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organization dedup

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Claudio Atzori 2022-11-08 10:13:02 +01:00
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docs/data-provision/deduplication/organizations.md
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The organizations in OpenAIRE are aggregated from different registries (e.g. CORDA, OpenDOAR, Re3data, ROR). In some cases, a registry provides organizations as entities with their own persistent identifier. In other cases, those organizations are extracted from other main entities provided by the registry (e.g. datasources, projects, etc.).
The deduplication of organizations is enhanced by the OpenOrgs Database, a tool that allow the NOADs (i.e. the National OpenAccess Desks) to support the deduplication algorithm by providing feedbacks on organization relations and curate organization entities (e.g. legalname, pid, etc.).
The deduplication of organizations is enhanced by the [OpenOrgs](https://orgs.openaire.eu), a tool that combines an automated approach for identifying duplicated instances
of the same organization record with a "humans in the loop" approach, in which the equivalences produced by a duplicate identification algorithm are suggested to data curators, in charge for validating them.
The data curation activity is twofold, on one end pivots around the disambiguation task, on the other hand assumes to improve the metadata describing the organization records
(e.g. including the translated name, or a different PID) as well as defining the hierarchical structure of existing large organizations (i.e. Universities comprising its departments or large research centers with all its sub-units or sub-institutes).
Duplicates among organizations are therefore managed through three different stages:
* *Creation of Suggestions*: executes an automatic workflow that performs the deduplication and prepare new suggestions for the NOADs to be processed in the OpenOrgs Database;
* *Curation by the NOADs*: manual curation of the organizations performed by the NOADs through the OpenOrgs Database;
* *Creation of Representative Organizations*: executes an automatic workflow that creates curated organizations and exposes them on the OpenAIRE Research Graph by using the NOADs' feedback from the OpenOrgs Database.
Note that these are not meant to be sequential, each workflow can be executed independently from the other.
* *Creation of Suggestions*: executes an automatic workflow that performs the deduplication and prepare new suggestions for the curators to be processed;
* *Curation*: manual editing of the organization records performed by the data curators;
* *Creation of Representative Organizations*: executes an automatic workflow that creates curated organizations and exposes them on the OpenAIRE Research Graph by using the curators' feedback from the OpenOrgs underlying database.
The next sections describe the above mentioned stages.
### Creation of Suggestions
This stage executes an automatic workflow that faces the *candidate identification* and the *duplicates identification* stages of the deduplication to provide suggestions for the NOADs in the OpenOrgs Database.
This stage executes an automatic workflow that faces the *candidate identification* and the *duplicates identification* stages of the deduplication to provide suggestions for the curators in the OpenOrgs.
#### Candidate identification (clustering)
To match the requirements of limiting the number of comparisons, OpenAIRE clustering for organizatins works with four functions:
* *URL-based function*: the function generates the URL domain when this is provided as part of the record properties;
To match the requirements of limiting the number of comparisons, OpenAIRE clustering for organizations aims at grouping records that would more likely be comparable.
It works with four functions:
* *URL-based function*: the function generates the URL domain when this is provided as part of the record properties from the organization's `websiteurl` field;
* *Title-based functions*:
* generate strings dependent to the keywords in the legalname;
* generate strings obtained as an alternation of the function prefix(3) and suffix(3) (and vice versa) on the first 3 words of the legalname;
* generate strings obtained as a concatenation of ngrams of the legalname;
* generate strings dependent to the keywords in the `legalname` field;
* generate strings obtained as an alternation of the function prefix(3) and suffix(3) (and vice versa) on the first 3 words of the `legalname` field;
* generate strings obtained as a concatenation of ngrams of the `legalname` field;
#### Duplicates identification (pair-wise comparisons)
For each pair of organization in a cluster the following strategy (depicted in the figure below) is applied.
The comparison goes through different stages:
The comparison goes through the following decision tree:
1. *grid id check*: comparison of the grid ids. If the grid id is equivalent, then the similarity relation is drawn. If the grid id is not available, the comparison proceeds to the next stage;
2. *early exits*: comparison of the numbers in the legalname, the country and the website url. No similarity relation is drawn in this stage, the comparison proceeds only if the compared fields verified the conditions of equivalence;
3. *city check*: comparison of the city names in the legalname. The comparison proceeds only if the legalnames shares at least 10% of cities;
4. *keyword check*: comparison of the keywords in the legalname. The comparison proceeds only if the legalnames shares at least 70% of keywords;
5. *legalname check*: comparison of the normalized legalnames with the Jaro Winkler distance to determine if it is higher than 0.9. If so, a similarity relation is drawn. Otherwise, no similarity relation is drawn.
2. *early exits*: comparison of the numbers extracted from the `legalname`, the `country` and the `website` url. No similarity relation is drawn in this stage, the comparison proceeds only if the compared fields verified the conditions of equivalence;
3. *city check*: comparison of the city names in the `legalname`. The comparison proceeds only if the legalnames shares at least 10% of cities;
4. *keyword check*: comparison of the keywords in the `legalname`. The comparison proceeds only if the legalnames shares at least 70% of keywords;
5. *legalname check*: comparison of the normalized `legalnames` with the `Jaro-Winkler` distance to determine if it is higher than `0.9`. If so, a similarity relation is drawn. Otherwise, no similarity relation is drawn.
<p align="center">
<img loading="lazy" alt="Organization Decision Tree" src="/img/docs/decisiontree-organization.png" width="100%" className="img_node_modules-@docusaurus-theme-classic-lib-theme-MDXComponents-Img-styles-module"/>
</p>
### Curation by the NOADs
### Data Curation
All the similarity relations drawn by the algorithm involving the decision tree are exposed on the OpenOrgs Database, which can be used by the NOADs to give feedbacks and to curate organizations.
A NOAD can:
All the similarity relations drawn by the algorithm involving the decision tree are exposed in OpenOrgs, where are made available to the data curators to give feedbacks and to improve the organizations metadata.
A data curator can:
* *edit organization metadata*: legalname, pid, country, url, parent relations, etc.;
* *approve suggested duplicates*: establish if a similarity relation is valid;
* *discard suggested duplicates*: establish if a similarity relation is wrong;
* *create similarity relations*: add a new similarity relation not drawn by the algorithm.
* *approve suggested duplicates*: establish if an equivalence relation is valid;
* *discard suggested duplicates*: establish if an equivalence relation is wrong;
* *create similarity relations*: add a new equivalence relation not drawn by the algorithm.
Note that if a NOAD does not provide a feedback on a similarity relation suggested by the algorithm, then such relation is considered as valid.
Note that if a curator does not provide a feedback on a similarity relation suggested by the algorithm, then such relation is considered as valid.
### Creation of Representative Organizations
This stage executes an automatic workflow that faces the *duplicates grouping* stage to create representative organizations and to expose them on the OpenAIRE Research Graph. Such organizations are obtained via transitive closure and relations used comes from the NOADs' feedback collected through the OpenOrgs Database.
This stage executes an automatic workflow that faces the *duplicates grouping* stage to create representative organizations and to update them on the OpenAIRE Research Graph. Such organizations are obtained via transitive closure and the relations used comes from the curators' feedback gathered on the OpenOrgs underlying Database.
#### Duplicates grouping (transitive closure)
Once the similarity relations between pairs of organizations have been collected, the groups of equivalent organizations are obtained (transitive closure, i.e. “mesh”). From such sets a new representative organization is obtained, which inherits all properties from the merged records and keeps track of their provenance.
Once the similarity relations between pairs of organizations have been gathered, the groups of equivalent organizations are obtained (transitive closure, i.e. “mesh”). From such sets a new representative organization is obtained, which inherits all properties from the merged records and keeps track of their provenance.
The IDs of the representative organizations are obtained by the OpenOrgs Database that creates a unique ``openorgs`` ID for each approved organization. In case an organization is not approved by the NOAD, the ID is obtained by appending the prefix ``pending_org`` to the MD5 of the first ID (given their lexicographical ordering).
The IDs of the representative organizations are obtained by the OpenOrgs Database that creates a unique ``openorgs`` ID for each approved organization. In case an organization is not approved by the curators, the ID is obtained by appending the prefix ``pending_org`` to the MD5 of the first ID (given their lexicographical ordering).