diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/sx/graph/bio/BioDBToOAF.scala b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/sx/graph/bio/BioDBToOAF.scala
index a19c6fb12..90b65c8f7 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/sx/graph/bio/BioDBToOAF.scala
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/sx/graph/bio/BioDBToOAF.scala
@@ -199,7 +199,7 @@ object BioDBToOAF {
d.setDateofacceptance(OafMapperUtils.field(i_date.get.date, DATA_INFO))
}
val relevant_dates: List[StructuredProperty] = dates.filter(d => !d.date_info.contains("entry version"))
- .map(date => OafMapperUtils.structuredProperty(date.date, "UNKNOWN", "UNKNOWN", ModelConstants.DNET_DATACITE_DATE, ModelConstants.DNET_DATACITE_DATE, DATA_INFO))
+ .map(date => OafMapperUtils.structuredProperty(date.date, ModelConstants.UNKNOWN, ModelConstants.UNKNOWN, ModelConstants.DNET_DATACITE_DATE, ModelConstants.DNET_DATACITE_DATE, DATA_INFO))
if (relevant_dates != null && relevant_dates.nonEmpty)
d.setRelevantdate(relevant_dates.asJava)
d.setDateofacceptance(OafMapperUtils.field(i_date.get.date, DATA_INFO))
@@ -218,12 +218,12 @@ object BioDBToOAF {
if (references_pmid != null && references_pmid.nonEmpty) {
- val rel = createRelation(references_pmid.head, "pmid", d.getId, collectedFromMap("uniprot"), "relationship", "isRelatedTo", if (i_date.isDefined) i_date.get.date else null)
+ val rel = createRelation(references_pmid.head, "pmid", d.getId, collectedFromMap("uniprot"), ModelConstants.RELATIONSHIP, ModelConstants.IS_RELATED_TO, if (i_date.isDefined) i_date.get.date else null)
rel.getCollectedfrom
List(d, rel)
}
else if (references_doi != null && references_doi.nonEmpty) {
- val rel = createRelation(references_doi.head, "doi", d.getId, collectedFromMap("uniprot"), "relationship", "isRelatedTo", if (i_date.isDefined) i_date.get.date else null)
+ val rel = createRelation(references_doi.head, "doi", d.getId, collectedFromMap("uniprot"), ModelConstants.RELATIONSHIP, ModelConstants.IS_RELATED_TO, if (i_date.isDefined) i_date.get.date else null)
List(d, rel)
}
else
@@ -243,7 +243,7 @@ object BioDBToOAF {
rel.setCollectedfrom(List(collectedFromMap("pdb")).asJava)
rel.setDataInfo(DATA_INFO)
- rel.setRelType("resultResult")
+ rel.setRelType(ModelConstants.RESULT_RESULT)
rel.setSubRelType(subRelType)
rel.setRelClass(relClass)
@@ -263,7 +263,7 @@ object BioDBToOAF {
def createSupplementaryRelation(pid: String, pidType: String, sourceId: String, collectedFrom: KeyValue, date:String): Relation = {
- createRelation(pid,pidType,sourceId,collectedFrom, "supplement","IsSupplementTo", date)
+ createRelation(pid,pidType,sourceId,collectedFrom, ModelConstants.SUPPLEMENT, ModelConstants.IS_SUPPLEMENT_TO, date)
}
@@ -392,6 +392,6 @@ object BioDBToOAF {
i.setDateofacceptance(OafMapperUtils.field(GraphCleaningFunctions.cleanDate(input.date), DATA_INFO))
d.setDateofacceptance(OafMapperUtils.field(GraphCleaningFunctions.cleanDate(input.date), DATA_INFO))
- List(d, createRelation(input.pmid, "pmid", d.getId, collectedFromMap("ebi"),"relationship", "isRelatedTo", GraphCleaningFunctions.cleanDate(input.date)))
+ List(d, createRelation(input.pmid, "pmid", d.getId, collectedFromMap("ebi"), ModelConstants.RELATIONSHIP, ModelConstants.IS_RELATED_TO, GraphCleaningFunctions.cleanDate(input.date)))
}
}
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/sx/graph/bio/pubmed/PubMedToOaf.scala b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/sx/graph/bio/pubmed/PubMedToOaf.scala
index ae4a72062..9a49deebc 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/sx/graph/bio/pubmed/PubMedToOaf.scala
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/sx/graph/bio/pubmed/PubMedToOaf.scala
@@ -16,7 +16,7 @@ object PubMedToOaf {
)
def createResult(cobjQualifier: Qualifier, vocabularies: VocabularyGroup): Result = {
- val result_typologies = getVocabularyTerm("dnet:result_typologies", vocabularies, cobjQualifier.getClassid)
+ val result_typologies = getVocabularyTerm(ModelConstants.DNET_RESULT_TYPOLOGIES, vocabularies, cobjQualifier.getClassid)
result_typologies.getClassid match {
case "dataset" => new Dataset
case "publication" => new Publication
@@ -68,11 +68,11 @@ object PubMedToOaf {
//else We have to find a terms that match the vocabulary otherwise we discard it
val ja = article.getPublicationTypes.asScala.find(s => "Journal Article".equalsIgnoreCase(s.getValue))
if (ja.isDefined) {
- val cojbCategory = getVocabularyTerm("dnet:publication_resource", vocabularies, ja.get.getValue)
+ val cojbCategory = getVocabularyTerm(ModelConstants.DNET_PUBLICATION_RESOURCE, vocabularies, ja.get.getValue)
i.setInstancetype(cojbCategory)
} else {
val i_type = article.getPublicationTypes.asScala
- .map(s => getVocabularyTerm("dnet:publication_resource", vocabularies, s.getValue))
+ .map(s => getVocabularyTerm(ModelConstants.DNET_PUBLICATION_RESOURCE, vocabularies, s.getValue))
.find(q => q != null)
if (i_type.isDefined)
i.setInstancetype(i_type.get)
@@ -112,7 +112,7 @@ object PubMedToOaf {
if (article.getLanguage != null) {
- val term = vocabularies.getSynonymAsQualifier("dnet:languages", article.getLanguage)
+ val term = vocabularies.getSynonymAsQualifier(ModelConstants.DNET_LANGUAGES, article.getLanguage)
if (term != null)
result.setLanguage(term)
}
diff --git a/pom.xml b/pom.xml
index fc4a8a21b..433c88093 100644
--- a/pom.xml
+++ b/pom.xml
@@ -741,7 +741,7 @@
3.3.3
3.4.2
[2.12,3.0)
- [2.7.14]
+ [2.7.15]
[4.0.3]
[6.0.5]
[3.1.6]