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Author SHA1 Message Date
Claudio Atzori 6be783caec [graph cleaning] use sparkExecutorMemory to define also the memoryOverhead 2024-05-29 14:36:49 +02:00
Claudio Atzori b703f94f09 Merge pull request 'changes in copy script - beta2master' (#439) from antonis.lempesis/dnet-hadoop:beta into beta_to_master_may2024 
Reviewed-on: D-Net/dnet-hadoop#439
 2024-05-29 14:29:26 +02:00
Miriam Baglioni 14f275ffaf [NOAMI] removed Ireland funder id 501100011103. ticket 9635 2024-05-29 11:54:17 +02:00
Lampros Smyrnaios e3f28338c1 Miscellaneous updates to the copying operation to Impala Cluster: 
- Assign the WRITE and EXECUTE permissions to the DBs' HDFS-directories, in order to be able to create tables on top of them, in the Impala Cluster.
- Make sure the "copydb" function returns early, when it encounters a fatal error, while respecting the "SHOULD_EXIT_WHOLE_SCRIPT_UPON_ERROR" config.
 2024-05-28 17:51:45 +03:00
Claudio Atzori 8e45c5baa8 graph cleaning to implement ugly hardcoded rules 2024-05-28 15:28:42 +02:00
Claudio Atzori db5e18c784 hostedby patching to work with the updated Crossref contents 2024-05-28 15:28:13 +02:00
Claudio Atzori fb266efbcb [org dedup] avoid NPEs in SparkPrepareNewOrgs 2024-05-26 21:23:30 +02:00
Claudio Atzori d7daf54333 [org dedup] avoid NPEs in SparkPrepareOrgRels 2024-05-26 16:48:11 +02:00
Claudio Atzori f99eaa0376 Merge branch 'beta_to_master_may2024' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta_to_master_may2024 2024-05-26 15:45:41 +02:00
Claudio Atzori 23312fcc1e [org dedup] avoid NPEs in SparkPrepareOrgRels 2024-05-26 15:43:24 +02:00
Miriam Baglioni b864f0adcf Update to include a blackList that filters out the results we know are wrongly associated to IE - update workflow definition - the blacklist parameter 2024-05-24 16:01:19 +02:00
Miriam Baglioni 7a44869d87 Update to include a blackList that filters out the results we know are wrongly associated to IE - refactoring 2024-05-24 15:23:42 +02:00
Miriam Baglioni 12ffde023f Update to include a blackList that filters out the results we know are wrongly associated to IE 2024-05-24 12:28:24 +02:00
Antonis Lempesis 15b54a345a added fos lvl4 2024-05-24 13:21:28 +03:00
Lampros Smyrnaios b48ed6e617 Change configuration in the copy-operation to Impala Cluster: 
Set the "SHOULD_EXIT_WHOLE_SCRIPT_UPON_ERROR" parameter to "false".
 2024-05-23 16:58:12 +03:00
Lampros Smyrnaios 68322843e2 Small updates to the copy-operation to Impala Cluster: 
- Add a configuration-"switch" to control whether the script exits upon an error or not.
- Allow the script to exit when a table could not be created.
- Show the elapsed time for processing each database.
 2024-05-23 15:07:49 +03:00
Lampros Smyrnaios c7b32bbacc Update CopyDataToImpalaCluster: 
Update the code of acquiring the entities from Ocean cluster, through hive, in order to optimize the process and account for additional reserved keywords in Impala.

Co-authored-by: Antonis Lempesis <antleb@di.uoa.gr>
 2024-05-23 13:00:19 +03:00
Claudio Atzori c3fe59bc78 fixed conflicts merging from beta, code formatting 2024-05-21 14:50:40 +02:00
Claudio Atzori 1ea67eba82 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2024-05-21 13:48:48 +02:00
Claudio Atzori 834461ba26 [graph provision]fixed wf definition, revised serialization of the usage counts measures 2024-05-21 13:48:06 +02:00
Sandro La Bruzzo 032bcc8279 since last beta workflow we decide to introduce in the graph only MAG item with DOI and set them invisible ( this should be the same behaviour of the previous DOIBoost mapping). 
This commit apply this type of mapping
 2024-05-20 09:24:15 +02:00
Claudio Atzori 92f018d196 [graph provision] fixed path pointing to an intermediate data store in the working directory 2024-05-15 15:39:18 +02:00
Claudio Atzori 0611c81a2f [graph provision] using Qualifier.classNames to populate the correponsing fields in the JSON payload 2024-05-15 15:33:10 +02:00
Claudio Atzori 1efe7f7e39 [graph provision] upgrade to dhp-schema:6.1.2, included project.oamandatepublications in the JSON payload mapping, fixed serialisation of the usageCounts measures 2024-05-14 12:39:31 +02:00
Claudio Atzori f7d56e2ef2 Merge branch 'beta' into rest-collector-plugin-with-retry 2024-05-10 09:02:21 +02:00
Claudio Atzori dc3a5858f7 Merge branch 'beta' into beta_provision_relation 2024-05-09 14:14:43 +02:00
Claudio Atzori 55f39f7850 [graph provision] adds the possibility to validate the XML records before storing them via the validateXML parameter 2024-05-09 14:06:04 +02:00
Claudio Atzori 39a2afe8b5 [graph provision] fixed XML serialization of the usage counts measures, renamed workflow actions to better reflect their role 2024-05-09 13:54:42 +02:00
Claudio Atzori 908ed9da7a Merge pull request 'Various fixes in the stats wf' (#430) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: D-Net/dnet-hadoop#430
 2024-05-08 13:41:02 +02:00
Antonis Lempesis 0cada3cc8f every step is run in the analytics queue. Hardcoded for now, will make a parameter later 2024-05-08 13:42:53 +03:00
Antonis Lempesis 90a4fb3547 fixed typos 2024-05-08 13:17:58 +03:00
Claudio Atzori 18aa323ee9 cleanup unused classes, adjustments in the oozie wf definition 2024-05-08 11:36:46 +02:00
Claudio Atzori b4e3389432 fixed property mapping creating the RelatedEntity transient objects. spark cores & memory adjustments. Code formatting 2024-05-07 16:25:17 +02:00
Giambattista Bloisi 711048ceed PrepareRelationsJob rewritten to use Spark Dataframe API and Windowing functions 2024-05-07 15:44:33 +02:00
Claudio Atzori 26363060ed fixed id prefix creation for the fosnodoi records, again 2024-05-03 15:53:52 +02:00
Claudio Atzori 0486227185 [cleaning] deactivating the cleaning of FOS subjects found in the metadata provided by repositories 2024-05-03 14:31:12 +02:00
Claudio Atzori e1a0fb8933 fixed id prefix creation for the fosnodoi records 2024-05-03 14:14:18 +02:00
Claudio Atzori 4355f64810 reverted to version 1.2.5-SNAPSHOT 2024-05-02 11:23:53 +02:00
Claudio Atzori 66680b8b9a refactoring of common utilities 2024-05-02 11:16:58 +02:00
Claudio Atzori dcf23b3d06 Merge branch 'beta' into beta-release-1.2.5 2024-05-02 10:01:49 +02:00
Michele Artini f4068de298 code reindent + tests 2024-05-02 09:51:33 +02:00
Claudio Atzori 11bd89e132 [enrichment] use sparkExecutorMemory to define also the memoryOverhead 2024-05-01 08:32:59 +02:00
Claudio Atzori e96c2c1606 [ranking wf] set spark.executor.memoryOverhead to fine tune the resource consumption 2024-04-30 16:23:25 +02:00
Claudio Atzori 50c18f7a0b [dedup wf] revised memory settings to address the increased volume of input contents 2024-04-30 12:34:16 +02:00
Michele Artini 2615136efc added a retry mechanism 2024-04-30 11:58:42 +02:00
Claudio Atzori e2937db385 Merge branch 'beta' into misc_fixes_merge_entities 2024-04-24 08:55:28 +02:00
Giambattista Bloisi 1878199dae Miscellaneous fixes: 
- in Merge By ID pick by preference those records coming from delegated Authorities
- fix various tests
- close spark session in SparkCreateSimRels
 2024-04-24 08:12:45 +02:00
Lampros Smyrnaios 49af2e5740 Miscellaneous updates to the copying operation to Impala Cluster: 
- Update the algorithm for creating views that depend on other views; overcome some bash-instabilities.
- Upon any error, fail the whole process, not just the current DB-creation, as those errors usually indicate a bug in the initial DB-creation, that should be fixed immediately.
- Enhance parallel-copy of large files by "hadoop distcp" command.
- Reduce the "invalidate metadata" commands to just the current DB's tables, in order to eliminate the general overhead on Impala.
- Show the number of tables and views in the logs.
- Fix some log-messages.
 2024-04-23 17:15:04 +03:00
Antonis Lempesis d2649a1429 increased the jvm ram 2024-04-23 16:03:16 +03:00
Claudio Atzori c3053ef34d using version 1.2.5-beta for the release 2024-04-23 14:52:32 +02:00