forked from D-Net/dnet-hadoop
289 lines
14 KiB
XML
289 lines
14 KiB
XML
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<workflow-app name="fix Graph" xmlns="uri:oozie:workflow:0.5">
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<parameters>
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<property>
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<name>graphInputPath</name>
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<description>the input path to read graph content</description>
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</property>
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<property>
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<name>graphOutputPath</name>
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<description>the target path to store fixed graph</description>
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</property>
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<property>
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<name>isLookupUrl</name>
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<description>the address of the lookUp service</description>
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</property>
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<property>
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<name>sparkDriverMemory</name>
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<description>memory for driver process</description>
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</property>
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<property>
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<name>sparkExecutorMemory</name>
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<description>memory for individual executor</description>
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</property>
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<property>
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<name>sparkExecutorCores</name>
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<description>number of cores used by single executor</description>
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</property>
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<property>
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<name>oozieActionShareLibForSpark2</name>
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<description>oozie action sharelib for spark 2.*</description>
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</property>
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<property>
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<name>spark2ExtraListeners</name>
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<value>com.cloudera.spark.lineage.NavigatorAppListener</value>
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<description>spark 2.* extra listeners classname</description>
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</property>
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<property>
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<name>spark2SqlQueryExecutionListeners</name>
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<value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
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<description>spark 2.* sql query execution listeners classname</description>
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</property>
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<property>
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<name>spark2YarnHistoryServerAddress</name>
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<description>spark 2.* yarn history server address</description>
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</property>
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<property>
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<name>spark2EventLogDir</name>
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<description>spark 2.* event log dir location</description>
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</property>
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</parameters>
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<start to="fork_fix_graph"/>
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<kill name="Kill">
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<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
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</kill>
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<fork name="fork_fix_graph">
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<path start="fix_publication"/>
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<path start="fix_dataset"/>
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<path start="fix_otherresearchproduct"/>
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<path start="fix_software"/>
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<path start="fix_datasource"/>
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<path start="fix_organization"/>
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<path start="fix_project"/>
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<path start="fix_relation"/>
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</fork>
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<action name="fix_publication">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Fix publications</name>
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<class>eu.dnetlib.dhp.oa.graph.fix.FixGraphProperties</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCoresForJoining}
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--executor-memory=${sparkExecutorMemoryForJoining}
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--driver-memory=${sparkDriverMemoryForJoining}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.shuffle.partitions=7680
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--conf spark.network.timeout=${sparkNetworkTimeout}
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</spark-opts>
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<arg>--inputPath</arg><arg>${graphInputPath}/publication</arg>
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<arg>--outputPath</arg><arg>${graphOutputPath}/publication</arg>
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<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Publication</arg>
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<arg>--isLookupUrl</arg><arg>${isLookupUrl}</arg>
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</spark>
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<ok to="wait_fix"/>
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<error to="Kill"/>
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</action>
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<action name="fix_dataset">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Fix datasets</name>
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<class>eu.dnetlib.dhp.oa.graph.fix.FixGraphProperties</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCoresForJoining}
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--executor-memory=${sparkExecutorMemoryForJoining}
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--driver-memory=${sparkDriverMemoryForJoining}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.shuffle.partitions=7680
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--conf spark.network.timeout=${sparkNetworkTimeout}
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</spark-opts>
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<arg>--inputPath</arg><arg>${graphInputPath}/dataset</arg>
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<arg>--outputPath</arg><arg>${graphOutputPath}/dataset</arg>
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<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Dataset</arg>
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<arg>--isLookupUrl</arg><arg>${isLookupUrl}</arg>
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</spark>
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<ok to="wait_fix"/>
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<error to="Kill"/>
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</action>
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<action name="fix_otherresearchproduct">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Fix otherresearchproducts</name>
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<class>eu.dnetlib.dhp.oa.graph.fix.FixGraphProperties</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCoresForJoining}
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--executor-memory=${sparkExecutorMemoryForJoining}
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--driver-memory=${sparkDriverMemoryForJoining}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.shuffle.partitions=7680
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--conf spark.network.timeout=${sparkNetworkTimeout}
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</spark-opts>
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<arg>--inputPath</arg><arg>${graphInputPath}/otherresearchproduct</arg>
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<arg>--outputPath</arg><arg>${graphOutputPath}/otherresearchproduct</arg>
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<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.OtherResearchProduct</arg>
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<arg>--isLookupUrl</arg><arg>${isLookupUrl}</arg>
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</spark>
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<ok to="wait_fix"/>
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<error to="Kill"/>
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</action>
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<action name="fix_software">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Fix softwares</name>
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<class>eu.dnetlib.dhp.oa.graph.fix.FixGraphProperties</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCoresForJoining}
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--executor-memory=${sparkExecutorMemoryForJoining}
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--driver-memory=${sparkDriverMemoryForJoining}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.shuffle.partitions=7680
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--conf spark.network.timeout=${sparkNetworkTimeout}
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</spark-opts>
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<arg>--inputPath</arg><arg>${graphInputPath}/software</arg>
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<arg>--outputPath</arg><arg>${graphOutputPath}/software</arg>
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<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Software</arg>
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<arg>--isLookupUrl</arg><arg>${isLookupUrl}</arg>
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</spark>
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<ok to="wait_fix"/>
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<error to="Kill"/>
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</action>
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<action name="fix_datasource">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Fix datasources</name>
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<class>eu.dnetlib.dhp.oa.graph.fix.FixGraphProperties</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCoresForJoining}
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--executor-memory=${sparkExecutorMemoryForJoining}
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--driver-memory=${sparkDriverMemoryForJoining}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.shuffle.partitions=7680
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--conf spark.network.timeout=${sparkNetworkTimeout}
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</spark-opts>
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<arg>--inputPath</arg><arg>${graphInputPath}/datasource</arg>
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<arg>--outputPath</arg><arg>${graphOutputPath}/datasource</arg>
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<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Datasource</arg>
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<arg>--isLookupUrl</arg><arg>${isLookupUrl}</arg>
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</spark>
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<ok to="wait_fix"/>
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<error to="Kill"/>
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</action>
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<action name="fix_organization">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Fix organizations</name>
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<class>eu.dnetlib.dhp.oa.graph.fix.FixGraphProperties</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCoresForJoining}
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--executor-memory=${sparkExecutorMemoryForJoining}
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--driver-memory=${sparkDriverMemoryForJoining}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.shuffle.partitions=7680
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--conf spark.network.timeout=${sparkNetworkTimeout}
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</spark-opts>
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<arg>--inputPath</arg><arg>${graphInputPath}/organization</arg>
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<arg>--outputPath</arg><arg>${graphOutputPath}/organization</arg>
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<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Organization</arg>
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<arg>--isLookupUrl</arg><arg>${isLookupUrl}</arg>
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</spark>
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<ok to="wait_fix"/>
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<error to="Kill"/>
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</action>
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<action name="fix_project">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Fix projects</name>
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<class>eu.dnetlib.dhp.oa.graph.fix.FixGraphProperties</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCoresForJoining}
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--executor-memory=${sparkExecutorMemoryForJoining}
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--driver-memory=${sparkDriverMemoryForJoining}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.shuffle.partitions=7680
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--conf spark.network.timeout=${sparkNetworkTimeout}
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</spark-opts>
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<arg>--inputPath</arg><arg>${graphInputPath}/project</arg>
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<arg>--outputPath</arg><arg>${graphOutputPath}/project</arg>
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<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Project</arg>
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<arg>--isLookupUrl</arg><arg>${isLookupUrl}</arg>
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</spark>
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<ok to="wait_fix"/>
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<error to="Kill"/>
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</action>
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<action name="fix_relation">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Fix relations</name>
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<class>eu.dnetlib.dhp.oa.graph.fix.FixGraphProperties</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCoresForJoining}
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--executor-memory=${sparkExecutorMemoryForJoining}
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--driver-memory=${sparkDriverMemoryForJoining}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.shuffle.partitions=7680
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--conf spark.network.timeout=${sparkNetworkTimeout}
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</spark-opts>
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<arg>--inputPath</arg><arg>${graphInputPath}/relation</arg>
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<arg>--outputPath</arg><arg>${graphOutputPath}/relation</arg>
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<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Relation</arg>
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<arg>--isLookupUrl</arg><arg>${isLookupUrl}</arg>
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</spark>
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<ok to="wait_fix"/>
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<error to="Kill"/>
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</action>
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<join name="wait_fix" to="End"/>
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<end name="End"/>
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</workflow-app>
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