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25 Commits

Author SHA1 Message Date
Lampros Smyrnaios 66cd28f70a - Fix not using the "export HADOOP_USER_NAME" statement in "createPDFsAggregated.sh", which caused permission-issues when creating tables with Impala.
- Remove unused "--user" parameter in "impala-shell" calls.
- Code polishing.
2024-06-20 14:33:46 +03:00
Lampros Smyrnaios ff335578ea Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2024-06-18 14:52:31 +03:00
Lampros Smyrnaios 3095047e5e Miscellaneous updates to the copying operation to Impala Cluster:
- Fix not breaking out of the VIEWS-infinite-loop when the "SHOULD_EXIT_WHOLE_SCRIPT_UPON_ERROR" is set to "false".
- Exit the script when no HDFS-active-node was found, independently of the "SHOULD_EXIT_WHOLE_SCRIPT_UPON_ERROR".
- Fix view_name-recognition in a log-message, by using the more advanced "Perl-Compatible Regular Expressions" in "grep".
- Add error-handling for "compute stats" errors.
2024-06-18 14:40:41 +03:00
Lampros Smyrnaios d942a1101b Miscellaneous updates to the copying operation to Impala Cluster:
- Show some counts and the elapsed time for various sub-tasks.
- Code polishing.
2024-06-14 12:14:38 +03:00
Claudio Atzori 62716141c5 Merge pull request 'Miscellaneous updates to the copying operation to Impala Cluster' (#440) from antonis.lempesis/dnet-hadoop:beta into beta
Reviewed-on: D-Net/dnet-hadoop#440
2024-05-29 14:34:51 +02:00
Lampros Smyrnaios e3f28338c1 Miscellaneous updates to the copying operation to Impala Cluster:
- Assign the WRITE and EXECUTE permissions to the DBs' HDFS-directories, in order to be able to create tables on top of them, in the Impala Cluster.
- Make sure the "copydb" function returns early, when it encounters a fatal error, while respecting the "SHOULD_EXIT_WHOLE_SCRIPT_UPON_ERROR" config.
2024-05-28 17:51:45 +03:00
Claudio Atzori 66548e6a83 Merge pull request 'changes in copy script' (#438) from antonis.lempesis/dnet-hadoop:beta into beta
Reviewed-on: D-Net/dnet-hadoop#438
2024-05-27 11:54:03 +02:00
Lampros Smyrnaios b48ed6e617 Change configuration in the copy-operation to Impala Cluster:
Set the "SHOULD_EXIT_WHOLE_SCRIPT_UPON_ERROR" parameter to "false".
2024-05-23 16:58:12 +03:00
Lampros Smyrnaios 68322843e2 Small updates to the copy-operation to Impala Cluster:
- Add a configuration-"switch" to control whether the script exits upon an error or not.
- Allow the script to exit when a table could not be created.
- Show the elapsed time for processing each database.
2024-05-23 15:07:49 +03:00
Lampros Smyrnaios c7b32bbacc Update CopyDataToImpalaCluster:
Update the code of acquiring the entities from Ocean cluster, through hive, in order to optimize the process and account for additional reserved keywords in Impala.

Co-authored-by: Antonis Lempesis <antleb@di.uoa.gr>
2024-05-23 13:00:19 +03:00
Sandro La Bruzzo 66c1ffc866 merged again from beta (I hope for the last time) 2024-05-22 11:02:46 +02:00
Lampros Smyrnaios 49af2e5740 Miscellaneous updates to the copying operation to Impala Cluster:
- Update the algorithm for creating views that depend on other views; overcome some bash-instabilities.
- Upon any error, fail the whole process, not just the current DB-creation, as those errors usually indicate a bug in the initial DB-creation, that should be fixed immediately.
- Enhance parallel-copy of large files by "hadoop distcp" command.
- Reduce the "invalidate metadata" commands to just the current DB's tables, in order to eliminate the general overhead on Impala.
- Show the number of tables and views in the logs.
- Fix some log-messages.
2024-04-23 17:15:04 +03:00
Sandro La Bruzzo b84ad0c06e merged beta 2024-04-19 14:39:59 +02:00
Claudio Atzori 589bce3520 Merge pull request '[pBETA] Improvements to copying data from ocean to impala' (#421) from antonis.lempesis/dnet-hadoop:beta into beta
Reviewed-on: D-Net/dnet-hadoop#421
2024-04-16 14:22:32 +02:00
Lampros Smyrnaios d7da4f814b Minor updates to the copying operation to Impala Cluster:
- Improve logging.
- Code optimization/polishing.
2024-04-12 18:12:06 +03:00
Lampros Smyrnaios 14719dcd62 Miscellaneous updates to the copying operation to Impala Cluster:
- Update the algorithm for creating views that depend on other views.
- Add check for successful execution of the "hadoop distcp" command.
- Add a check for successful copy operation of all entities.
- Upon facing an error in a DB, exit the method, instead of the whole script.
- Improve logging.
- Code polishing.
2024-04-12 15:36:13 +03:00
Lampros Smyrnaios abf0b69f29 Upgrade the copying operation to Impala Cluster:
- Use only hive commands in the Ocean Cluster, as the "impala-shell" will be removed from there to free-up resources.
- Hugely improve the performance in every aspect of the copying process: a) speedup file-transferring and DB-deletion, b) eliminate permissions-assignment, "load" operations and "use $db" queries, c) retry only the "create view" statements and only as long as they depend on other non-created views, instead of trying to recreate all tables and views 5 consecutive times.
- Add error-checks for the creation of tables and views.
2024-04-11 17:12:12 +03:00
Claudio Atzori 26b97aa5ed Merge pull request '[BETA] fixed the result_country definition and updated the stats DB copy procedure' (#416) from antonis.lempesis/dnet-hadoop:beta into beta
Reviewed-on: D-Net/dnet-hadoop#416
2024-04-03 12:36:03 +02:00
Lampros Smyrnaios b7c8acc563 - Update the code which acquires the "IMPALA_HDFS_NODE", to test the "tmp"-dir, instead of the base-dir and introduce retries, to overcome potential file-system failures. This change was suggested by "Sebastian Tymkow" and "Grzegorz Bakalarski".
- Fix typos.
2024-04-03 13:15:37 +03:00
Claudio Atzori 730eaffc85 Merge pull request 'correctly selecting the active hdfs node for the impala cluster' (#405) from antonis.lempesis/dnet-hadoop:beta into beta
Reviewed-on: D-Net/dnet-hadoop#405
2024-03-26 12:07:46 +01:00
Lampros Smyrnaios bc8c97182d Automatically select the ACTIVE HDFS NODE for Impala cluster, in all "copyDataToImpalaCluster.sh" scripts. 2024-03-26 13:01:12 +02:00
Claudio Atzori ef52128c55 included new stats* workflows in parent pom list of modules, code formatting 2024-03-26 10:42:10 +01:00
Antonis Lempesis 3c79720342 fixed the irish result subset 2024-03-07 14:08:57 +02:00
dimitrispie 6b823100ae Update buildIrishMonitorDB.sql
New indicators added
2024-01-07 22:54:39 +02:00
dimitrispie ffdd03d2f4 Monitor Irish Stats WF
Parameters (with examples):
stats_db_name=openaire_beta_stats_20231208
monitor_irish_db_name=openaire_beta_stats_monitor_ie_20231208b
monitor_irish_db_prod_name=openaire_beta_stats_monitor_ie
graph_db_name=openaire_beta_20231208
monitor_irish_db_shadow_name=openaire_beta_stats_monitor_ie_shadow
hive_timeout=150000
hadoop_user_name=dnet.beta
resumeFrom=Step1-buildIrishMonitorDB
2023-12-22 11:05:24 +02:00