forked from D-Net/dnet-hadoop
Monitor Irish Stats WF
Parameters (with examples): stats_db_name=openaire_beta_stats_20231208 monitor_irish_db_name=openaire_beta_stats_monitor_ie_20231208b monitor_irish_db_prod_name=openaire_beta_stats_monitor_ie graph_db_name=openaire_beta_20231208 monitor_irish_db_shadow_name=openaire_beta_stats_monitor_ie_shadow hive_timeout=150000 hadoop_user_name=dnet.beta resumeFrom=Step1-buildIrishMonitorDB
This commit is contained in:
dimitrispie
parent
40b98d8182
commit
ffdd03d2f4
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<?xml version="1.0" encoding="UTF-8"?>
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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
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<parent>
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<artifactId>dhp-workflows</artifactId>
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<groupId>eu.dnetlib.dhp</groupId>
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<version>1.2.4-SNAPSHOT</version>
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</parent>
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<modelVersion>4.0.0</modelVersion>
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<artifactId>dhp-stats-monitor-irish</artifactId>
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<dependencies>
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<dependency>
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<groupId>org.apache.spark</groupId>
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<artifactId>spark-core_2.11</artifactId>
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</dependency>
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<dependency>
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<groupId>org.apache.spark</groupId>
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<artifactId>spark-sql_2.11</artifactId>
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</dependency>
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</dependencies>
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<build>
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<plugins>
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<plugin>
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<groupId>pl.project13.maven</groupId>
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<artifactId>git-commit-id-plugin</artifactId>
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<version>2.1.11</version>
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<configuration>
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<failOnNoGitDirectory>false</failOnNoGitDirectory>
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</configuration>
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</plugin>
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</plugins>
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</build>
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</project>
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<configuration>
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<property>
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<name>jobTracker</name>
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<value>${jobTracker}</value>
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</property>
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<property>
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<name>nameNode</name>
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<value>${nameNode}</value>
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</property>
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<property>
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<name>oozie.use.system.libpath</name>
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<value>true</value>
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</property>
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<property>
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<name>oozie.action.sharelib.for.spark</name>
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<value>spark2</value>
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</property>
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<property>
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<name>hive_metastore_uris</name>
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<value>thrift://iis-cdh5-test-m3.ocean.icm.edu.pl:9083</value>
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</property>
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<property>
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<name>hive_jdbc_url</name>
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<value>jdbc:hive2://iis-cdh5-test-m3.ocean.icm.edu.pl:10000/;UseNativeQuery=1;?spark.executor.memory=22166291558;spark.yarn.executor.memoryOverhead=3225;spark.driver.memory=15596411699;spark.yarn.driver.memoryOverhead=1228</value>
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</property>
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<property>
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<name>oozie.wf.workflow.notification.url</name>
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<value>{serviceUrl}/v1/oozieNotification/jobUpdate?jobId=$jobId%26status=$status</value>
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</property>
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</configuration>
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export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs
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export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami)
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if ! [ -L $link_folder ]
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then
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rm -Rf "$link_folder"
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ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder}
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fi
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export HADOOP_USER_NAME=$2
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function copydb() {
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db=$1
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FILE=("hive_wf_tmp_"$RANDOM)
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hdfs dfs -mkdir hdfs://impala-cluster-mn1.openaire.eu:8020/tmp/$FILE/
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# change ownership to impala
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# hdfs dfs -conf /etc/impala_cluster/hdfs-site.xml -chmod -R 777 /tmp/$FILE/${db}.db
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hdfs dfs -conf /etc/impala_cluster/hdfs-site.xml -chmod -R 777 /tmp/$FILE/
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# copy the databases from ocean to impala
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echo "copying $db"
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hadoop distcp -Dmapreduce.map.memory.mb=6144 -pb hdfs://nameservice1/user/hive/warehouse/${db}.db hdfs://impala-cluster-mn1.openaire.eu:8020/tmp/$FILE/
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hdfs dfs -conf /etc/impala_cluster/hdfs-site.xml -chmod -R 777 /tmp/$FILE/${db}.db
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# drop tables from db
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for i in `impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} --delimited -q "show tables"`;
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do
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`impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} -q "drop table $i;"`;
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done
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# drop views from db
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for i in `impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} --delimited -q "show tables"`;
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do
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`impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} -q "drop view $i;"`;
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done
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# delete the database
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impala-shell -i impala-cluster-dn1.openaire.eu -q "drop database if exists ${db} cascade";
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# create the databases
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impala-shell -i impala-cluster-dn1.openaire.eu -q "create database ${db}";
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impala-shell -q "INVALIDATE METADATA"
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echo "creating schema for ${db}"
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for (( k = 0; k < 5; k ++ )); do
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for i in `impala-shell -d ${db} --delimited -q "show tables"`;
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do
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impala-shell -d ${db} --delimited -q "show create table $i";
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done | sed 's/"$/;/' | sed 's/^"//' | sed 's/[[:space:]]\date[[:space:]]/`date`/g' | impala-shell --user $HADOOP_USER_NAME -i impala-cluster-dn1.openaire.eu -c -f -
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done
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# load the data from /tmp in the respective tables
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echo "copying data in tables and computing stats"
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for i in `impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} --delimited -q "show tables"`;
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do
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impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} -q "load data inpath '/tmp/$FILE/${db}.db/$i' into table $i";
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impala-shell -i impala-cluster-dn1.openaire.eu -d ${db} -q "compute stats $i";
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done
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# deleting the remaining directory from hdfs
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hdfs dfs -conf /etc/impala_cluster/hdfs-site.xml -rm -R /tmp/$FILE/${db}.db
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}
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MONITOR_DB=$1
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#HADOOP_USER_NAME=$2
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copydb $MONITOR_DB
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@ -0,0 +1,23 @@
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export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs
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export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami)
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if ! [ -L $link_folder ]
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then
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rm -Rf "$link_folder"
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ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder}
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fi
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SOURCE=$1
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PRODUCTION=$2
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echo ${SOURCE}
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echo ${PRODUCTION}
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#echo "Updating ${PRODUCTION} monitor database old cluster"
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#impala-shell -q "create database if not exists ${PRODUCTION}"
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#impala-shell -d ${PRODUCTION} -q "show tables" --delimited | sed "s/^/drop view if exists ${PRODUCTION}./" | sed "s/$/;/" | impala-shell -c -f -
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#impala-shell -d ${SOURCE} -q "show tables" --delimited | sed "s/\(.*\)/create view ${PRODUCTION}.\1 as select * from ${SOURCE}.\1;/" | impala-shell -c -f -
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echo "Updating ${PRODUCTION} monitor database"
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impala-shell -i impala-cluster-dn1.openaire.eu -q "create database if not exists ${PRODUCTION}"
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impala-shell -i impala-cluster-dn1.openaire.eu -d ${PRODUCTION} -q "show tables" --delimited | sed "s/^/drop view if exists ${PRODUCTION}./" | sed "s/$/;/" | impala-shell -i impala-cluster-dn1.openaire.eu -c -f -
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impala-shell -i impala-cluster-dn1.openaire.eu -d ${SOURCE} -q "show tables" --delimited | sed "s/\(.*\)/create view ${PRODUCTION}.\1 as select * from ${SOURCE}.\1;/" | impala-shell -i impala-cluster-dn1.openaire.eu -c -f -
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echo "Production monitor db ready!"
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export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs
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export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami)
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if ! [ -L $link_folder ]
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then
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rm -Rf "$link_folder"
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ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder}
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fi
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export SOURCE=$1
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export TARGET=$2
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export SHADOW=$3
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export SCRIPT_PATH=$4
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export GRAPHDB=$5
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export HIVE_OPTS="-hiveconf mapred.job.queue.name=analytics -hiveconf hive.spark.client.connect.timeout=120000ms -hiveconf hive.spark.client.server.connect.timeout=300000ms -hiveconf spark.executor.memory=19166291558 -hiveconf spark.yarn.executor.memoryOverhead=3225 -hiveconf spark.driver.memory=11596411699 -hiveconf spark.yarn.driver.memoryOverhead=1228"
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export HADOOP_USER_NAME="oozie"
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echo "Getting file from " $4
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hdfs dfs -copyToLocal $4
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#update Monitor DB IRISH
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#cat CreateDB.sql | sed "s/SOURCE/$1/g" | sed "s/TARGET/$2/g1" | sed "s/GRAPHDB/$3/g1" > foo
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cat buildIrishMonitorDB.sql | sed "s/SOURCE/$1/g" | sed "s/TARGET/$2/g1" | sed "s/GRAPHDB/$5/g1" > foo
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hive $HIVE_OPTS -f foo
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echo "Hive shell finished"
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drop database if exists TARGET cascade;
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create database if not exists TARGET;
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create view if not exists TARGET.category as select * from SOURCE.category;
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create view if not exists TARGET.concept as select * from SOURCE.concept;
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create view if not exists TARGET.context as select * from SOURCE.context;
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create view if not exists TARGET.country as select * from SOURCE.country;
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create view if not exists TARGET.countrygdp as select * from SOURCE.countrygdp;
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create view if not exists TARGET.creation_date as select * from SOURCE.creation_date;
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--create view if not exists TARGET.funder as select * from SOURCE.funder;
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create view if not exists TARGET.fundref as select * from SOURCE.fundref;
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create view if not exists TARGET.rndexpenditure as select * from SOURCE.rndexpediture;
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create view if not exists TARGET.rndgdpexpenditure as select * from SOURCE.rndgdpexpenditure;
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create view if not exists TARGET.doctoratestudents as select * from SOURCE.doctoratestudents;
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create view if not exists TARGET.totalresearchers as select * from SOURCE.totalresearchers;
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create view if not exists TARGET.totalresearchersft as select * from SOURCE.totalresearchersft;
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create view if not exists TARGET.hrrst as select * from SOURCE.hrrst;
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drop table if exists TARGET.irish_funders;
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create TEMPORARY table TARGET.irish_funders as
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select distinct xpath_string(fundingtree[0].value, '//funder/name') as funder from GRAPHDB.project
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where xpath_string(fundingtree[0].value, '//funder/jurisdiction')='IE';
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--create TEMPORARY table TARGET.irish_funders as
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--select distinct name as funder from SOURCE.fundref where country='IE';
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drop table if exists TARGET.result;
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create table TARGET.result stored as parquet as
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select distinct * from SOURCE.result r where r.id in (select ro.id from SOURCE.result_organization ro
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left outer join SOURCE.organization o on o.id=ro.organization
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left outer join SOURCE.result_projects rp on rp.id=ro.id
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left outer join SOURCE.project p on p.id=rp.project
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join TARGET.irish_funders irf
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where o.country='IE' or p.funder=irf.funder);
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create view if not exists TARGET.category as select * from SOURCE.category;
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create view if not exists TARGET.concept as select * from SOURCE.concept;
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create view if not exists TARGET.context as select * from SOURCE.context;
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create view if not exists TARGET.country as select * from SOURCE.country;
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create view if not exists TARGET.countrygdp as select * from SOURCE.countrygdp;
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create view if not exists TARGET.creation_date as select * from SOURCE.creation_date;
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create table TARGET.funder stored as parquet as select * from SOURCE.funder where country='IE';
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create view if not exists TARGET.fundref as select * from SOURCE.fundref;
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create view if not exists TARGET.rndexpenditure as select * from SOURCE.rndexpediture;
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create view if not exists TARGET.rndgdpexpenditure as select * from SOURCE.rndgdpexpenditure;
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create view if not exists TARGET.doctoratestudents as select * from SOURCE.doctoratestudents;
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create view if not exists TARGET.totalresearchers as select * from SOURCE.totalresearchers;
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create view if not exists TARGET.totalresearchersft as select * from SOURCE.totalresearchersft;
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create view if not exists TARGET.hrrst as select * from SOURCE.hrrst;
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--create view if not exists TARGET.graduatedoctorates as select * from SOURCE.graduatedoctorates;
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create table TARGET.result_citations stored as parquet as select * from SOURCE.result_citations orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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create table TARGET.result_references_oc stored as parquet as select * from SOURCE.result_references_oc orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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create table TARGET.result_citations_oc stored as parquet as select * from SOURCE.result_citations_oc orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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create table TARGET.result_classifications stored as parquet as select * from SOURCE.result_classifications orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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create table TARGET.result_apc stored as parquet as select * from SOURCE.result_apc orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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create table TARGET.result_concepts stored as parquet as select * from SOURCE.result_concepts orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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create table TARGET.result_datasources stored as parquet as select * from SOURCE.result_datasources orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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create table TARGET.result_fundercount stored as parquet as select * from SOURCE.result_fundercount orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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create table TARGET.result_gold stored as parquet as select * from SOURCE.result_gold orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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create table TARGET.result_greenoa stored as parquet as select * from SOURCE.result_greenoa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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create table TARGET.result_languages stored as parquet as select * from SOURCE.result_languages orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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create table TARGET.result_licenses stored as parquet as select * from SOURCE.result_licenses orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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create table TARGET.licenses_normalized STORED AS PARQUET as select * from SOURCE.licenses_normalized;
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create table TARGET.result_oids stored as parquet as select * from SOURCE.result_oids orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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create table TARGET.result_organization stored as parquet as select * from SOURCE.result_organization orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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create table TARGET.result_peerreviewed stored as parquet as select * from SOURCE.result_peerreviewed orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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create table TARGET.result_pids stored as parquet as select * from SOURCE.result_pids orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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create table TARGET.result_projectcount stored as parquet as select * from SOURCE.result_projectcount orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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create table TARGET.result_projects stored as parquet as select * from SOURCE.result_projects orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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create table TARGET.result_refereed stored as parquet as select * from SOURCE.result_refereed orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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create table TARGET.result_sources stored as parquet as select * from SOURCE.result_sources orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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create table TARGET.result_topics stored as parquet as select * from SOURCE.result_topics orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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create table TARGET.result_fos stored as parquet as select * from SOURCE.result_fos orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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create table TARGET.result_accessroute stored as parquet as select * from SOURCE.result_accessroute orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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create table TARGET.result_instance stored as parquet as select * from SOURCE.result_instance orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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create table TARGET.result_orcid stored as parquet as select * from SOURCE.result_orcid orig where exists (select 1 from TARGET.result r where r.id=orig.id);
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create view TARGET.foo1 as select * from SOURCE.result_result rr where rr.source in (select id from TARGET.result);
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create view TARGET.foo2 as select * from SOURCE.result_result rr where rr.target in (select id from TARGET.result);
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create table TARGET.result_result STORED AS PARQUET as select distinct * from (select * from TARGET.foo1 union all select * from TARGET.foo2) foufou;
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drop view TARGET.foo1;
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drop view TARGET.foo2;
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-- datasources
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create view if not exists TARGET.datasource as select * from SOURCE.datasource;
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create view if not exists TARGET.datasource_oids as select * from SOURCE.datasource_oids;
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create view if not exists TARGET.datasource_organizations as select * from SOURCE.datasource_organizations;
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create view if not exists TARGET.datasource_sources as select * from SOURCE.datasource_sources;
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create table TARGET.datasource_results stored as parquet as select id as result, datasource as id from TARGET.result_datasources;
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-- organizations
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create view if not exists TARGET.organization as select * from SOURCE.organization;
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create view if not exists TARGET.organization_datasources as select * from SOURCE.organization_datasources;
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create view if not exists TARGET.organization_pids as select * from SOURCE.organization_pids;
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create view if not exists TARGET.organization_projects as select * from SOURCE.organization_projects;
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create view if not exists TARGET.organization_sources as select * from SOURCE.organization_sources;
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-- projects
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create view if not exists TARGET.project as select * from SOURCE.project;
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create view if not exists TARGET.project_oids as select * from SOURCE.project_oids;
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create view if not exists TARGET.project_organizations as select * from SOURCE.project_organizations;
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create view if not exists TARGET.project_resultcount as select * from SOURCE.project_resultcount;
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create view if not exists TARGET.project_classification as select * from SOURCE.project_classification;
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create view if not exists TARGET.project_organization_contribution as select * from SOURCE.project_organization_contribution;
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create table TARGET.project_results stored as parquet as select id as result, project as id from TARGET.result_projects;
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-- indicators
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-- Sprint 1 ----
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create table TARGET.indi_pub_green_oa stored as parquet as select * from SOURCE.indi_pub_green_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
|
||||
create table TARGET.indi_pub_grey_lit stored as parquet as select * from SOURCE.indi_pub_grey_lit orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
|
||||
create table TARGET.indi_pub_doi_from_crossref stored as parquet as select * from SOURCE.indi_pub_doi_from_crossref orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
|
||||
-- Sprint 2 ----
|
||||
create table TARGET.indi_result_has_cc_licence stored as parquet as select * from SOURCE.indi_result_has_cc_licence orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
|
||||
create table TARGET.indi_result_has_cc_licence_url stored as parquet as select * from SOURCE.indi_result_has_cc_licence_url orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
|
||||
create table TARGET.indi_pub_has_abstract stored as parquet as select * from SOURCE.indi_pub_has_abstract orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
|
||||
create table TARGET.indi_result_with_orcid stored as parquet as select * from SOURCE.indi_result_with_orcid orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
|
||||
---- Sprint 3 ----
|
||||
create table TARGET.indi_funded_result_with_fundref stored as parquet as select * from SOURCE.indi_funded_result_with_fundref orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
|
||||
create view TARGET.indi_result_org_collab as select * from SOURCE.indi_result_org_collab;
|
||||
create view TARGET.indi_result_org_country_collab as select * from SOURCE.indi_result_org_country_collab;
|
||||
create view TARGET.indi_project_collab_org as select * from SOURCE.indi_project_collab_org;
|
||||
create view TARGET.indi_project_collab_org_country as select * from SOURCE.indi_project_collab_org_country;
|
||||
create view TARGET.indi_funder_country_collab as select * from SOURCE.indi_funder_country_collab;
|
||||
create view TARGET.indi_result_country_collab as select * from SOURCE.indi_result_country_collab;
|
||||
---- Sprint 4 ----
|
||||
create table TARGET.indi_pub_diamond stored as parquet as select * from SOURCE.indi_pub_diamond orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
|
||||
create table TARGET.indi_pub_in_transformative stored as parquet as select * from SOURCE.indi_pub_in_transformative orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
|
||||
create table TARGET.indi_pub_closed_other_open stored as parquet as select * from SOURCE.indi_pub_closed_other_open orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
|
||||
---- Sprint 5 ----
|
||||
create table TARGET.indi_result_no_of_copies stored as parquet as select * from SOURCE.indi_result_no_of_copies orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
|
||||
---- Sprint 6 ----
|
||||
create table TARGET.indi_pub_hybrid_oa_with_cc stored as parquet as select * from SOURCE.indi_pub_hybrid_oa_with_cc orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
|
||||
create table TARGET.indi_pub_bronze_oa stored as parquet as select * from SOURCE.indi_pub_bronze_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
|
||||
create table TARGET.indi_pub_downloads stored as parquet as select * from SOURCE.indi_pub_downloads orig where exists (select 1 from TARGET.result r where r.id=orig.result_id);
|
||||
|
||||
create table TARGET.indi_pub_downloads_datasource stored as parquet as select * from SOURCE.indi_pub_downloads_datasource orig where exists (select 1 from TARGET.result r where r.id=orig.result_id);
|
||||
|
||||
create table TARGET.indi_pub_downloads_year stored as parquet as select * from SOURCE.indi_pub_downloads_year orig where exists (select 1 from TARGET.result r where r.id=orig.result_id);
|
||||
|
||||
create table TARGET.indi_pub_downloads_datasource_year stored as parquet as select * from SOURCE.indi_pub_downloads_datasource_year orig where exists (select 1 from TARGET.result r where r.id=orig.result_id);
|
||||
|
||||
---- Sprint 7 ----
|
||||
create table TARGET.indi_pub_gold_oa stored as parquet as select * from SOURCE.indi_pub_gold_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
|
||||
create table TARGET.indi_pub_hybrid stored as parquet as select * from SOURCE.indi_pub_hybrid orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
|
||||
create view TARGET.indi_org_fairness as select * from SOURCE.indi_org_fairness;
|
||||
create view TARGET.indi_org_fairness_pub_pr as select * from SOURCE.indi_org_fairness_pub_pr;
|
||||
create view TARGET.indi_org_fairness_pub_year as select * from SOURCE.indi_org_fairness_pub_year;
|
||||
create view TARGET.indi_org_fairness_pub as select * from SOURCE.indi_org_fairness_pub;
|
||||
create view TARGET.indi_org_fairness_year as select * from SOURCE.indi_org_fairness_year;
|
||||
create view TARGET.indi_org_findable_year as select * from SOURCE.indi_org_findable_year;
|
||||
create view TARGET.indi_org_findable as select * from SOURCE.indi_org_findable;
|
||||
create view TARGET.indi_org_openess as select * from SOURCE.indi_org_openess;
|
||||
create view TARGET.indi_org_openess_year as select * from SOURCE.indi_org_openess_year;
|
||||
create table TARGET.indi_pub_has_preprint stored as parquet as select * from SOURCE.indi_pub_has_preprint orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
|
||||
create table TARGET.indi_pub_in_subscribed stored as parquet as select * from SOURCE.indi_pub_in_subscribed orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
|
||||
create table TARGET.indi_result_with_pid stored as parquet as select * from SOURCE.indi_result_with_pid orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
|
||||
create table TARGET.indi_impact_measures stored as parquet as select * from SOURCE.indi_impact_measures orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
|
||||
create table TARGET.indi_pub_interdisciplinarity stored as parquet as select * from SOURCE.indi_pub_interdisciplinarity orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
|
||||
create table TARGET.result_apc_affiliations stored as parquet as select * from SOURCE.result_apc_affiliations orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
|
||||
create table TARGET.indi_is_project_result_after stored as parquet as select * from SOURCE.indi_is_project_result_after orig where exists (select 1 from TARGET.result r where r.id=orig.result_id);
|
||||
create view TARGET.indi_is_funder_plan_s as select * from SOURCE.indi_is_funder_plan_s;
|
||||
create view TARGET.indi_funder_fairness as select * from SOURCE.indi_funder_fairness;
|
||||
create view TARGET.indi_funder_openess as select * from SOURCE.indi_funder_openess;
|
||||
create view TARGET.indi_funder_findable as select * from SOURCE.indi_funder_findable;
|
||||
create view TARGET.indi_ris_fairness as select * from SOURCE.indi_ris_fairness;
|
||||
create view TARGET.indi_ris_openess as select * from SOURCE.indi_ris_openess;
|
||||
create view TARGET.indi_ris_findable as select * from SOURCE.indi_ris_findable;
|
||||
create table TARGET.indi_pub_green_with_license stored as parquet as select * from SOURCE.indi_pub_green_with_license orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
create table TARGET.result_country stored as parquet as select * from SOURCE.result_country orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
create table TARGET.indi_pub_publicly_funded stored as parquet as select * from SOURCE.indi_pub_publicly_funded orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
|
|
@ -0,0 +1,118 @@
|
|||
<workflow-app name="Irish Monitor Update" xmlns="uri:oozie:workflow:0.5">
|
||||
<parameters>
|
||||
<property>
|
||||
<name>stats_db_name</name>
|
||||
<description>the target stats database name</description>
|
||||
</property>
|
||||
<property>
|
||||
<name>graph_db_name</name>
|
||||
<description>the graph database name</description>
|
||||
</property>
|
||||
<property>
|
||||
<name>monitor_irish_db_name</name>
|
||||
<description>the target monitor db name</description>
|
||||
</property>
|
||||
<property>
|
||||
<name>monitor_irish_db_prod_name</name>
|
||||
<description>the name of the production monitor db</description>
|
||||
</property>
|
||||
<property>
|
||||
<name>monitor_irish_db_shadow_name</name>
|
||||
<description>the name of the shadow monitor db</description>
|
||||
</property>
|
||||
<property>
|
||||
<name>hive_metastore_uris</name>
|
||||
<description>hive server metastore URIs</description>
|
||||
</property>
|
||||
<property>
|
||||
<name>hive_jdbc_url</name>
|
||||
<description>hive server jdbc url</description>
|
||||
</property>
|
||||
<property>
|
||||
<name>hive_timeout</name>
|
||||
<description>the time period, in seconds, after which Hive fails a transaction if a Hive client has not sent a hearbeat. The default value is 300 seconds.</description>
|
||||
</property>
|
||||
<property>
|
||||
<name>hadoop_user_name</name>
|
||||
<description>user name of the wf owner</description>
|
||||
</property>
|
||||
</parameters>
|
||||
|
||||
<global>
|
||||
<job-tracker>${jobTracker}</job-tracker>
|
||||
<name-node>${nameNode}</name-node>
|
||||
<configuration>
|
||||
<property>
|
||||
<name>hive.metastore.uris</name>
|
||||
<value>${hive_metastore_uris}</value>
|
||||
</property>
|
||||
<property>
|
||||
<name>hive.txn.timeout</name>
|
||||
<value>${hive_timeout}</value>
|
||||
</property>
|
||||
<property>
|
||||
<name>mapred.job.queue.name</name>
|
||||
<value>analytics</value>
|
||||
</property>
|
||||
</configuration>
|
||||
</global>
|
||||
|
||||
<start to="resume_from"/>
|
||||
<decision name="resume_from">
|
||||
<switch>
|
||||
<case to="Step1-buildIrishMonitorDB">${wf:conf('resumeFrom') eq 'Step1-buildIrishMonitorDB'}</case>
|
||||
<case to="Step2-copyDataToImpalaCluster">${wf:conf('resumeFrom') eq 'Step2-copyDataToImpalaCluster'}</case>
|
||||
<case to="Step3-finalizeImpalaCluster">${wf:conf('resumeFrom') eq 'Step3-finalizeImpalaCluster'}</case>
|
||||
<default to="Step1-buildIrishMonitorDB"/>
|
||||
</switch>
|
||||
</decision>
|
||||
|
||||
<kill name="Kill">
|
||||
<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
|
||||
</kill>
|
||||
|
||||
<action name="Step1-buildIrishMonitorDB">
|
||||
<shell xmlns="uri:oozie:shell-action:0.1">
|
||||
<job-tracker>${jobTracker}</job-tracker>
|
||||
<name-node>${nameNode}</name-node>
|
||||
<exec>monitor_irish.sh</exec>
|
||||
<argument>${stats_db_name}</argument>
|
||||
<argument>${monitor_irish_db_name}</argument>
|
||||
<argument>${monitor_irish_db_shadow_name}</argument>
|
||||
<argument>${wf:appPath()}/scripts/buildIrishMonitorDB.sql</argument>
|
||||
<argument>${graph_db_name}</argument>
|
||||
<file>monitor_irish.sh</file>
|
||||
</shell>
|
||||
<ok to="Step2-copyDataToImpalaCluster"/>
|
||||
<error to="Kill"/>
|
||||
</action>
|
||||
|
||||
<action name="Step2-copyDataToImpalaCluster">
|
||||
<shell xmlns="uri:oozie:shell-action:0.1">
|
||||
<job-tracker>${jobTracker}</job-tracker>
|
||||
<name-node>${nameNode}</name-node>
|
||||
<exec>copyDataToImpalaCluster.sh</exec>
|
||||
<argument>${monitor_irish_db_name}</argument>
|
||||
<argument>${hadoop_user_name}</argument>
|
||||
<file>copyDataToImpalaCluster.sh</file>
|
||||
</shell>
|
||||
<ok to="Step3-finalizeImpalaCluster"/>
|
||||
<error to="Kill"/>
|
||||
</action>
|
||||
|
||||
<action name="Step3-finalizeImpalaCluster">
|
||||
<shell xmlns="uri:oozie:shell-action:0.1">
|
||||
<job-tracker>${jobTracker}</job-tracker>
|
||||
<name-node>${nameNode}</name-node>
|
||||
<exec>finalizeImpalaCluster.sh</exec>
|
||||
<argument>${monitor_irish_db_name}</argument>
|
||||
<argument>${monitor_irish_db_prod_name}</argument>
|
||||
<argument>${monitor_irish_db_shadow_name}</argument>
|
||||
<file>finalizeImpalaCluster.sh</file>
|
||||
</shell>
|
||||
<ok to="End"/>
|
||||
<error to="Kill"/>
|
||||
</action>
|
||||
|
||||
<end name="End"/>
|
||||
</workflow-app>
|
||||
Loading…
Reference in New Issue