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5488 Commits

Author SHA1 Message Date
Miriam Baglioni 196fa55774 Merge remote-tracking branch 'origin/beta_to_master_may2024' into beta_to_master_may2024 2024-06-11 10:26:24 +02:00
Miriam Baglioni 50805e3fc1 [FoSActionSet]remove datainfo for the result. It is not needed (qualifier.classid = UPDATE) useless since subject do not go at the level of the instance 2024-06-11 10:25:46 +02:00
Claudio Atzori d39a1054b8 [actionset promotion] use sparkExecutorMemory to define also the memoryOverhead 2024-06-10 16:15:07 +02:00
Claudio Atzori 576efc1857 hostedby patching to work with the updated Crossref contents 2024-06-10 15:22:33 +02:00
Claudio Atzori efc1632e16 code formatting 2024-06-06 09:25:26 +02:00
Claudio Atzori 91b49366c6 [graph provision] align serialisation of the usage count measures to the agrred specifications 2024-06-05 16:34:40 +02:00
Claudio Atzori 5e05385d35 minor 2024-06-05 16:31:58 +02:00
Miriam Baglioni c4d9b5b9d2 [downloadsAndViews]update the test file to consider the new serialization for downloads and views 2024-06-05 16:30:15 +02:00
Miriam Baglioni bf9a5e6314 [downloadsAndViews]changed the test file to check the indicators are not there if their value is 0 2024-06-05 16:29:40 +02:00
Miriam Baglioni 9d79ddb3dd [bulkTag] fixed issue that made project disappear in graph_10_enriched 2024-06-05 16:20:40 +02:00
Miriam Baglioni 907aa28c6c [downloadsAndViews] fixed issue 2024-06-05 16:19:29 +02:00
Miriam Baglioni 3955ceaa76 [downloadsAndViews] changed the serialization for downloads and views 2024-06-05 16:18:46 +02:00
Miriam Baglioni 128c143394 {downloadsAndViews] extended test file with measures for downloads and views 2024-06-05 16:17:59 +02:00
Claudio Atzori 5133993ee5 Merge branch 'beta_to_master_may2024' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta_to_master_may2024 2024-06-05 12:17:48 +02:00
Claudio Atzori 5cf259a851 [graph2hive] use sparkExecutorMemory to define also the memoryOverhead 2024-06-05 12:17:16 +02:00
Claudio Atzori e1828fc60e Merge pull request '[PROD] Irish oaipmh exporter' (#444) from irish-oaipmh-exporter into beta_to_master_may2024 
Reviewed-on: D-Net/dnet-hadoop#444
 2024-06-05 10:56:20 +02:00
Claudio Atzori 81090ad593 [IE OAIPHM] added oozie workflow, minor changes, code formatting 2024-06-05 10:03:33 +02:00
Claudio Atzori 56920b447d Merge pull request 'Fix for missing collectedfrom after dedup' (#442) from fix_mergedcliquesort into beta_to_master_may2024 
Reviewed-on: D-Net/dnet-hadoop#442
 2024-06-03 15:34:01 +02:00
Giambattista Bloisi 3feab5d92d Fix MergeUtils.mergeGroup: it could get rid of some records and did not consider all PID authorities whilke sorting records. 
ResultTypeComparator is now renamed in MergeEntitiesComparator and can be used as a general comparator for merging groups of records
 2024-06-03 15:13:40 +02:00
Claudio Atzori 6be783caec [graph cleaning] use sparkExecutorMemory to define also the memoryOverhead 2024-05-29 14:36:49 +02:00
Claudio Atzori b703f94f09 Merge pull request 'changes in copy script - beta2master' (#439) from antonis.lempesis/dnet-hadoop:beta into beta_to_master_may2024 
Reviewed-on: D-Net/dnet-hadoop#439
 2024-05-29 14:29:26 +02:00
Miriam Baglioni 14f275ffaf [NOAMI] removed Ireland funder id 501100011103. ticket 9635 2024-05-29 11:54:17 +02:00
Claudio Atzori a428e7be7e graph cleaning to implement ugly hardcoded rules, avoid NPEs 2024-05-29 09:26:12 +02:00
Lampros Smyrnaios e3f28338c1 Miscellaneous updates to the copying operation to Impala Cluster: 
- Assign the WRITE and EXECUTE permissions to the DBs' HDFS-directories, in order to be able to create tables on top of them, in the Impala Cluster.
- Make sure the "copydb" function returns early, when it encounters a fatal error, while respecting the "SHOULD_EXIT_WHOLE_SCRIPT_UPON_ERROR" config.
 2024-05-28 17:51:45 +03:00
Claudio Atzori 8e45c5baa8 graph cleaning to implement ugly hardcoded rules 2024-05-28 15:28:42 +02:00
Claudio Atzori db5e18c784 hostedby patching to work with the updated Crossref contents 2024-05-28 15:28:13 +02:00
Claudio Atzori fb266efbcb [org dedup] avoid NPEs in SparkPrepareNewOrgs 2024-05-26 21:23:30 +02:00
Claudio Atzori d7daf54333 [org dedup] avoid NPEs in SparkPrepareOrgRels 2024-05-26 16:48:11 +02:00
Claudio Atzori f99eaa0376 Merge branch 'beta_to_master_may2024' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta_to_master_may2024 2024-05-26 15:45:41 +02:00
Claudio Atzori 23312fcc1e [org dedup] avoid NPEs in SparkPrepareOrgRels 2024-05-26 15:43:24 +02:00
Miriam Baglioni b864f0adcf Update to include a blackList that filters out the results we know are wrongly associated to IE - update workflow definition - the blacklist parameter 2024-05-24 16:01:19 +02:00
Miriam Baglioni 7a44869d87 Update to include a blackList that filters out the results we know are wrongly associated to IE - refactoring 2024-05-24 15:23:42 +02:00
Miriam Baglioni 12ffde023f Update to include a blackList that filters out the results we know are wrongly associated to IE 2024-05-24 12:28:24 +02:00
Antonis Lempesis 15b54a345a added fos lvl4 2024-05-24 13:21:28 +03:00
Lampros Smyrnaios b48ed6e617 Change configuration in the copy-operation to Impala Cluster: 
Set the "SHOULD_EXIT_WHOLE_SCRIPT_UPON_ERROR" parameter to "false".
 2024-05-23 16:58:12 +03:00
Lampros Smyrnaios 68322843e2 Small updates to the copy-operation to Impala Cluster: 
- Add a configuration-"switch" to control whether the script exits upon an error or not.
- Allow the script to exit when a table could not be created.
- Show the elapsed time for processing each database.
 2024-05-23 15:07:49 +03:00
Lampros Smyrnaios c7b32bbacc Update CopyDataToImpalaCluster: 
Update the code of acquiring the entities from Ocean cluster, through hive, in order to optimize the process and account for additional reserved keywords in Impala.

Co-authored-by: Antonis Lempesis <antleb@di.uoa.gr>
 2024-05-23 13:00:19 +03:00
Claudio Atzori c3fe59bc78 fixed conflicts merging from beta, code formatting 2024-05-21 14:50:40 +02:00
Claudio Atzori 1ea67eba82 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2024-05-21 13:48:48 +02:00
Claudio Atzori f9fb2fef6e Merge pull request 'Modification of Microsoft Academic Graph Mapping' (#435) from mag_only_doi into beta 
Reviewed-on: D-Net/dnet-hadoop#435
 2024-05-21 13:48:42 +02:00
Claudio Atzori 834461ba26 [graph provision]fixed wf definition, revised serialization of the usage counts measures 2024-05-21 13:48:06 +02:00
Sandro La Bruzzo 032bcc8279 since last beta workflow we decide to introduce in the graph only MAG item with DOI and set them invisible ( this should be the same behaviour of the previous DOIBoost mapping). 
This commit apply this type of mapping
 2024-05-20 09:24:15 +02:00
Claudio Atzori 92f018d196 [graph provision] fixed path pointing to an intermediate data store in the working directory 2024-05-15 15:39:18 +02:00
Claudio Atzori 0611c81a2f [graph provision] using Qualifier.classNames to populate the correponsing fields in the JSON payload 2024-05-15 15:33:10 +02:00
Michele Artini 2b3b5fe9a1 oai finalization and test 2024-05-15 14:13:16 +02:00
Claudio Atzori 1efe7f7e39 [graph provision] upgrade to dhp-schema:6.1.2, included project.oamandatepublications in the JSON payload mapping, fixed serialisation of the usageCounts measures 2024-05-14 12:39:31 +02:00
Claudio Atzori 53e7bb4336 Merge pull request 'rest-collector-plugin-with-retry' (#432) from rest-collector-plugin-with-retry into beta 
Reviewed-on: D-Net/dnet-hadoop#432
 2024-05-10 09:02:33 +02:00
Claudio Atzori f7d56e2ef2 Merge branch 'beta' into rest-collector-plugin-with-retry 2024-05-10 09:02:21 +02:00
Claudio Atzori c1237ab39e Merge pull request 'Fixes in Graph Provision' (#434) from beta_provision_relation into beta 
Reviewed-on: D-Net/dnet-hadoop#434
 2024-05-09 14:15:05 +02:00
Claudio Atzori dc3a5858f7 Merge branch 'beta' into beta_provision_relation 2024-05-09 14:14:43 +02:00