organization.proto";
|
||||
import "Result_Organization.proto";
|
||||
import "Result_Project.proto";
|
||||
import "Result_Result.proto";
|
||||
import "Organization_Organization.proto";
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "OafProtos";
|
||||
|
||||
message Oaf {
|
||||
required Kind kind = 1;
|
||||
|
||||
optional OafEntity entity = 2;
|
||||
optional OafRel rel = 3;
|
||||
|
||||
optional DataInfo dataInfo = 4;
|
||||
|
||||
// used to mark the last update time of this object
|
||||
optional sfixed64 lastupdatetimestamp = 5;
|
||||
}
|
||||
|
||||
message OafEntity {
|
||||
required Type type = 1;
|
||||
required string id = 12;
|
||||
|
||||
repeated string originalId = 8;
|
||||
repeated KeyValue collectedfrom = 9;
|
||||
|
||||
repeated StructuredProperty pid = 10;
|
||||
optional string dateofcollection = 11;
|
||||
optional string dateoftransformation = 13;
|
||||
|
||||
/* Any relation that we want to bundle together with this entity.
|
||||
It's intended to be used only in temporary values in map/red jobs (sequence files, ...)
|
||||
and never persisted values stored in HBase. */
|
||||
repeated OafRel cachedRel = 2;
|
||||
repeated Oaf cachedOafRel = 18;
|
||||
|
||||
optional Datasource datasource = 3;
|
||||
optional Organization organization = 4;
|
||||
optional Project project = 6;
|
||||
optional Result result = 7;
|
||||
|
||||
optional Person person = 5;
|
||||
|
||||
repeated OafEntity children = 16;
|
||||
|
||||
repeated ExtraInfo extraInfo = 15;
|
||||
|
||||
optional OAIProvenance oaiprovenance = 17;
|
||||
}
|
||||
|
||||
|
||||
message OafRel {
|
||||
required RelType relType = 1;
|
||||
required SubRelType subRelType = 19;
|
||||
required string relClass = 20; // one among the SubRel names, e.g. Provision.RelName.isProvidedBy
|
||||
|
||||
required string source = 2;
|
||||
required string target = 3;
|
||||
|
||||
/* if true then is a "child" */
|
||||
required bool child = 4;
|
||||
|
||||
optional OafEntity cachedTarget = 5;
|
||||
|
||||
// needed to have more information that is not included in cachedTarget.
|
||||
optional Oaf cachedOafTarget = 8;
|
||||
|
||||
// Datamodel rels
|
||||
optional DatasourceOrganization datasourceOrganization = 6;
|
||||
optional ProjectOrganization projectOrganization = 9;
|
||||
optional ResultOrganization resultOrganization = 10;
|
||||
optional ResultProject resultProject = 11;
|
||||
optional ResultResult resultResult = 16;
|
||||
optional OrganizationOrganization organizationOrganization = 17;
|
||||
|
||||
repeated KeyValue collectedfrom = 21;
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,33 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
import "FieldType.proto";
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "OrganizationProtos";
|
||||
|
||||
message Organization {
|
||||
|
||||
optional Metadata metadata = 2;
|
||||
|
||||
message Metadata {
|
||||
optional StringField legalshortname = 1;
|
||||
optional StringField legalname = 2;
|
||||
repeated StringField alternativeNames = 17;
|
||||
optional StringField websiteurl = 3;
|
||||
optional StringField logourl = 4;
|
||||
optional StringField eclegalbody = 5;
|
||||
optional StringField eclegalperson = 6;
|
||||
optional StringField ecnonprofit = 7;
|
||||
optional StringField ecresearchorganization = 8;
|
||||
optional StringField echighereducation = 9;
|
||||
optional StringField ecinternationalorganizationeurinterests = 10;
|
||||
optional StringField ecinternationalorganization = 11;
|
||||
optional StringField ecenterprise = 12;
|
||||
optional StringField ecsmevalidated = 13;
|
||||
optional StringField ecnutscode = 14;
|
||||
|
||||
optional Qualifier country = 16;
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,15 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
import "RelMetadata.proto";
|
||||
import "Dedup.proto";
|
||||
import "DedupSimilarity.proto";
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "OrganizationOrganizationProtos";
|
||||
|
||||
message OrganizationOrganization {
|
||||
|
||||
optional Dedup dedup = 1;
|
||||
optional DedupSimilarity dedupSimilarity = 2;
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,25 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
import "FieldType.proto";
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "PersonProtos";
|
||||
|
||||
message Person {
|
||||
|
||||
optional Metadata metadata = 2;
|
||||
|
||||
message Metadata {
|
||||
required string fullname = 1;
|
||||
optional string firstname = 2;
|
||||
optional string lastname = 3;
|
||||
required string pubID = 4;
|
||||
optional string pubDOI = 5;
|
||||
optional string orcid = 6;
|
||||
required int32 rank = 7;
|
||||
|
||||
repeated string coauthors = 8;
|
||||
repeated double topics = 9;
|
||||
required string area = 10;
|
||||
}
|
||||
}
|
||||
|
|
@ -0,0 +1,42 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
import "FieldType.proto";
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "ProjectProtos";
|
||||
|
||||
message Project {
|
||||
|
||||
optional Metadata metadata = 2;
|
||||
|
||||
message Metadata {
|
||||
|
||||
optional StringField websiteurl = 1;
|
||||
optional StringField code = 2;
|
||||
optional StringField acronym = 3;
|
||||
optional StringField title = 4;
|
||||
optional StringField startdate = 5;
|
||||
optional StringField enddate = 6;
|
||||
optional StringField callidentifier = 7;
|
||||
optional StringField keywords = 8;
|
||||
optional StringField duration = 9;
|
||||
optional StringField ecsc39 = 10;
|
||||
optional StringField oamandatepublications = 11;
|
||||
optional StringField ecarticle29_3 = 12;
|
||||
repeated StructuredProperty subjects = 14;
|
||||
|
||||
repeated StringField fundingtree = 15;
|
||||
|
||||
optional Qualifier contracttype = 13;
|
||||
|
||||
optional StringField optional1 = 16;
|
||||
optional StringField optional2 = 17;
|
||||
optional StringField jsonextrainfo = 18;
|
||||
|
||||
optional StringField contactfullname = 19;
|
||||
optional StringField contactfax = 20;
|
||||
optional StringField contactphone = 21;
|
||||
optional StringField contactemail = 22;
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,23 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
import "RelMetadata.proto";
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "ProjectOrganizationProtos";
|
||||
|
||||
message ProjectOrganization {
|
||||
|
||||
optional Participation participation = 1;
|
||||
|
||||
message Participation {
|
||||
|
||||
enum RelName {
|
||||
isParticipant = 1;
|
||||
hasParticipant = 2;
|
||||
}
|
||||
|
||||
required RelMetadata relMetadata = 1;
|
||||
optional string participantnumber = 2;
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,15 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
import "FieldType.proto";
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "RelMetadataProtos";
|
||||
|
||||
message RelMetadata {
|
||||
|
||||
optional Qualifier semantics = 1;
|
||||
|
||||
optional string startdate = 3;
|
||||
optional string enddate = 4;
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,36 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "RelTypeProtos";
|
||||
|
||||
enum RelType {
|
||||
|
||||
// Datamodel rels
|
||||
datasourceOrganization = 1;
|
||||
projectOrganization = 4;
|
||||
resultOrganization = 5;
|
||||
resultProject = 6;
|
||||
resultResult = 9;
|
||||
organizationOrganization = 11;
|
||||
|
||||
}
|
||||
|
||||
enum SubRelType {
|
||||
|
||||
provision = 1; // datasourceOrganization
|
||||
participation = 4; // projectOrganization
|
||||
outcome = 6; // resultProject
|
||||
similarity = 8; // resultResult
|
||||
publicationDataset = 9; // resultResult
|
||||
affiliation = 12; // resultOrganizaiton
|
||||
|
||||
dedup = 10; // resultResult | organizationOrganization
|
||||
dedupSimilarity = 11; // resultResult | organizationOrganization
|
||||
|
||||
supplement = 13; // resultResult
|
||||
part = 15; // resultResult
|
||||
|
||||
version = 16; // resultResult
|
||||
|
||||
relationship = 17; // catch all
|
||||
}
|
||||
|
|
@ -0,0 +1,128 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
import "FieldType.proto";
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "ResultProtos";
|
||||
|
||||
message Result {
|
||||
|
||||
optional Metadata metadata = 2;
|
||||
|
||||
repeated Instance instance = 6;
|
||||
|
||||
repeated ExternalReference externalReference = 7;
|
||||
|
||||
message Metadata {
|
||||
|
||||
repeated Author author = 40;
|
||||
|
||||
// resulttype allows subclassing results into publications | datasets | software
|
||||
optional Qualifier resulttype = 8;
|
||||
|
||||
// common fields
|
||||
optional Qualifier language = 12;
|
||||
repeated Qualifier country = 33;
|
||||
|
||||
repeated StructuredProperty subject = 1;
|
||||
repeated StructuredProperty title = 2;
|
||||
repeated StructuredProperty relevantdate = 3;
|
||||
|
||||
repeated StringField description = 25;
|
||||
optional StringField dateofacceptance = 4;
|
||||
optional StringField publisher = 5;
|
||||
optional StringField embargoenddate = 6;
|
||||
repeated StringField source = 27;
|
||||
repeated StringField fulltext = 29; // remove candidate
|
||||
repeated StringField format = 21;
|
||||
repeated StringField contributor = 30;
|
||||
optional Qualifier resourcetype = 19;
|
||||
repeated StringField coverage = 43;
|
||||
|
||||
repeated Context context = 28;
|
||||
|
||||
// publication specific
|
||||
optional Journal journal = 18;
|
||||
|
||||
// dataset specific
|
||||
optional StringField storagedate = 9;
|
||||
optional StringField device = 26;
|
||||
optional StringField size = 20;
|
||||
optional StringField version = 22;
|
||||
optional StringField lastmetadataupdate = 23;
|
||||
optional StringField metadataversionnumber = 24;
|
||||
repeated GeoLocation geolocation = 44;
|
||||
|
||||
// software specific
|
||||
repeated StringField documentationUrl = 35;
|
||||
repeated StructuredProperty license = 36;
|
||||
optional StringField codeRepositoryUrl = 38;
|
||||
optional Qualifier programmingLanguage = 39;
|
||||
|
||||
// other research products specifics
|
||||
repeated StringField contactperson = 45;
|
||||
repeated StringField contactgroup = 41;
|
||||
repeated StringField tool = 42;
|
||||
|
||||
}
|
||||
|
||||
message Journal {
|
||||
optional string name = 1;
|
||||
optional string issnPrinted = 2;
|
||||
optional string issnOnline = 3;
|
||||
optional string issnLinking = 4;
|
||||
|
||||
optional string ep = 6;
|
||||
optional string iss = 7;
|
||||
optional string sp = 8;
|
||||
optional string vol = 9;
|
||||
|
||||
optional string edition = 10;
|
||||
optional string conferenceplace = 11;
|
||||
optional string conferencedate = 12;
|
||||
|
||||
optional DataInfo dataInfo = 5;
|
||||
}
|
||||
|
||||
// <concept id="egi::vo::alice" />
|
||||
message Context {
|
||||
required string id = 1;
|
||||
repeated DataInfo dataInfo = 2;
|
||||
}
|
||||
|
||||
message Instance {
|
||||
|
||||
optional StringField license = 6;
|
||||
optional Qualifier accessright = 3;
|
||||
optional Qualifier instancetype = 4;
|
||||
|
||||
optional KeyValue hostedby = 5;
|
||||
repeated string url = 9;
|
||||
|
||||
// other research products specific
|
||||
optional string distributionlocation = 12;
|
||||
|
||||
optional KeyValue collectedfrom = 10;
|
||||
optional StringField dateofacceptance = 11;
|
||||
}
|
||||
|
||||
message ExternalReference {
|
||||
|
||||
optional string sitename = 1; // source
|
||||
optional string label = 2; // title
|
||||
optional string url = 3; // text()
|
||||
optional string description = 4; // ?? not mapped yet ??
|
||||
optional Qualifier qualifier = 5; // type
|
||||
optional string refidentifier = 6; // site internal identifier
|
||||
optional string query = 7; // maps the oaf:reference/@query attribute
|
||||
optional DataInfo dataInfo = 8; // ExternalReferences might be also inferred
|
||||
}
|
||||
|
||||
message GeoLocation {
|
||||
|
||||
optional string point = 1;
|
||||
optional string box = 2;
|
||||
optional string place = 3;
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,23 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
import "RelMetadata.proto";
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "ResultOrganizationProtos";
|
||||
|
||||
message ResultOrganization {
|
||||
|
||||
optional Affiliation affiliation = 1;
|
||||
|
||||
message Affiliation {
|
||||
|
||||
enum RelName {
|
||||
isAuthorInstitutionOf = 1; // Organization --> Result
|
||||
hasAuthorInstitution = 2; // Result --> Organization
|
||||
}
|
||||
|
||||
required RelMetadata relMetadata = 1;
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,23 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
import "RelMetadata.proto";
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "ResultProjectProtos";
|
||||
|
||||
message ResultProject {
|
||||
|
||||
optional Outcome outcome = 1;
|
||||
|
||||
message Outcome {
|
||||
|
||||
enum RelName {
|
||||
isProducedBy = 1;
|
||||
produces = 2;
|
||||
}
|
||||
|
||||
required RelMetadata relMetadata = 1;
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,94 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
import "RelMetadata.proto";
|
||||
import "Dedup.proto";
|
||||
import "DedupSimilarity.proto";
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "ResultResultProtos";
|
||||
|
||||
message ResultResult {
|
||||
|
||||
//choice of the possible subtypes
|
||||
optional Similarity similarity = 2;
|
||||
optional PublicationDataset publicationDataset = 3;
|
||||
optional Dedup dedup = 4;
|
||||
optional DedupSimilarity dedupSimilarity = 5;
|
||||
|
||||
optional Supplement supplement = 6;
|
||||
optional Part part = 7;
|
||||
|
||||
optional Relationship relationship = 8;
|
||||
|
||||
optional SoftwareSoftware softwareSoftware = 9;
|
||||
|
||||
message Similarity {
|
||||
|
||||
enum RelName {
|
||||
isAmongTopNSimilarDocuments = 1;
|
||||
hasAmongTopNSimilarDocuments = 2;
|
||||
}
|
||||
|
||||
required RelMetadata relMetadata = 1;
|
||||
|
||||
// level of similarity: coefficient from [0, 1] range,
|
||||
// the greater the number, the more similar the documents
|
||||
optional float similarity = 2;
|
||||
|
||||
enum Type {
|
||||
STANDARD = 1;
|
||||
WEBUSAGE = 2;
|
||||
}
|
||||
|
||||
// similarity type
|
||||
optional Type type = 3 [default = STANDARD];
|
||||
}
|
||||
|
||||
message PublicationDataset {
|
||||
|
||||
enum RelName {
|
||||
isRelatedTo = 1;
|
||||
}
|
||||
|
||||
required RelMetadata relMetadata = 1;
|
||||
}
|
||||
|
||||
message Supplement {
|
||||
|
||||
enum RelName {
|
||||
isSupplementTo = 1;
|
||||
isSupplementedBy = 2;
|
||||
}
|
||||
|
||||
required RelMetadata relMetadata = 1;
|
||||
}
|
||||
|
||||
message Part {
|
||||
|
||||
enum RelName {
|
||||
isPartOf = 1;
|
||||
hasPart = 2;
|
||||
}
|
||||
|
||||
required RelMetadata relMetadata = 1;
|
||||
}
|
||||
|
||||
message SoftwareSoftware {
|
||||
|
||||
enum RelName {
|
||||
isVersionOf = 1;
|
||||
}
|
||||
|
||||
required RelMetadata relMetadata = 1;
|
||||
}
|
||||
|
||||
message Relationship {
|
||||
|
||||
enum RelName {
|
||||
isRelatedTo = 1;
|
||||
}
|
||||
|
||||
required RelMetadata relMetadata = 1;
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,9 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "SpecialTrustProtos";
|
||||
|
||||
enum SpecialTrust {
|
||||
INFINITE = 1;
|
||||
NEUTRAL = 2;
|
||||
}
|
||||
|
|
@ -0,0 +1,13 @@
|
|||
package eu.dnetlib.data.proto;
|
||||
|
||||
option java_package = "eu.dnetlib.data.proto";
|
||||
option java_outer_classname = "TypeProtos";
|
||||
|
||||
// entity tags are used as rowkey prefixes on hbase
|
||||
enum Type {
|
||||
datasource = 10;
|
||||
organization = 20;
|
||||
person = 30;
|
||||
project = 40;
|
||||
result = 50;
|
||||
}
|
||||
|
|
@ -64,11 +64,16 @@
|
|||
<groupId>com.fasterxml.jackson.core</groupId>
|
||||
<artifactId>jackson-databind</artifactId>
|
||||
</dependency>
|
||||
|
||||
<dependency>
|
||||
<groupId>org.codehaus.jackson</groupId>
|
||||
<artifactId>jackson-mapper-asl</artifactId>
|
||||
</dependency>
|
||||
|
||||
<dependency>
|
||||
<groupId>org.apache.commons</groupId>
|
||||
<artifactId>commons-math3</artifactId>
|
||||
</dependency>
|
||||
|
||||
</dependencies>
|
||||
|
||||
|
|
|
|||
Binary file not shown.
|
|
@ -1,16 +1,15 @@
|
|||
package eu.dnetlib.pace.clustering;
|
||||
|
||||
import java.util.*;
|
||||
import java.util.function.Function;
|
||||
import java.util.function.Predicate;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
import com.google.common.collect.Sets;
|
||||
|
||||
import eu.dnetlib.pace.common.AbstractPaceFunctions;
|
||||
import eu.dnetlib.pace.model.Field;
|
||||
import org.apache.commons.lang.StringUtils;
|
||||
|
||||
import java.util.Collection;
|
||||
import java.util.HashSet;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
public abstract class AbstractClusteringFunction extends AbstractPaceFunctions implements ClusteringFunction {
|
||||
|
||||
protected Map<String, Integer> params;
|
||||
|
|
@ -26,7 +25,7 @@ public abstract class AbstractClusteringFunction extends AbstractPaceFunctions i
|
|||
return fields.stream().filter(f -> !f.isEmpty())
|
||||
.map(Field::stringValue)
|
||||
.map(this::normalize)
|
||||
.map(s -> filterStopWords(s, stopwords))
|
||||
.map(s -> filterAllStopWords(s))
|
||||
.map(this::doApply)
|
||||
.map(c -> filterBlacklisted(c, ngramBlacklist))
|
||||
.flatMap(c -> c.stream())
|
||||
|
|
|
|||
|
|
@ -1,25 +1,17 @@
|
|||
package eu.dnetlib.pace.clustering;
|
||||
|
||||
import java.io.Serializable;
|
||||
import com.google.common.collect.Sets;
|
||||
import eu.dnetlib.pace.common.AbstractPaceFunctions;
|
||||
import eu.dnetlib.pace.model.Field;
|
||||
import eu.dnetlib.pace.model.Person;
|
||||
import org.apache.commons.lang.StringUtils;
|
||||
|
||||
import java.util.Collection;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
import java.util.Set;
|
||||
|
||||
import eu.dnetlib.pace.model.FieldList;
|
||||
import eu.dnetlib.pace.model.FieldValue;
|
||||
import org.apache.commons.lang.StringUtils;
|
||||
|
||||
import com.google.common.base.Splitter;
|
||||
import com.google.common.collect.Iterables;
|
||||
import com.google.common.collect.Sets;
|
||||
|
||||
import eu.dnetlib.pace.common.AbstractPaceFunctions;
|
||||
import eu.dnetlib.pace.model.Field;
|
||||
import eu.dnetlib.pace.model.gt.Author;
|
||||
import eu.dnetlib.pace.model.gt.GTAuthor;
|
||||
|
||||
@ClusteringClass("personclustering")
|
||||
@ClusteringClass("personClustering")
|
||||
public class PersonClustering extends AbstractPaceFunctions implements ClusteringFunction {
|
||||
|
||||
private Map<String, Integer> params;
|
||||
|
|
@ -36,14 +28,13 @@ public class PersonClustering extends AbstractPaceFunctions implements Clusterin
|
|||
|
||||
for (final Field f : fields) {
|
||||
|
||||
final GTAuthor gta = GTAuthor.fromOafJson(f.stringValue());
|
||||
final Person person = new Person(f.stringValue(), false);
|
||||
|
||||
final Author a = gta.getAuthor();
|
||||
if (a.isWellFormed()) {
|
||||
hashes.add(firstLC(a.getFirstname()) + a.getSecondnames().toLowerCase());
|
||||
if (StringUtils.isNotBlank(person.getNormalisedFirstName()) && StringUtils.isNotBlank(person.getNormalisedSurname())) {
|
||||
hashes.add(firstLC(person.getNormalisedFirstName()) + person.getNormalisedSurname().toLowerCase());
|
||||
} else {
|
||||
for (final String token1 : tokens(a.getFullname())) {
|
||||
for (final String token2 : tokens(a.getFullname())) {
|
||||
for (final String token1 : tokens(f.stringValue(), MAX_TOKENS)) {
|
||||
for (final String token2 : tokens(f.stringValue(), MAX_TOKENS)) {
|
||||
if (!token1.equals(token2)) {
|
||||
hashes.add(firstLC(token1) + token2);
|
||||
}
|
||||
|
|
@ -55,13 +46,31 @@ public class PersonClustering extends AbstractPaceFunctions implements Clusterin
|
|||
return hashes;
|
||||
}
|
||||
|
||||
private String firstLC(final String s) {
|
||||
return StringUtils.substring(s, 0, 1).toLowerCase();
|
||||
}
|
||||
|
||||
private Iterable<String> tokens(final String s) {
|
||||
return Iterables.limit(Splitter.on(" ").omitEmptyStrings().trimResults().split(s), MAX_TOKENS);
|
||||
}
|
||||
// @Override
|
||||
// public Collection<String> apply(final List<Field> fields) {
|
||||
// final Set<String> hashes = Sets.newHashSet();
|
||||
//
|
||||
// for (final Field f : fields) {
|
||||
//
|
||||
// final GTAuthor gta = GTAuthor.fromOafJson(f.stringValue());
|
||||
//
|
||||
// final Author a = gta.getAuthor();
|
||||
//
|
||||
// if (StringUtils.isNotBlank(a.getFirstname()) && StringUtils.isNotBlank(a.getSecondnames())) {
|
||||
// hashes.add(firstLC(a.getFirstname()) + a.getSecondnames().toLowerCase());
|
||||
// } else {
|
||||
// for (final String token1 : tokens(f.stringValue(), MAX_TOKENS)) {
|
||||
// for (final String token2 : tokens(f.stringValue(), MAX_TOKENS)) {
|
||||
// if (!token1.equals(token2)) {
|
||||
// hashes.add(firstLC(token1) + token2);
|
||||
// }
|
||||
// }
|
||||
// }
|
||||
// }
|
||||
// }
|
||||
//
|
||||
// return hashes;
|
||||
// }
|
||||
|
||||
@Override
|
||||
public Map<String, Integer> getParams() {
|
||||
|
|
|
|||
|
|
@ -1,6 +1,7 @@
|
|||
package eu.dnetlib.pace.common;
|
||||
|
||||
import com.google.common.base.Joiner;
|
||||
import com.google.common.base.Splitter;
|
||||
import com.google.common.collect.Iterables;
|
||||
import com.google.common.collect.Lists;
|
||||
import com.google.common.collect.Sets;
|
||||
|
|
@ -26,7 +27,12 @@ import java.util.regex.Pattern;
|
|||
*/
|
||||
public abstract class AbstractPaceFunctions {
|
||||
|
||||
protected static Set<String> stopwords = loadFromClasspath("/eu/dnetlib/pace/config/stopwords_en.txt");
|
||||
protected static Set<String> stopwords_en = loadFromClasspath("/eu/dnetlib/pace/config/stopwords_en.txt");
|
||||
protected static Set<String> stopwords_de = loadFromClasspath("/eu/dnetlib/pace/config/stopwords_de.txt");
|
||||
protected static Set<String> stopwords_es = loadFromClasspath("/eu/dnetlib/pace/config/stopwords_es.txt");
|
||||
protected static Set<String> stopwords_fr = loadFromClasspath("/eu/dnetlib/pace/config/stopwords_fr.txt");
|
||||
protected static Set<String> stopwords_it = loadFromClasspath("/eu/dnetlib/pace/config/stopwords_it.txt");
|
||||
protected static Set<String> stopwords_pt = loadFromClasspath("/eu/dnetlib/pace/config/stopwords_pt.txt");
|
||||
|
||||
protected static Set<String> ngramBlacklist = loadFromClasspath("/eu/dnetlib/pace/config/ngram_blacklist.txt");
|
||||
|
||||
|
|
@ -41,8 +47,9 @@ public abstract class AbstractPaceFunctions {
|
|||
}
|
||||
|
||||
protected String cleanup(final String s) {
|
||||
final String s1 = nfd(s);
|
||||
final String s2 = fixAliases(s1);
|
||||
final String s0 = s.toLowerCase();
|
||||
final String s1 = fixAliases(s0);
|
||||
final String s2 = nfd(s1);
|
||||
final String s3 = s2.replaceAll("–", " ");
|
||||
final String s4 = s3.replaceAll("&", " ");
|
||||
final String s5 = s4.replaceAll(""", " ");
|
||||
|
|
@ -139,6 +146,18 @@ public abstract class AbstractPaceFunctions {
|
|||
return sb.toString().trim();
|
||||
}
|
||||
|
||||
protected String filterAllStopWords(String s) {
|
||||
|
||||
s = filterStopWords(s, stopwords_en);
|
||||
s = filterStopWords(s, stopwords_de);
|
||||
s = filterStopWords(s, stopwords_it);
|
||||
s = filterStopWords(s, stopwords_fr);
|
||||
s = filterStopWords(s, stopwords_pt);
|
||||
s = filterStopWords(s, stopwords_es);
|
||||
|
||||
return s;
|
||||
}
|
||||
|
||||
protected Collection<String> filterBlacklisted(final Collection<String> set, final Set<String> ngramBlacklist) {
|
||||
final Set<String> newset = Sets.newLinkedHashSet();
|
||||
for (final String s : set) {
|
||||
|
|
@ -171,7 +190,7 @@ public abstract class AbstractPaceFunctions {
|
|||
String[] line = s.split(";");
|
||||
String value = line[0];
|
||||
for (String key: line){
|
||||
m.put(fixAliases(key),value);
|
||||
m.put(fixAliases(key).toLowerCase(),value);
|
||||
}
|
||||
}
|
||||
} catch (final Throwable e){
|
||||
|
|
@ -191,17 +210,50 @@ public abstract class AbstractPaceFunctions {
|
|||
return sb.toString().trim();
|
||||
}
|
||||
|
||||
//TODO remove also codes of the cities
|
||||
public String removeCodes(String s) {
|
||||
final String regex = "\\bkey::[0-9]*\\b";
|
||||
return s.replaceAll(regex, "").trim();
|
||||
public String keywordsToCode(String s1, Map<String, String> translationMap, int windowSize){
|
||||
|
||||
List<String> tokens = Arrays.asList(s1.split(" "));
|
||||
|
||||
if (tokens.size()<windowSize)
|
||||
windowSize = tokens.size();
|
||||
|
||||
int length = windowSize;
|
||||
|
||||
while (length != 0) {
|
||||
|
||||
for (int i = 0; i<=tokens.size()-length; i++){
|
||||
String candidate = Joiner.on(" ").join(tokens.subList(i, i + length));
|
||||
if (translationMap.containsKey(candidate)) {
|
||||
s1 = (" " + s1 + " ").replaceAll(" " + candidate + " ", " " + translationMap.get(candidate) + " ");
|
||||
}
|
||||
}
|
||||
length-=1;
|
||||
}
|
||||
|
||||
return s1;
|
||||
}
|
||||
|
||||
|
||||
public String removeCodes(String s) {
|
||||
final String regexKey = "\\bkey::[0-9]*\\b";
|
||||
final String regexCity = "\\bcity::[0-9]*\\b";
|
||||
return s.replaceAll(regexKey, "").replaceAll(regexCity, "").trim();
|
||||
}
|
||||
|
||||
public double keywordsCompare(String s1, String s2){
|
||||
|
||||
List<String> keywords1 = getKeywords(s1);
|
||||
List<String> keywords2 = getKeywords(s2);
|
||||
int longer = (keywords1.size()>keywords2.size())?keywords1.size():keywords2.size();
|
||||
|
||||
if (getKeywords(s1).isEmpty() || getKeywords(s2).isEmpty())
|
||||
return 1.0;
|
||||
else
|
||||
return (double)CollectionUtils.intersection(getKeywords(s1),getKeywords(s2)).size()/(double)longer;
|
||||
}
|
||||
|
||||
//check if 2 strings have same keywords
|
||||
public boolean sameKeywords(String s1, String s2){
|
||||
//all keywords in common
|
||||
//return getKeywords(s1).containsAll(getKeywords(s2)) && getKeywords(s2).containsAll(getKeywords(s1));
|
||||
|
||||
//at least 1 keyword in common
|
||||
if (getKeywords(s1).isEmpty() || getKeywords(s2).isEmpty())
|
||||
return true;
|
||||
|
|
@ -209,11 +261,36 @@ public abstract class AbstractPaceFunctions {
|
|||
return CollectionUtils.intersection(getKeywords(s1),getKeywords(s2)).size()>0;
|
||||
}
|
||||
|
||||
//returns true if at least 1 city is in common
|
||||
//returns true if a name has no cities
|
||||
public boolean sameCity(String s1, String s2){
|
||||
|
||||
if (getCities(s1).isEmpty() || getCities(s2).isEmpty())
|
||||
return true;
|
||||
else
|
||||
return CollectionUtils.intersection(getCities(s1), getCities(s2)).size()>0;
|
||||
}
|
||||
|
||||
//get the list of keywords in a string
|
||||
public List<String> getCities(String s) {
|
||||
|
||||
final String regex = "\\bcity::[0-9]*\\b";
|
||||
|
||||
Pattern p = Pattern.compile(regex, Pattern.MULTILINE);
|
||||
Matcher m = p.matcher(s);
|
||||
List<String> codes = new ArrayList<>();
|
||||
while (m.find()) {
|
||||
codes.add(m.group(0));
|
||||
for (int i = 1; i <= m.groupCount(); i++) {
|
||||
codes.add(m.group(0));
|
||||
}
|
||||
}
|
||||
return codes;
|
||||
}
|
||||
|
||||
//get the list of keywords in a string
|
||||
public List<String> getKeywords(String s) {
|
||||
|
||||
// final String regex = " \\d+ ";
|
||||
|
||||
final String regex = "\\bkey::[0-9]*\\b";
|
||||
|
||||
Pattern p = Pattern.compile(regex, Pattern.MULTILINE);
|
||||
|
|
@ -228,4 +305,13 @@ public abstract class AbstractPaceFunctions {
|
|||
return codes;
|
||||
}
|
||||
|
||||
protected String firstLC(final String s) {
|
||||
return StringUtils.substring(s, 0, 1).toLowerCase();
|
||||
}
|
||||
|
||||
protected Iterable<String> tokens(final String s, final int maxTokens) {
|
||||
return Iterables.limit(Splitter.on(" ").omitEmptyStrings().trimResults().split(s), maxTokens);
|
||||
}
|
||||
|
||||
|
||||
}
|
||||
|
|
|
|||
|
|
@ -1,20 +1,21 @@
|
|||
package eu.dnetlib.pace.config;
|
||||
|
||||
import java.io.Serializable;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
import com.google.common.collect.Lists;
|
||||
import com.google.common.collect.Maps;
|
||||
import eu.dnetlib.pace.condition.ConditionAlgo;
|
||||
import eu.dnetlib.pace.model.ClusteringDef;
|
||||
import eu.dnetlib.pace.model.CondDef;
|
||||
import eu.dnetlib.pace.model.FieldDef;
|
||||
import eu.dnetlib.pace.model.TreeNodeDef;
|
||||
import eu.dnetlib.pace.util.PaceResolver;
|
||||
import org.apache.commons.collections.CollectionUtils;
|
||||
import org.codehaus.jackson.annotate.JsonIgnore;
|
||||
|
||||
import java.io.Serializable;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
public class PaceConfig implements Serializable {
|
||||
|
||||
private List<FieldDef> model;
|
||||
|
|
@ -23,6 +24,8 @@ public class PaceConfig implements Serializable {
|
|||
private List<ClusteringDef> clustering;
|
||||
private Map<String, List<String>> blacklists;
|
||||
|
||||
private Map<String, TreeNodeDef> decisionTree;
|
||||
|
||||
private Map<String, FieldDef> modelMap;
|
||||
|
||||
public static PaceResolver paceResolver;
|
||||
|
|
@ -58,6 +61,14 @@ public class PaceConfig implements Serializable {
|
|||
return conditions;
|
||||
}
|
||||
|
||||
public Map<String, TreeNodeDef> getDecisionTree() {
|
||||
return decisionTree;
|
||||
}
|
||||
|
||||
public void setDecisionTree(Map<String, TreeNodeDef> decisionTree) {
|
||||
this.decisionTree = decisionTree;
|
||||
}
|
||||
|
||||
@JsonIgnore
|
||||
public List<ConditionAlgo> getConditionAlgos() {
|
||||
return asConditionAlgos(getConditions());
|
||||
|
|
|
|||
|
|
@ -5,7 +5,6 @@ import eu.dnetlib.pace.common.AbstractPaceFunctions;
|
|||
import eu.dnetlib.pace.distance.DistanceClass;
|
||||
import eu.dnetlib.pace.distance.SecondStringDistanceAlgo;
|
||||
|
||||
import java.util.HashMap;
|
||||
import java.util.Map;
|
||||
import java.util.Set;
|
||||
|
||||
|
|
@ -22,8 +21,13 @@ public class JaroWinklerNormalizedName extends SecondStringDistanceAlgo {
|
|||
//key=word, value=global identifier => example: "università"->"university", used to substitute the word with the global identifier
|
||||
private static Map<String,String> translationMap = AbstractPaceFunctions.loadMapFromClasspath("/eu/dnetlib/pace/config/translation_map.csv");
|
||||
|
||||
private static Map<String,String> cityMap = AbstractPaceFunctions.loadMapFromClasspath("/eu/dnetlib/pace/config/city_map.csv");
|
||||
|
||||
private Map<String, Number> params;
|
||||
|
||||
public JaroWinklerNormalizedName(Map<String, Number> params){
|
||||
super(params, new com.wcohen.ss.JaroWinkler());
|
||||
this.params = params;
|
||||
}
|
||||
|
||||
public JaroWinklerNormalizedName(double weight) {
|
||||
|
|
@ -43,13 +47,27 @@ public class JaroWinklerNormalizedName extends SecondStringDistanceAlgo {
|
|||
cb = removeStopwords(cb);
|
||||
|
||||
//replace keywords with codes
|
||||
ca = translate(ca, translationMap);
|
||||
cb = translate(cb, translationMap);
|
||||
String codesA = keywordsToCode(ca, translationMap, params.getOrDefault("windowSize", 4).intValue());
|
||||
String codesB = keywordsToCode(cb, translationMap, params.getOrDefault("windowSize",4).intValue());
|
||||
|
||||
if (sameKeywords(ca,cb)) {
|
||||
return normalize(ssalgo.score(removeCodes(ca), removeCodes(cb)));
|
||||
//replace cities with codes
|
||||
codesA = keywordsToCode(codesA, cityMap, params.getOrDefault("windowSize", 4).intValue());
|
||||
codesB = keywordsToCode(codesB, cityMap, params.getOrDefault("windowSize", 4).intValue());
|
||||
|
||||
//if two names have same city
|
||||
if (sameCity(codesA,codesB)){
|
||||
if (keywordsCompare(codesA, codesB)>params.getOrDefault("threshold", 0.5).doubleValue()) {
|
||||
ca = removeCodes(codesA);
|
||||
cb = removeCodes(codesB);
|
||||
if (ca.isEmpty() && cb.isEmpty())
|
||||
return 1.0;
|
||||
else
|
||||
return normalize(ssalgo.score(ca,cb));
|
||||
}
|
||||
}
|
||||
|
||||
return 0.0;
|
||||
|
||||
}
|
||||
|
||||
@Override
|
||||
|
|
|
|||
|
|
@ -0,0 +1,67 @@
|
|||
package eu.dnetlib.pace.model;
|
||||
|
||||
import eu.dnetlib.pace.util.PaceException;
|
||||
import org.codehaus.jackson.map.ObjectMapper;
|
||||
|
||||
import java.io.IOException;
|
||||
import java.io.Serializable;
|
||||
import java.util.Map;
|
||||
|
||||
public class FieldConf implements Serializable {
|
||||
|
||||
private String field; //name of the field on which apply the comparator
|
||||
private String comparator; //comparator name
|
||||
private double weight = 1.0; //weight for the field (to be used in the aggregation)
|
||||
private Map<String,Number> params; //parameters
|
||||
|
||||
public FieldConf() {
|
||||
}
|
||||
|
||||
public FieldConf(String field, String comparator, double weight, Map<String, Number> params) {
|
||||
this.field = field;
|
||||
this.comparator = comparator;
|
||||
this.weight = weight;
|
||||
this.params = params;
|
||||
}
|
||||
|
||||
public String getField() {
|
||||
return field;
|
||||
}
|
||||
|
||||
public void setField(String field) {
|
||||
this.field = field;
|
||||
}
|
||||
|
||||
public String getComparator() {
|
||||
return comparator;
|
||||
}
|
||||
|
||||
public void setComparator(String comparator) {
|
||||
this.comparator = comparator;
|
||||
}
|
||||
|
||||
public double getWeight() {
|
||||
return weight;
|
||||
}
|
||||
|
||||
public void setWeight(double weight) {
|
||||
this.weight = weight;
|
||||
}
|
||||
|
||||
public Map<String, Number> getParams() {
|
||||
return params;
|
||||
}
|
||||
|
||||
public void setParams(Map<String, Number> params) {
|
||||
this.params = params;
|
||||
}
|
||||
|
||||
@Override
|
||||
public String toString() {
|
||||
try {
|
||||
return new ObjectMapper().writeValueAsString(this);
|
||||
} catch (IOException e) {
|
||||
throw new PaceException("Impossible to convert to JSON: ", e);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
|
@ -1,19 +1,16 @@
|
|||
package eu.dnetlib.pace.model;
|
||||
|
||||
import java.io.Serializable;
|
||||
import java.lang.reflect.InvocationTargetException;
|
||||
import java.util.HashMap;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
|
||||
import com.google.common.base.Splitter;
|
||||
import com.google.common.collect.Lists;
|
||||
import com.google.gson.Gson;
|
||||
import eu.dnetlib.pace.config.PaceConfig;
|
||||
import eu.dnetlib.pace.config.Type;
|
||||
import eu.dnetlib.pace.distance.*;
|
||||
import eu.dnetlib.pace.distance.algo.*;
|
||||
import eu.dnetlib.pace.util.PaceException;
|
||||
import eu.dnetlib.pace.distance.DistanceAlgo;
|
||||
|
||||
import java.io.Serializable;
|
||||
import java.util.HashMap;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
|
||||
/**
|
||||
* The schema is composed by field definitions (FieldDef). Each field has a type, a name, and an associated distance algorithm.
|
||||
|
|
|
|||
|
|
@ -14,4 +14,11 @@ public interface FieldList extends List<Field>, Field {
|
|||
*/
|
||||
public List<String> stringList();
|
||||
|
||||
/**
|
||||
* Double[] Array
|
||||
*
|
||||
* @return the double[] array
|
||||
*/
|
||||
public double[] doubleArray();
|
||||
|
||||
}
|
||||
|
|
|
|||
|
|
@ -1,21 +1,18 @@
|
|||
package eu.dnetlib.pace.model;
|
||||
|
||||
import java.util.Collection;
|
||||
import java.util.Iterator;
|
||||
import java.util.List;
|
||||
import java.util.ListIterator;
|
||||
|
||||
import com.google.common.base.Function;
|
||||
import com.google.common.base.Joiner;
|
||||
import com.google.common.base.Predicate;
|
||||
import com.google.common.collect.Iterables;
|
||||
import com.google.common.collect.Lists;
|
||||
|
||||
import com.google.gson.Gson;
|
||||
import com.google.gson.GsonBuilder;
|
||||
import com.google.gson.JsonObject;
|
||||
import eu.dnetlib.pace.config.Type;
|
||||
|
||||
import java.util.Collection;
|
||||
import java.util.Iterator;
|
||||
import java.util.List;
|
||||
import java.util.ListIterator;
|
||||
|
||||
/**
|
||||
* The Class FieldListImpl.
|
||||
*/
|
||||
|
|
@ -319,6 +316,21 @@ public class FieldListImpl extends AbstractField implements FieldList {
|
|||
};
|
||||
}
|
||||
|
||||
@Override
|
||||
public double[] doubleArray() {
|
||||
return Lists.newArrayList(Iterables.transform(fields, getDouble())).stream().mapToDouble(d-> d).toArray();
|
||||
}
|
||||
|
||||
private Function<Field,Double> getDouble() {
|
||||
|
||||
return new Function<Field, Double>() {
|
||||
@Override
|
||||
public Double apply(final Field f) {
|
||||
return Double.parseDouble(f.stringValue());
|
||||
}
|
||||
};
|
||||
}
|
||||
|
||||
@Override
|
||||
public String toString() {
|
||||
return stringList().toString();
|
||||
|
|
|
|||
|
|
@ -0,0 +1,145 @@
|
|||
package eu.dnetlib.pace.model;
|
||||
|
||||
import eu.dnetlib.pace.config.PaceConfig;
|
||||
import eu.dnetlib.pace.tree.Comparator;
|
||||
import eu.dnetlib.pace.tree.support.AggType;
|
||||
import eu.dnetlib.pace.util.PaceException;
|
||||
import org.apache.commons.math3.stat.descriptive.DescriptiveStatistics;
|
||||
import org.codehaus.jackson.map.ObjectMapper;
|
||||
|
||||
import java.io.IOException;
|
||||
import java.io.Serializable;
|
||||
import java.util.List;
|
||||
|
||||
public class TreeNodeDef implements Serializable {
|
||||
|
||||
private List<FieldConf> fields; //list of fields involved in the tree node (contains comparators to be used and field on which apply the comparator)
|
||||
private AggType aggregation; //how to aggregate similarity measures for every field
|
||||
|
||||
private double threshold; //threshold on the similarity measure
|
||||
|
||||
private String positive; //specifies the next node in case of positive result: similarity>=th
|
||||
private String negative; //specifies the next node in case of negative result: similarity<th
|
||||
private String undefined; //specifies the next node in case of undefined result: similarity=-1
|
||||
|
||||
boolean ignoreMissing = true; //specifies what to do in case of missing field
|
||||
|
||||
public TreeNodeDef() {
|
||||
}
|
||||
|
||||
//compute the similarity measure between two documents
|
||||
public double evaluate(MapDocument doc1, MapDocument doc2) {
|
||||
|
||||
DescriptiveStatistics stats = new DescriptiveStatistics();
|
||||
|
||||
for (FieldConf fieldConf : fields) {
|
||||
|
||||
double weight = fieldConf.getWeight();
|
||||
|
||||
double similarity = comparator(fieldConf).compare(doc1.getFieldMap().get(fieldConf.getField()), doc2.getFieldMap().get(fieldConf.getField()));
|
||||
|
||||
//if similarity is -1 means that a comparator gave undefined, do not add result to the stats
|
||||
if (similarity != -1) {
|
||||
stats.addValue(weight * similarity);
|
||||
}
|
||||
else {
|
||||
if (!ignoreMissing) //if the missing value has not to be ignored, return -1
|
||||
return -1;
|
||||
}
|
||||
}
|
||||
|
||||
switch (aggregation){
|
||||
|
||||
case AVG:
|
||||
return stats.getMean();
|
||||
case SUM:
|
||||
return stats.getSum();
|
||||
case MAX:
|
||||
return stats.getMax();
|
||||
case MIN:
|
||||
return stats.getMin();
|
||||
default:
|
||||
return 0.0;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
private Comparator comparator(final FieldConf field){
|
||||
|
||||
return PaceConfig.paceResolver.getComparator(field.getComparator(), field.getParams());
|
||||
}
|
||||
|
||||
public TreeNodeDef(List<FieldConf> fields, double threshold, AggType aggregation, String positive, String negative, String undefined) {
|
||||
this.fields = fields;
|
||||
this.threshold = threshold;
|
||||
this.aggregation = aggregation;
|
||||
this.positive = positive;
|
||||
this.negative = negative;
|
||||
this.undefined = undefined;
|
||||
}
|
||||
|
||||
public boolean isIgnoreMissing() {
|
||||
return ignoreMissing;
|
||||
}
|
||||
|
||||
public void setIgnoreMissing(boolean ignoreMissing) {
|
||||
this.ignoreMissing = ignoreMissing;
|
||||
}
|
||||
|
||||
public List<FieldConf> getFields() {
|
||||
return fields;
|
||||
}
|
||||
|
||||
public void setFields(List<FieldConf> fields) {
|
||||
this.fields = fields;
|
||||
}
|
||||
|
||||
public double getThreshold() {
|
||||
return threshold;
|
||||
}
|
||||
|
||||
public void setThreshold(double threshold) {
|
||||
this.threshold = threshold;
|
||||
}
|
||||
|
||||
public AggType getAggregation() {
|
||||
return aggregation;
|
||||
}
|
||||
|
||||
public void setAggregation(AggType aggregation) {
|
||||
this.aggregation = aggregation;
|
||||
}
|
||||
|
||||
public String getPositive() {
|
||||
return positive;
|
||||
}
|
||||
|
||||
public void setPositive(String positive) {
|
||||
this.positive = positive;
|
||||
}
|
||||
|
||||
public String getNegative() {
|
||||
return negative;
|
||||
}
|
||||
|
||||
public void setNegative(String negative) {
|
||||
this.negative = negative;
|
||||
}
|
||||
|
||||
public String getUndefined() {
|
||||
return undefined;
|
||||
}
|
||||
|
||||
public void setUndefined(String undefined) {
|
||||
this.undefined = undefined;
|
||||
}
|
||||
|
||||
@Override
|
||||
public String toString() {
|
||||
try {
|
||||
return new ObjectMapper().writeValueAsString(this);
|
||||
} catch (IOException e) {
|
||||
throw new PaceException("Impossible to convert to JSON: ", e);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
|
@ -0,0 +1,33 @@
|
|||
package eu.dnetlib.pace.tree;
|
||||
|
||||
import eu.dnetlib.pace.model.Field;
|
||||
import org.apache.commons.lang.StringUtils;
|
||||
|
||||
import java.util.Map;
|
||||
|
||||
abstract class AbstractComparator implements Comparator {
|
||||
|
||||
Map<String, Number> params;
|
||||
|
||||
public AbstractComparator(Map<String, Number> params){
|
||||
this.params = params;
|
||||
}
|
||||
|
||||
@Override
|
||||
public double compare(Field a, Field b) {
|
||||
return 0.0;
|
||||
}
|
||||
|
||||
public static double stringSimilarity(String s1, String s2) {
|
||||
String longer = s1, shorter = s2;
|
||||
if (s1.length() < s2.length()) { // longer should always have greater length
|
||||
longer = s2; shorter = s1;
|
||||
}
|
||||
int longerLength = longer.length();
|
||||
if (longerLength == 0) //if strings have 0 length return 0 (no similarity)
|
||||
return 0.0;
|
||||
|
||||
return (longerLength - StringUtils.getLevenshteinDistance(longer, shorter)) / (double) longerLength;
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,42 @@
|
|||
package eu.dnetlib.pace.tree;
|
||||
|
||||
import eu.dnetlib.pace.model.Field;
|
||||
import eu.dnetlib.pace.model.FieldList;
|
||||
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
|
||||
@ComparatorClass("coauthorsMatch")
|
||||
public class CoauthorsMatch extends AbstractComparator {
|
||||
|
||||
public CoauthorsMatch(Map<String, Number> params) {
|
||||
super(params);
|
||||
}
|
||||
|
||||
@Override
|
||||
public double compare(Field a, Field b) {
|
||||
|
||||
final List<String> c1 = ((FieldList) a).stringList();
|
||||
final List<String> c2 = ((FieldList) b).stringList();
|
||||
|
||||
int size1 = c1.size();
|
||||
int size2 = c2.size();
|
||||
|
||||
//few coauthors or too many coauthors
|
||||
if (size1 < params.getOrDefault("minCoauthors", 5).intValue() || size2 < params.getOrDefault("minCoauthors", 5).intValue() || (size1+size2 > params.getOrDefault("maxCoauthors", 200).intValue()))
|
||||
return -1;
|
||||
|
||||
int coauthorship = 0;
|
||||
for (String ca1: c1){
|
||||
|
||||
for (String ca2: c2){
|
||||
|
||||
if (stringSimilarity(ca1.replaceAll("\\.","").replaceAll(" ",""), ca2.replaceAll("\\.","").replaceAll(" ",""))>= params.getOrDefault("simTh", 0.7).doubleValue())
|
||||
coauthorship++;
|
||||
}
|
||||
}
|
||||
|
||||
return coauthorship;
|
||||
|
||||
}
|
||||
}
|
||||
|
|
@ -0,0 +1,10 @@
|
|||
package eu.dnetlib.pace.tree;
|
||||
|
||||
import eu.dnetlib.pace.model.Field;
|
||||
|
||||
public interface Comparator {
|
||||
|
||||
//compare two fields and returns: the distace measure, -1 if undefined
|
||||
public double compare(Field a, Field b);
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,14 @@
|
|||
package eu.dnetlib.pace.tree;
|
||||
|
||||
import java.lang.annotation.ElementType;
|
||||
import java.lang.annotation.Retention;
|
||||
import java.lang.annotation.RetentionPolicy;
|
||||
import java.lang.annotation.Target;
|
||||
|
||||
@Retention(RetentionPolicy.RUNTIME)
|
||||
@Target(ElementType.TYPE)
|
||||
public @interface ComparatorClass {
|
||||
|
||||
public String value();
|
||||
}
|
||||
|
||||
|
|
@ -0,0 +1,25 @@
|
|||
package eu.dnetlib.pace.tree;
|
||||
|
||||
import eu.dnetlib.pace.model.Field;
|
||||
|
||||
import java.util.Map;
|
||||
|
||||
@ComparatorClass("exactMatch")
|
||||
public class ExactMatch extends AbstractComparator {
|
||||
|
||||
public ExactMatch(Map<String, Number> params) {
|
||||
super(params);
|
||||
}
|
||||
|
||||
@Override
|
||||
public double compare(Field a, Field b) {
|
||||
|
||||
if (a.stringValue().isEmpty() || b.stringValue().isEmpty())
|
||||
return -1;
|
||||
else if (a.stringValue().equals(b.stringValue()))
|
||||
return 1;
|
||||
else
|
||||
return 0;
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,31 @@
|
|||
package eu.dnetlib.pace.tree;
|
||||
|
||||
import eu.dnetlib.pace.model.Field;
|
||||
|
||||
import java.util.Map;
|
||||
|
||||
@ComparatorClass("similar")
|
||||
public class SimilarMatch extends AbstractComparator {
|
||||
|
||||
public SimilarMatch(Map<String, Number> params) {
|
||||
super(params);
|
||||
}
|
||||
|
||||
@Override
|
||||
public double compare(Field a, Field b) {
|
||||
|
||||
if (a.stringValue().isEmpty() || b.stringValue().isEmpty())
|
||||
return -1; //undefined if one name is missing
|
||||
|
||||
//take only the first name
|
||||
String firstname1 = a.stringValue().split(" ")[0];
|
||||
String firstname2 = b.stringValue().split(" ")[0];
|
||||
|
||||
if (firstname1.toLowerCase().trim().replaceAll("\\.","").replaceAll("\\s","").length()<=2 || firstname2.toLowerCase().replaceAll("\\.", "").replaceAll("\\s","").length()<=2) //too short names (considered similar)
|
||||
return 1;
|
||||
|
||||
return stringSimilarity(firstname1,firstname2);
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,36 @@
|
|||
package eu.dnetlib.pace.tree;
|
||||
|
||||
import eu.dnetlib.pace.model.Field;
|
||||
import eu.dnetlib.pace.model.FieldListImpl;
|
||||
|
||||
import java.util.Map;
|
||||
|
||||
@ComparatorClass("topicsMatch")
|
||||
public class TopicsMatch extends AbstractComparator {
|
||||
|
||||
public TopicsMatch(Map<String, Number> params) {
|
||||
super(params);
|
||||
}
|
||||
|
||||
@Override
|
||||
public double compare(Field a, Field b) {
|
||||
|
||||
double[] t1 = ((FieldListImpl) a).doubleArray();
|
||||
double[] t2 = ((FieldListImpl) b).doubleArray();
|
||||
|
||||
if (t1 == null || t2 == null)
|
||||
return -1; //0 similarity if no topics in one of the authors or in both
|
||||
|
||||
double area = 0.0;
|
||||
|
||||
double min_value[] = new double[t1.length];
|
||||
for(int i=0; i<t1.length; i++){
|
||||
|
||||
min_value[i] = (t1[i]<t2[i])?t1[i]:t2[i];
|
||||
area += min_value[i];
|
||||
}
|
||||
|
||||
return area;
|
||||
|
||||
}
|
||||
}
|
||||
|
|
@ -0,0 +1,22 @@
|
|||
package eu.dnetlib.pace.tree;
|
||||
|
||||
import eu.dnetlib.pace.model.Field;
|
||||
import eu.dnetlib.pace.model.FieldList;
|
||||
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
|
||||
@ComparatorClass("undefined")
|
||||
public class UndefinedNode implements Comparator {
|
||||
|
||||
Map<String, Number> params;
|
||||
|
||||
@Override
|
||||
public double compare(Field a, Field b) {
|
||||
|
||||
final List<String> sa = ((FieldList) a).stringList();
|
||||
final List<String> sb = ((FieldList) b).stringList();
|
||||
|
||||
return 0;
|
||||
}
|
||||
}
|
||||
|
|
@ -0,0 +1,21 @@
|
|||
package eu.dnetlib.pace.tree.support;
|
||||
|
||||
import eu.dnetlib.pace.util.PaceException;
|
||||
|
||||
public enum AggType {
|
||||
|
||||
AVG,
|
||||
SUM,
|
||||
MAX,
|
||||
MIN;
|
||||
|
||||
public static AggType getEnum(String value) {
|
||||
|
||||
try {
|
||||
return AggType.valueOf(value);
|
||||
}
|
||||
catch (IllegalArgumentException e) {
|
||||
throw new PaceException("Undefined aggregation type", e);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
|
@ -0,0 +1,20 @@
|
|||
package eu.dnetlib.pace.tree.support;
|
||||
|
||||
public enum MatchType {
|
||||
|
||||
ORCID_MATCH,
|
||||
COAUTHORS_MATCH,
|
||||
TOPICS_MATCH,
|
||||
NO_MATCH,
|
||||
UNDEFINED;
|
||||
|
||||
public static MatchType getEnum(String value) {
|
||||
|
||||
try {
|
||||
return MatchType.valueOf(value);
|
||||
}
|
||||
catch (IllegalArgumentException e) {
|
||||
return MatchType.UNDEFINED;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
|
@ -41,9 +41,10 @@ public class BlockProcessor {
|
|||
final Queue<MapDocument> q = prepare(documents);
|
||||
|
||||
if (q.size() > 1) {
|
||||
log.debug("reducing key: '" + key + "' records: " + q.size());
|
||||
// log.info("reducing key: '" + key + "' records: " + q.size());
|
||||
//process(q, context);
|
||||
process(simplifyQueue(q, key, context), context);
|
||||
|
||||
} else {
|
||||
context.incrementCounter(dedupConf.getWf().getEntityType(), "records per hash key = 1", 1);
|
||||
}
|
||||
|
|
@ -109,7 +110,7 @@ public class BlockProcessor {
|
|||
q.addAll(tempResults);
|
||||
} else {
|
||||
context.incrementCounter(wf.getEntityType(), String.format("Skipped records for count(%s) >= %s", wf.getOrderField(), wf.getGroupMaxSize()), tempResults.size());
|
||||
log.debug("Skipped field: " + fieldRef + " - size: " + tempResults.size() + " - ngram: " + ngram);
|
||||
// log.info("Skipped field: " + fieldRef + " - size: " + tempResults.size() + " - ngram: " + ngram);
|
||||
}
|
||||
}
|
||||
|
||||
|
|
@ -149,8 +150,8 @@ public class BlockProcessor {
|
|||
|
||||
if (!idCurr.equals(idPivot) && (fieldCurr != null)) {
|
||||
|
||||
final ScoreResult sr = algo.between(pivot, curr, dedupConf);
|
||||
log.debug(sr.toString()+"SCORE "+ sr.getScore());
|
||||
final ScoreResult sr = similarity(algo, pivot, curr);
|
||||
// log.info(sr.toString()+"SCORE "+ sr.getScore());
|
||||
emitOutput(sr, idPivot, idCurr, context);
|
||||
i++;
|
||||
}
|
||||
|
|
@ -171,6 +172,15 @@ public class BlockProcessor {
|
|||
}
|
||||
}
|
||||
|
||||
private ScoreResult similarity(final PaceDocumentDistance algo, final MapDocument a, final MapDocument b) {
|
||||
try {
|
||||
return algo.between(a, b, dedupConf);
|
||||
} catch(Throwable e) {
|
||||
log.error(String.format("\nA: %s\n----------------------\nB: %s", a, b), e);
|
||||
throw new IllegalArgumentException(e);
|
||||
}
|
||||
}
|
||||
|
||||
private boolean mustSkip(final String idPivot) {
|
||||
return dedupConf.getWf().getSkipList().contains(getNsPrefix(idPivot));
|
||||
}
|
||||
|
|
|
|||
|
|
@ -2,11 +2,11 @@ package eu.dnetlib.pace.util;
|
|||
|
||||
public class PaceException extends RuntimeException {
|
||||
|
||||
public PaceException(String s, Throwable e) {
|
||||
public PaceException(String s, Throwable e){
|
||||
super(s, e);
|
||||
}
|
||||
|
||||
public PaceException(String s) {
|
||||
public PaceException(String s){
|
||||
super(s);
|
||||
}
|
||||
|
||||
|
|
|
|||
|
|
@ -7,6 +7,8 @@ import eu.dnetlib.pace.condition.ConditionClass;
|
|||
import eu.dnetlib.pace.distance.DistanceAlgo;
|
||||
import eu.dnetlib.pace.distance.DistanceClass;
|
||||
import eu.dnetlib.pace.model.FieldDef;
|
||||
import eu.dnetlib.pace.tree.Comparator;
|
||||
import eu.dnetlib.pace.tree.ComparatorClass;
|
||||
import org.reflections.Reflections;
|
||||
|
||||
import java.io.Serializable;
|
||||
|
|
@ -20,6 +22,7 @@ public class PaceResolver implements Serializable {
|
|||
private final Map<String, Class<ClusteringFunction>> clusteringFunctions;
|
||||
private final Map<String, Class<ConditionAlgo>> conditionAlgos;
|
||||
private final Map<String, Class<DistanceAlgo>> distanceAlgos;
|
||||
private final Map<String, Class<Comparator>> comparators;
|
||||
|
||||
public PaceResolver() {
|
||||
|
||||
|
|
@ -34,13 +37,17 @@ public class PaceResolver implements Serializable {
|
|||
this.distanceAlgos = new Reflections("eu.dnetlib").getTypesAnnotatedWith(DistanceClass.class).stream()
|
||||
.filter(DistanceAlgo.class::isAssignableFrom)
|
||||
.collect(Collectors.toMap(cl -> cl.getAnnotation(DistanceClass.class).value(), cl -> (Class<DistanceAlgo>)cl));
|
||||
|
||||
this.comparators = new Reflections("eu.dnetlib").getTypesAnnotatedWith(ComparatorClass.class).stream()
|
||||
.filter(Comparator.class::isAssignableFrom)
|
||||
.collect(Collectors.toMap(cl -> cl.getAnnotation(ComparatorClass.class).value(), cl -> (Class<Comparator>) cl));
|
||||
}
|
||||
|
||||
public ClusteringFunction getClusteringFunction(String name, Map<String, Integer> params) throws PaceException {
|
||||
try {
|
||||
return clusteringFunctions.get(name).getDeclaredConstructor(Map.class).newInstance(params);
|
||||
} catch (InstantiationException | IllegalAccessException | InvocationTargetException | NoSuchMethodException e) {
|
||||
throw new PaceException(name + "not found", e);
|
||||
throw new PaceException(name + " not found ", e);
|
||||
}
|
||||
}
|
||||
|
||||
|
|
@ -48,7 +55,7 @@ public class PaceResolver implements Serializable {
|
|||
try {
|
||||
return distanceAlgos.get(name).getDeclaredConstructor(Map.class).newInstance(params);
|
||||
} catch (InstantiationException | IllegalAccessException | InvocationTargetException | NoSuchMethodException e) {
|
||||
throw new PaceException(name + "not found", e);
|
||||
throw new PaceException(name + " not found ", e);
|
||||
}
|
||||
}
|
||||
|
||||
|
|
@ -56,7 +63,15 @@ public class PaceResolver implements Serializable {
|
|||
try {
|
||||
return conditionAlgos.get(name).getDeclaredConstructor(String.class, List.class).newInstance(name, fields);
|
||||
} catch (InstantiationException | IllegalAccessException | InvocationTargetException | NoSuchMethodException e) {
|
||||
throw new PaceException(name + "not found", e);
|
||||
throw new PaceException(name + " not found ", e);
|
||||
}
|
||||
}
|
||||
|
||||
public Comparator getComparator(String name, Map<String, Number> params) throws PaceException {
|
||||
try {
|
||||
return comparators.get(name).getDeclaredConstructor(Map.class).newInstance(params);
|
||||
} catch (InstantiationException | IllegalAccessException | InvocationTargetException | NoSuchMethodException | NullPointerException e) {
|
||||
throw new PaceException(name + " not found ", e);
|
||||
}
|
||||
}
|
||||
|
||||
|
|
|
|||
Binary file not shown.
File diff suppressed because it is too large
Load Diff
|
|
@ -611,7 +611,6 @@ terzo
|
|||
th
|
||||
ti
|
||||
titolo
|
||||
torino
|
||||
tra
|
||||
tranne
|
||||
tre
|
||||
|
|
|
|||
|
|
@ -1,11 +1,11 @@
|
|||
key::1;university;università;universitario;universitaria;université;universitaire;universitaires;universidad;universitade;Universität;Uniwersytet;университет;universiteit;πανεπιστήμιο
|
||||
key::1;university;università;università studi;universitario;universitaria;université;universitaire;universitaires;universidad;universitade;Universität;Uniwersytet;университет;universiteit;πανεπιστήμιο
|
||||
key::2;studies;studi;études;estudios;estudos;Studien;studia;исследования;studies;σπουδές
|
||||
key::3;advanced;superiore;supérieur;supérieure;supérieurs;supérieures;avancado;avancados;fortgeschrittene;fortgeschritten;zaawansowany;передовой;gevorderd;gevorderde;προχωρημένος;προχωρημένη;προχωρημένο;προχωρημένες;προχωρημένα
|
||||
key::4;institute;istituto;institut;instituto;instituto;Institut;instytut;институт;instituut;ινστιτούτο
|
||||
key::5;hospital;ospedale;hôpital;hospital;hospital;Krankenhaus;szpital;больница;ziekenhuis;νοσοκομείο
|
||||
key::6;research;ricerca;recherche;investigacion;pesquisa;Forschung;badania;исследования;onderzoek;έρευνα
|
||||
key::6;research;ricerca;recherche;investigacion;pesquisa;Forschung;badania;исследования;onderzoek;έρευνα;erevna;erevnas
|
||||
key::7;college;collegio;université;colegio;faculdade;Hochschule;Szkoła Wyższa;Высшая школа;universiteit;κολλέγιο
|
||||
key::8;foundation;fondazione;fondation;fundación;fundação;Stiftung;Fundacja;фонд;stichting;ίδρυμα
|
||||
key::8;foundation;fondazione;fondation;fundación;fundação;Stiftung;Fundacja;фонд;stichting;ίδρυμα;idryma
|
||||
key::9;center;centro;centre;centro;centro;zentrum;centrum;центр;centrum;κέντρο
|
||||
key::10;national;nazionale;national;nationale;nationaux;nationales;nacional;nacional;national;krajowy;национальный;nationaal;nationale;εθνικό
|
||||
key::11;association;associazione;association;asociación;associação;Verein;verband;stowarzyszenie;ассоциация;associatie
|
||||
|
|
@ -44,4 +44,60 @@ key::43;initiative;iniziativa;initiative;инициатива;initiatief;πρω
|
|||
key::44;academic;accademico;académique;universitaire;акадеческий academisch;ακαδημαϊκός;ακαδημαϊκή;ακαδημαϊκό;ακαδημαϊκές;ακαδημαϊκοί
|
||||
key::45;institution;istituzione;institution;институциональный;instelling;ινστιτούτο
|
||||
key::46;division;divisione;division;отделение;divisie;τμήμα
|
||||
key::47;committee;comitato;comité;комитет;commissie;επιτροπή
|
||||
key::47;committee;comitato;comité;комитет;commissie;επιτροπή
|
||||
key::48;promotion;promozione;продвижение;proothisis;forderung
|
||||
key::49;medical;medicine;clinical;medicina;clinici;médico;medicina;clínica;médico;medicina;clínica;medizinisch;Medizin;klinisch;medisch;geneeskunde;klinisch;ιατρικός;ιατρική;ιατρικό;ιατρικά;κλινικός;κλινική;κλινικό;κλινικά;tıbbi;tıp;klinik;orvosi;orvostudomány;klinikai;zdravniški;medicinski;klinični;meditsiini;kliinik;kliiniline;
|
||||
key::50;technology;technological;tecnologia;tecnologie;tecnología;tecnológico;tecnologia;tecnológico;Technologie;technologisch;technologie;technologisch;τεχνολογία;τεχνολογικός;τεχνολογική;τεχνολογικό;teknoloji;teknolojik;technológia;technológiai;tehnologija;tehnološki;tehnoloogia;tehnoloogiline;
|
||||
key::51;science;scientific;scienza;scientifiche;scienze;ciencia;científico;ciência;científico;Wissenschaft;wissenschaftlich;wetenschap;wetenschappelijk;επιστήμη;επιστημονικός;επιστημονική;επιστημονικό;επιστημονικά;bilim;bilimsel;tudomány;tudományos;znanost;znanstveni;teadus;teaduslik;
|
||||
key::52;engineering;ingegneria;ingeniería;engenharia;Ingenieurwissenschaft;ingenieurswetenschappen;bouwkunde;μηχανικός;μηχανική;μηχανικό;mühendislik;mérnöki;Inženirstvo;inseneeria;inseneri;
|
||||
key::53;management;gestione;gestionale;gestionali;gestión;administración;gestão;administração;Verwaltung;management;διαχείριση;yönetim;menedzsment;vodstvo;upravljanje;management;juhtkond;juhtimine;haldus;
|
||||
key::54;energy;energia;energía;energia;Energie;energie;ενέργεια;enerji;energia;energija;energia;
|
||||
key::55;agricultural;agriculture;agricoltura;agricole;agrícola;agricultura;agrícola;agricultura;landwirtschaftlich;Landwirtschaft;landbouwkundig;landbouw;αγροτικός;αγροτική;αγροτικό;γεωργικός;γεωργική;γεωργικό;γεωργία;tarımsal;tarım;mezőgazdasági;mezőgazdaság;poljedelski;poljedelstvo;põllumajandus;põllumajanduslik;
|
||||
key::56;information;informazione;información;informação;Information;informatie;πληροφορία;bilgi;információ;informacija;informatsioon;
|
||||
key::57;social;sociali;social;social;Sozial;sociaal;maatschappelijk;κοινωνικός;κοινωνική;κοινωνικό;κοινωνικά;sosyal;szociális;družbeni;sotsiaal;sotsiaalne;
|
||||
key::58;environmental;ambiente;medioambiental;ambiente;medioambiente;meioambiente;Umwelt;milieu;milieuwetenschap;milieukunde;περιβαλλοντικός;περιβαλλοντική;περιβαλλοντικό;περιβαλλοντικά;çevre;környezeti;okoliški;keskonna;;
|
||||
key::59;business;economia;economiche;economica;negocio;empresa;negócio;Unternehmen;bedrijf;bedrijfskunde;επιχείρηση;iş;üzleti;posel;ettevõte/äri;
|
||||
key::60;pharmaceuticals;pharmacy;farmacia;farmaceutica;farmacéutica;farmacia;farmacêutica;farmácia;Pharmazeutika;Arzneimittelkunde;farmaceutica;geneesmiddelen;apotheek;φαρμακευτικός;φαρμακευτική;φαρμακευτικό;φαρμακευτικά;φαρμακείο;ilaç;eczane;gyógyszerészeti;gyógyszertár;farmacevtika;lekarništvo;farmaatsia;farmatseutiline;
|
||||
key::61;healthcare;salute;atenciónmédica;cuidadodelasalud;cuidadoscomasaúde;Gesundheitswesen;gezondheidszorg;ιατροφαρμακευτικήπερίθαλψη;sağlıkhizmeti;egészségügy;zdravstvo;tervishoid;tervishoiu;
|
||||
key::62;history;storia;historia;história;Geschichte;geschiedenis;geschiedkunde;ιστορία;tarih;történelem;zgodovina;ajalugu;
|
||||
key::63;materials;materiali;materia;materiales;materiais;materialen;υλικά;τεκμήρια;malzemeler;anyagok;materiali;materjalid;vahendid;
|
||||
key::64;economics;economia;economiche;economica;economía;economia;Wirtschaft;economie;οικονομικά;οικονομικέςεπιστήμες;ekonomi;közgazdaságtan;gospodarstvo;ekonomija;majanduslik;majandus;
|
||||
key::65;therapeutics;terapeutica;terapéutica;terapêutica;therapie;θεραπευτική;tedavibilimi;gyógykezelés;terapevtika;terapeutiline;ravi;
|
||||
key::66;oncology;oncologia;oncologico;oncología;oncologia;Onkologie;oncologie;ογκολογία;onkoloji;onkológia;onkologija;onkoloogia;
|
||||
key::67;natural;naturali;naturale;natural;natural;natürlich;natuurlijk;φυσικός;φυσική;φυσικό;φυσικά;doğal;természetes;naraven;loodus;
|
||||
key::68;educational;educazione;pedagogia;educacional;educativo;educacional;pädagogisch;educatief;εκπαιδευτικός;εκπαιδευτική;εκπαιδευτικό;εκπαιδευτικά;eğitimsel;oktatási;izobraževalen;haridus;hariduslik;
|
||||
key::69;biomedical;biomedica;biomédico;biomédico;biomedizinisch;biomedisch;βιοιατρικός;βιοιατρική;βιοιατρικό;βιοιατρικά;biyomedikal;orvosbiológiai;biomedicinski;biomeditsiiniline;
|
||||
key::70;veterinary;veterinaria;veterinarie;veterinaria;veterinária;tierärtzlich;veterinair;veeartsenijlkunde;κτηνιατρικός;κτηνιατρική;κτηνιατρικό;κτηνιατρικά;veteriner;állatorvosi;veterinar;veterinarski;veterinaaria;
|
||||
key::71;chemistry;chimica;química;química;Chemie;chemie;scheikunde;χημεία;kimya;kémia;kemija;keemia;
|
||||
key::72;security;sicurezza;seguridad;segurança;Sicherheit;veiligheid;ασφάλεια;güvenlik;biztonsági;varnost;turvalisus;julgeolek;
|
||||
key::73;biotechnology;biotecnologia;biotecnologie;biotecnología;biotecnologia;Biotechnologie;biotechnologie;βιοτεχνολογία;biyoteknoloji;biotechnológia;biotehnologija;biotehnoloogia;
|
||||
key::74;military;militare;militari;militar;militar;Militär;militair;leger;στρατιωτικός;στρατιωτική;στρατιωτικό;στρατιωτικά;askeri;katonai;vojaški;vojni;militaar;
|
||||
key::75;theological;teologia;teologico;teológico;tecnológica;theologisch;theologisch;θεολογικός;θεολογική;θεολογικό;θεολογικά;teolojik;technológiai;teološki;teoloogia;usuteadus;teoloogiline;
|
||||
key::76;electronics;elettronica;electrónica;eletrônicos;Elektronik;elektronica;ηλεκτρονική;elektronik;elektronika;elektronika;elektroonika;
|
||||
key::77;forestry;forestale;forestali;silvicultura;forestal;floresta;Forstwirtschaft;bosbouw;δασοκομία;δασολογία;ormancılık;erdészet;gozdarstvo;metsandus;
|
||||
key::78;maritime;marittima;marittime;marittimo;marítimo;marítimo;maritiem;ναυτικός;ναυτική;ναυτικό;ναυτικά;ναυτιλιακός;ναυτιλιακή;ναυτιλιακό;ναυτιλιακά;θαλάσσιος;θαλάσσια;θαλάσσιο;denizcilik;tengeri;morski;mere;merendus;
|
||||
key::79;sports;sport;deportes;esportes;Sport;sport;sportwetenschappen;άθληση;γυμναστικήδραστηριότητα;spor;sport;šport;sport;spordi;
|
||||
key::80;surgery;chirurgia;chirurgiche;cirugía;cirurgia;Chirurgie;chirurgie;heelkunde;εγχείρηση;επέμβαση;χειρουργικήεπέμβαση;cerrahi;sebészet;kirurgija;kirurgia;
|
||||
key::81;cultural;culturale;culturali;cultura;cultural;cultural;kulturell;cultureel;πολιτιστικός;πολιτιστική;πολιτιστικό;πολιτισμικός;πολιτισμική;πολιτισμικό;kültürel;kultúrális;kulturni;kultuuri;kultuuriline;
|
||||
key::82;computerscience;informatica;ordenador;computadora;informática;computación;cienciasdelacomputación;ciênciadacomputação;Computer;computer;υπολογιστής;ηλεκτρονικόςυπολογιστής;bilgisayar;számítógép;računalnik;arvuti;
|
||||
key::83;finance;financial;finanza;finanziarie;finanza;financiero;finanças;financeiro;Finanzen;finanziell;financiën;financieel;χρηματοοικονομικά;χρηματοδότηση;finanse;finansal;pénzügy;pénzügyi;finance;finančni;finants;finantsiline;
|
||||
key::84;communication;comunicazione;comuniciación;comunicação;Kommunikation;communication;επικοινωνία;iletişim;kommunikáció;komuniciranje;kommunikatsioon;
|
||||
key::85;justice;giustizia;justicia;justiça;Recht;Justiz;justitie;gerechtigheid;δικαιοσύνη;υπουργείοδικαιοσύνης;δίκαιο;adalet;igazságügy;pravo;õigus;
|
||||
key::86;aerospace;aerospaziale;aerospaziali;aeroespacio;aeroespaço;Luftfahrt;luchtvaart;ruimtevaart;αεροπορικός;αεροπορική;αεροπορικό;αεροναυπηγικός;αεροναυπηγική;αεροναυπηγικό;αεροναυπηγικά;havacılıkveuzay;légtér;zrakoplovstvo;atmosfäär;kosmos;
|
||||
key::87;dermatology;dermatologia;dermatología;dermatologia;Dermatologie;dermatologie;δρματολογία;dermatoloji;bőrgyógyászat;dermatológia;dermatologija;dermatoloogia;
|
||||
key::88;architecture;architettura;arquitectura;arquitetura;Architektur;architectuur;αρχιτεκτονική;mimarlık;építészet;arhitektura;arhitektuur;
|
||||
key::89;mathematics;matematica;matematiche;matemáticas;matemáticas;Mathematik;wiskunde;mathematica;μαθηματικά;matematik;matematika;matematika;matemaatika;
|
||||
key::90;language;lingue;linguistica;linguistiche;lenguaje;idioma;língua;idioma;Sprache;taal;taalkunde;γλώσσα;dil;nyelv;jezik;keel;
|
||||
key::91;neuroscience;neuroscienza;neurociencia;neurociência;Neurowissenschaft;neurowetenschappen;νευροεπιστήμη;nörobilim;idegtudomány;nevroznanost;neuroteadused;
|
||||
key::92;automation;automazione;automatización;automação;Automatisierung;automatisering;αυτοματοποίηση;otomasyon;automatizálás;avtomatizacija;automatiseeritud;
|
||||
key::93;pediatric;pediatria;pediatriche;pediatrico;pediátrico;pediatría;pediátrico;pediatria;pädiatrisch;pediatrische;παιδιατρική;pediatrik;gyermekgyógyászat;pediatrija;pediaatria;
|
||||
key::94;photonics;fotonica;fotoniche;fotónica;fotônica;Photonik;fotonica;φωτονική;fotonik;fotonika;fotonika;fotoonika;
|
||||
key::95;mechanics;meccanica;meccaniche;mecánica;mecânica;Mechanik;Maschinenbau;mechanica;werktuigkunde;μηχανικής;mekanik;gépészet;mehanika;mehaanika;
|
||||
key::96;psychiatrics;psichiatria;psichiatrica;psichiatriche;psiquiatría;psiquiatria;Psychiatrie;psychiatrie;ψυχιατρική;psikiyatrik;pszihiátria;psihiatrija;psühhaatria;
|
||||
key::97;psychology;fisiologia;psicología;psicologia;Psychologie;psychologie;ψυχολογία;psikoloji;pszihológia;psihologija;psühholoogia;
|
||||
key::98;automotive;industriaautomobilistica;industriadelautomóvil;automotriz;industriaautomotriz;automotivo;Automobilindustrie;autoindustrie;αυτοκίνητος;αυτοκίνητη;αυτοκίνητο;αυτοκινούμενος;αυτοκινούμενη;αυτοκινούμενο;αυτοκινητιστικός;αυτοκινητιστική;αυτοκινητιστικό;otomotiv;autóipari;samogiben;avtomobilskaindustrija;auto-;
|
||||
key::99;neurology;neurologia;neurologiche;neurología;neurologia;Neurologie;neurologie;zenuwleer;νευρολογία;nöroloji;neurológia;ideggyógyászat;nevrologija;neuroloogia;
|
||||
key::100;geology;geologia;geologiche;geología;geologia;Geologie;geologie;aardkunde;γεωλογία;jeoloji;geológia;földtudomány;geologija;geoloogia;
|
||||
key::101;microbiology;microbiologia;micro-biologia;microbiologiche;microbiología;microbiologia;Mikrobiologie;microbiologie;μικροβιολογία;mikrobiyoloji;mikrobiológia;mikrobiologija;mikrobioloogia;
|
||||
key::102;informatics;informatica;informática;informática;informatica;
|
||||
key:103;forschungsgemeinschaft;comunita ricerca;research community;research foundation;research association
|
||||
|
|
|
|||
|
|
|
@ -1,14 +1,15 @@
|
|||
package eu.dnetlib.pace;
|
||||
|
||||
import java.io.IOException;
|
||||
import java.io.StringWriter;
|
||||
|
||||
import org.apache.commons.io.IOUtils;
|
||||
|
||||
import eu.dnetlib.pace.config.Type;
|
||||
import eu.dnetlib.pace.model.Field;
|
||||
import eu.dnetlib.pace.model.FieldListImpl;
|
||||
import eu.dnetlib.pace.model.FieldValueImpl;
|
||||
import org.junit.Test;
|
||||
import org.apache.commons.io.IOUtils;
|
||||
|
||||
import java.io.IOException;
|
||||
import java.io.StringWriter;
|
||||
import java.util.List;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
public abstract class AbstractPaceTest {
|
||||
|
||||
|
|
@ -34,4 +35,14 @@ public abstract class AbstractPaceTest {
|
|||
return new FieldValueImpl(Type.URL, "url", s);
|
||||
}
|
||||
|
||||
protected Field createFieldList(List<String> strings, String fieldName){
|
||||
|
||||
List<FieldValueImpl> fieldValueStream = strings.stream().map(s -> new FieldValueImpl(Type.String, fieldName, s)).collect(Collectors.toList());
|
||||
|
||||
FieldListImpl a = new FieldListImpl();
|
||||
a.addAll(fieldValueStream);
|
||||
|
||||
return a;
|
||||
|
||||
}
|
||||
}
|
||||
|
|
|
|||
|
|
@ -1,12 +1,8 @@
|
|||
package eu.dnetlib.pace.config;
|
||||
|
||||
import com.google.common.collect.Maps;
|
||||
import eu.dnetlib.pace.AbstractPaceTest;
|
||||
import org.junit.Test;
|
||||
|
||||
import java.io.IOException;
|
||||
import java.util.Map;
|
||||
|
||||
import static org.junit.Assert.assertEquals;
|
||||
import static org.junit.Assert.assertNotNull;
|
||||
|
||||
|
|
@ -14,56 +10,31 @@ public class ConfigTest extends AbstractPaceTest {
|
|||
|
||||
@Test
|
||||
public void dedupConfigSerializationTest() {
|
||||
String fromClasspath = readFromClasspath("result.pace.conf.json");
|
||||
System.out.println("fromClasspath = " + fromClasspath);
|
||||
final DedupConfig cfgFromClasspath = DedupConfig.load(readFromClasspath("result.pace.conf.json"));
|
||||
|
||||
final DedupConfig conf = DedupConfig.load(fromClasspath);
|
||||
final String conf = cfgFromClasspath.toString();
|
||||
|
||||
assertNotNull(conf);
|
||||
// System.out.println("*****SERIALIZED*****");
|
||||
// System.out.println(conf);
|
||||
// System.out.println("*****FROM CLASSPATH*****");
|
||||
// System.out.println(readFromClasspath("result.pace.conf.json"));
|
||||
|
||||
final DedupConfig cfgFromSerialization = DedupConfig.load(conf);
|
||||
|
||||
assertEquals(cfgFromClasspath.toString(), cfgFromSerialization.toString());
|
||||
|
||||
assertNotNull(cfgFromClasspath);
|
||||
assertNotNull(cfgFromSerialization);
|
||||
|
||||
|
||||
String parsed = conf.toString();
|
||||
|
||||
System.out.println("parsed = " + parsed);
|
||||
|
||||
DedupConfig conf2 = DedupConfig.load(parsed);
|
||||
|
||||
assertNotNull(conf2);
|
||||
|
||||
System.out.println("conf2 = " + conf2);
|
||||
|
||||
assertEquals(parsed, conf2.toString());
|
||||
}
|
||||
|
||||
@Test
|
||||
public void dedupConfigTest() {
|
||||
|
||||
DedupConfig load = DedupConfig.load(readFromClasspath("result.pace.conf.json"));
|
||||
DedupConfig load = DedupConfig.load(readFromClasspath("org.curr.conf"));
|
||||
|
||||
assertNotNull(load);
|
||||
System.out.println(load.toString());
|
||||
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testLoadDefaults() throws IOException {
|
||||
|
||||
final String entityType = "organization";
|
||||
final String configurationId = "dedup-organization-simple";
|
||||
|
||||
final Map<String, String> config = Maps.newHashMap();
|
||||
|
||||
config.put("entityType", entityType);
|
||||
config.put("configurationId", configurationId);
|
||||
final DedupConfig dedupConf = DedupConfig.loadDefault(config);
|
||||
|
||||
//System.out.println("dedupConf = " + dedupConf);
|
||||
assertNotNull(dedupConf);
|
||||
assertNotNull(dedupConf.getWf());
|
||||
assertEquals(dedupConf.getWf().getEntityType(), entityType);
|
||||
assertEquals(dedupConf.getWf().getConfigurationId(), configurationId);
|
||||
}
|
||||
|
||||
|
||||
|
||||
}
|
||||
|
|
|
|||
|
|
@ -1,17 +1,17 @@
|
|||
package eu.dnetlib.pace.distance;
|
||||
|
||||
import eu.dnetlib.pace.distance.algo.JaroWinklerNormalizedName;
|
||||
import eu.dnetlib.pace.distance.algo.LevensteinTitleIgnoreVersion;
|
||||
import org.apache.commons.lang.StringUtils;
|
||||
import org.junit.Before;
|
||||
import org.junit.Test;
|
||||
|
||||
import eu.dnetlib.pace.common.AbstractPaceFunctions;
|
||||
|
||||
import java.util.HashMap;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
|
||||
import static junit.framework.Assert.assertEquals;
|
||||
import static junit.framework.Assert.assertTrue;
|
||||
|
||||
public class DistanceAlgoTest extends AbstractPaceFunctions {
|
||||
|
||||
private final static String TEST_STRING = "Toshiba NB550D: è un netbook su piattaforma AMD Fusion⁽¹²⁾.";
|
||||
|
|
@ -48,17 +48,59 @@ public class DistanceAlgoTest extends AbstractPaceFunctions {
|
|||
@Test
|
||||
public void testJaroWinklerNormalizedName() {
|
||||
final JaroWinklerNormalizedName jaroWinklerNormalizedName = new JaroWinklerNormalizedName(params);
|
||||
double result = jaroWinklerNormalizedName.distance("universita degli studi di genova", "universita di genova");
|
||||
double result = jaroWinklerNormalizedName.distance("Universita di Pisa", "Universita di Parma");
|
||||
|
||||
System.out.println(result);
|
||||
assertEquals(result, 0.0);
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testLevensteinTitleIgnoreVersion() {
|
||||
final LevensteinTitleIgnoreVersion algo = new LevensteinTitleIgnoreVersion(params);
|
||||
double result = algo.distance("gCube data layer v1.0 XI", "gCube data layer v1.5 VIII");
|
||||
public void testJaroWinklerNormalizedName2() {
|
||||
|
||||
System.out.println(result);
|
||||
final JaroWinklerNormalizedName jaroWinklerNormalizedName = new JaroWinklerNormalizedName(params);
|
||||
double result = jaroWinklerNormalizedName.distance("University of New York", "Università di New York");
|
||||
|
||||
assertEquals(result, 1.0);
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testJaroWinklerNormalizedName3() {
|
||||
|
||||
final JaroWinklerNormalizedName jaroWinklerNormalizedName = new JaroWinklerNormalizedName(params);
|
||||
double result = jaroWinklerNormalizedName.distance("Biblioteca dell'Universita di Bologna", "Università di Bologna");
|
||||
|
||||
System.out.println("result = " + result);
|
||||
assertEquals(result, 0.0);
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testJaroWinklerNormalizedName4() {
|
||||
|
||||
final JaroWinklerNormalizedName jaroWinklerNormalizedName = new JaroWinklerNormalizedName(params);
|
||||
double result = jaroWinklerNormalizedName.distance("Universita degli studi di Pisa", "Universita di Pisa");
|
||||
|
||||
System.out.println("result = " + result);
|
||||
assertEquals(result, 1.0);
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testJaroWinklerNormalizedName5() {
|
||||
|
||||
final JaroWinklerNormalizedName jaroWinklerNormalizedName = new JaroWinklerNormalizedName(params);
|
||||
double result = jaroWinklerNormalizedName.distance("RESEARCH PROMOTION FOUNDATION", "IDRYMA PROOTHISIS EREVNAS");
|
||||
|
||||
System.out.println("result = " + result);
|
||||
assertEquals(result, 1.0);
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testJaroWinklerNormalizedName6() {
|
||||
|
||||
final JaroWinklerNormalizedName jaroWinklerNormalizedName = new JaroWinklerNormalizedName(params);
|
||||
double result = jaroWinklerNormalizedName.distance("Fonds zur Förderung der wissenschaftlichen Forschung (Austrian Science Fund)", "Fonds zur Förderung der wissenschaftlichen Forschung");
|
||||
|
||||
System.out.println("result = " + result);
|
||||
assertTrue(result> 0.9);
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
|||
|
|
@ -0,0 +1,36 @@
|
|||
{
|
||||
"wf" : {
|
||||
"threshold" : "0.9",
|
||||
"dedupRun" : "001",
|
||||
"entityType" : "organization",
|
||||
"orderField" : "legalname",
|
||||
"queueMaxSize" : "2000",
|
||||
"groupMaxSize" : "10",
|
||||
"slidingWindowSize" : "200",
|
||||
"rootBuilder" : [ "organization", "projectOrganization_participation_isParticipant", "datasourceOrganization_provision_isProvidedBy" ],
|
||||
"includeChildren" : "true"
|
||||
},
|
||||
"pace" : {
|
||||
"clustering" : [
|
||||
{ "name" : "sortedngrampairs", "fields" : [ "legalname" ], "params" : { "max" : 2, "ngramLen" : "3"} },
|
||||
{ "name" : "suffixprefix", "fields" : [ "legalname" ], "params" : { "max" : 1, "len" : "3" } },
|
||||
{ "name" : "urlclustering", "fields" : [ "websiteurl" ], "params" : { } }
|
||||
],
|
||||
"strictConditions" : [
|
||||
{ "name" : "exactMatch", "fields" : [ "gridid" ] }
|
||||
],
|
||||
"conditions" : [
|
||||
{ "name" : "exactMatch", "fields" : [ "country" ] },
|
||||
{ "name" : "DomainExactMatch", "fields" : [ "websiteurl" ] }
|
||||
],
|
||||
"model" : [
|
||||
{ "name" : "legalname", "algo" : "Null", "type" : "String", "weight" : "0", "ignoreMissing" : "false", "path" : "organization/metadata/legalname/value" },
|
||||
{ "name" : "country", "algo" : "Null", "type" : "String", "weight" : "0", "ignoreMissing" : "true", "path" : "organization/metadata/country/classid" },
|
||||
{ "name" : "legalshortname", "algo" : "JaroWinklerNormalizedName", "type" : "String", "weight" : "0.1", "ignoreMissing" : "true", "path" : "organization/metadata/legalshortname/value" },
|
||||
{ "name" : "legalname", "algo" : "JaroWinklerNormalizedName", "type" : "String", "weight" : "0.9", "ignoreMissing" : "false", "path" : "organization/metadata/legalname/value", "params" : {"windowSize" : 4, "threshold" : 0.5} },
|
||||
{ "name" : "websiteurl", "algo" : "Null", "type" : "URL", "weight" : "0", "ignoreMissing" : "true", "path" : "organization/metadata/websiteurl/value", "params" : { "host" : 0.5, "path" : 0.5 } },
|
||||
{ "name" : "gridid", "algo" : "Null", "type" : "String", "weight" : "0.0", "ignoreMissing" : "true", "path" : "pid[qualifier#classid = {grid}]/value" }
|
||||
],
|
||||
"blacklists" : { }
|
||||
}
|
||||
}
|
||||
Loading…
Reference in New Issue