From df026bcba4ed5973a868936e4e56b40ced81e574 Mon Sep 17 00:00:00 2001 From: Sandro La Bruzzo Date: Wed, 2 Nov 2022 14:42:56 +0100 Subject: [PATCH] Added EBI --- docs/data-provision/aggregation/ebi.md | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) create mode 100644 docs/data-provision/aggregation/ebi.md diff --git a/docs/data-provision/aggregation/ebi.md b/docs/data-provision/aggregation/ebi.md new file mode 100644 index 0000000..11a8507 --- /dev/null +++ b/docs/data-provision/aggregation/ebi.md @@ -0,0 +1,18 @@ +# EMBL-EBIs Protein Data Bank in Europe + +This section describes the mapping implemented for [EMBL-EBIs Protein Data Bank in Europe](https://www.ebi.ac.uk/). + +The Europe PMC RESTful Web Service gives the [datalinks API](https://europepmc.org/RestfulWebService#!/Europe32PMC32Articles32RESTful32API)to retrieve data-literature links in Scholix format . + +## how data is collected +Starting from the Pubmed collection, we exploit this API to get all the related bioentities related to a Publication with a specific PubMed identifier. + +Following this request: `https://www.ebi.ac.uk/europepmc/webservices/rest/MED/$PMID/datalinks?format=json` we store for each pubmedID the links related. + + +## Mapping +The table below describes the mapping from the EBI links records to the OpenAIRE Graph dump format. + + +| *OpenAIRE Result field path* | PubMed record field xpath | Notes | +|--------------------------------|--------------------------------|---------------------------------------------------------------------------------------------------------------------------------------------------------------| \ No newline at end of file