forked from D-Net/dnet-hadoop
removed duplicate code HttpConnector.java
This commit is contained in:
parent
cda210a2ca
commit
ffb092b8d3
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@ -1,20 +0,0 @@
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package eu.dnetlib.dhp.actionmanager.project.httpconnector;
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import java.util.LinkedList;
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public class CollectorPluginErrorLogList extends LinkedList<String> {
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private static final long serialVersionUID = -6925786561303289704L;
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@Override
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public String toString() {
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String log = new String();
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int index = 0;
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for (String errorMessage : this) {
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log += String.format("Retry #%s: %s / ", index++, errorMessage);
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}
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return log;
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}
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}
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@ -1,20 +0,0 @@
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package eu.dnetlib.dhp.actionmanager.project.httpconnector;
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public class CollectorServiceException extends Exception {
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private static final long serialVersionUID = 7523999812098059764L;
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public CollectorServiceException(String string) {
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super(string);
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}
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public CollectorServiceException(String string, Throwable exception) {
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super(string, exception);
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}
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public CollectorServiceException(Throwable exception) {
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super(exception);
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}
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}
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@ -1,240 +0,0 @@
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package eu.dnetlib.dhp.actionmanager.project.httpconnector;
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import java.io.IOException;
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import java.io.InputStream;
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import java.net.*;
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import java.security.GeneralSecurityException;
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import java.security.cert.X509Certificate;
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import java.util.List;
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import java.util.Map;
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import javax.net.ssl.HttpsURLConnection;
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import javax.net.ssl.SSLContext;
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import javax.net.ssl.TrustManager;
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import javax.net.ssl.X509TrustManager;
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import org.apache.commons.io.IOUtils;
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import org.apache.commons.lang3.math.NumberUtils;
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import org.apache.commons.logging.Log;
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import org.apache.commons.logging.LogFactory;
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/**
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* @author jochen, michele, andrea
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*/
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public class HttpConnector {
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private static final Log log = LogFactory.getLog(HttpConnector.class);
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private int maxNumberOfRetry = 6;
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private int defaultDelay = 120; // seconds
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private int readTimeOut = 120; // seconds
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private String responseType = null;
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private String userAgent = "Mozilla/5.0 (compatible; OAI; +http://www.openaire.eu)";
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public HttpConnector() {
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CookieHandler.setDefault(new CookieManager(null, CookiePolicy.ACCEPT_ALL));
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}
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/**
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* Given the URL returns the content via HTTP GET
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*
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* @param requestUrl the URL
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* @return the content of the downloaded resource
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* @throws CollectorServiceException when retrying more than maxNumberOfRetry times
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*/
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public String getInputSource(final String requestUrl) throws CollectorServiceException {
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return attemptDownlaodAsString(requestUrl, 1, new CollectorPluginErrorLogList());
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}
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/**
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* Given the URL returns the content as a stream via HTTP GET
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*
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* @param requestUrl the URL
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* @return the content of the downloaded resource as InputStream
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* @throws CollectorServiceException when retrying more than maxNumberOfRetry times
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*/
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public InputStream getInputSourceAsStream(final String requestUrl) throws CollectorServiceException {
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return attemptDownload(requestUrl, 1, new CollectorPluginErrorLogList());
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}
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private String attemptDownlaodAsString(final String requestUrl, final int retryNumber,
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final CollectorPluginErrorLogList errorList)
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throws CollectorServiceException {
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try {
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InputStream s = attemptDownload(requestUrl, 1, new CollectorPluginErrorLogList());
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try {
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return IOUtils.toString(s);
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} catch (IOException e) {
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log.error("error while retrieving from http-connection occured: " + requestUrl, e);
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Thread.sleep(defaultDelay * 1000);
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errorList.add(e.getMessage());
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return attemptDownlaodAsString(requestUrl, retryNumber + 1, errorList);
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} finally {
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IOUtils.closeQuietly(s);
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}
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} catch (InterruptedException e) {
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throw new CollectorServiceException(e);
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}
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}
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private InputStream attemptDownload(final String requestUrl, final int retryNumber,
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final CollectorPluginErrorLogList errorList)
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throws CollectorServiceException {
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if (retryNumber > maxNumberOfRetry) {
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throw new CollectorServiceException("Max number of retries exceeded. Cause: \n " + errorList);
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}
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log.debug("Downloading " + requestUrl + " - try: " + retryNumber);
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try {
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InputStream input = null;
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try {
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final HttpURLConnection urlConn = (HttpURLConnection) new URL(requestUrl).openConnection();
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urlConn.setInstanceFollowRedirects(false);
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urlConn.setReadTimeout(readTimeOut * 1000);
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urlConn.addRequestProperty("User-Agent", userAgent);
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if (log.isDebugEnabled()) {
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logHeaderFields(urlConn);
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}
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int retryAfter = obtainRetryAfter(urlConn.getHeaderFields());
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if (retryAfter > 0 && urlConn.getResponseCode() == HttpURLConnection.HTTP_UNAVAILABLE) {
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log.warn("waiting and repeating request after " + retryAfter + " sec.");
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Thread.sleep(retryAfter * 1000);
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errorList.add("503 Service Unavailable");
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urlConn.disconnect();
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return attemptDownload(requestUrl, retryNumber + 1, errorList);
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} else if ((urlConn.getResponseCode() == HttpURLConnection.HTTP_MOVED_PERM)
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|| (urlConn.getResponseCode() == HttpURLConnection.HTTP_MOVED_TEMP)) {
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final String newUrl = obtainNewLocation(urlConn.getHeaderFields());
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log.debug("The requested url has been moved to " + newUrl);
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errorList
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.add(
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String
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.format(
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"%s %s. Moved to: %s", urlConn.getResponseCode(), urlConn.getResponseMessage(),
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newUrl));
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urlConn.disconnect();
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return attemptDownload(newUrl, retryNumber + 1, errorList);
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} else if (urlConn.getResponseCode() != HttpURLConnection.HTTP_OK) {
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log
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.error(
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String
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.format("HTTP error: %s %s", urlConn.getResponseCode(), urlConn.getResponseMessage()));
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Thread.sleep(defaultDelay * 1000);
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errorList.add(String.format("%s %s", urlConn.getResponseCode(), urlConn.getResponseMessage()));
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urlConn.disconnect();
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return attemptDownload(requestUrl, retryNumber + 1, errorList);
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} else {
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input = urlConn.getInputStream();
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responseType = urlConn.getContentType();
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return input;
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}
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} catch (IOException e) {
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log.error("error while retrieving from http-connection occured: " + requestUrl, e);
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Thread.sleep(defaultDelay * 1000);
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errorList.add(e.getMessage());
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return attemptDownload(requestUrl, retryNumber + 1, errorList);
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}
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} catch (InterruptedException e) {
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throw new CollectorServiceException(e);
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}
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}
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private void logHeaderFields(final HttpURLConnection urlConn) throws IOException {
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log.debug("StatusCode: " + urlConn.getResponseMessage());
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for (Map.Entry<String, List<String>> e : urlConn.getHeaderFields().entrySet()) {
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if (e.getKey() != null) {
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for (String v : e.getValue()) {
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log.debug(" key: " + e.getKey() + " - value: " + v);
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}
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}
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}
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}
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private int obtainRetryAfter(final Map<String, List<String>> headerMap) {
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for (String key : headerMap.keySet()) {
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if ((key != null) && key.toLowerCase().equals("retry-after") && (headerMap.get(key).size() > 0)
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&& NumberUtils.isCreatable(headerMap.get(key).get(0))) {
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return Integer
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.parseInt(headerMap.get(key).get(0)) + 10;
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}
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}
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return -1;
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}
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private String obtainNewLocation(final Map<String, List<String>> headerMap) throws CollectorServiceException {
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for (String key : headerMap.keySet()) {
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if ((key != null) && key.toLowerCase().equals("location") && (headerMap.get(key).size() > 0)) {
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return headerMap.get(key).get(0);
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}
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}
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throw new CollectorServiceException("The requested url has been MOVED, but 'location' param is MISSING");
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}
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/**
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* register for https scheme; this is a workaround and not intended for the use in trusted environments
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*/
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public void initTrustManager() {
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final X509TrustManager tm = new X509TrustManager() {
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@Override
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public void checkClientTrusted(final X509Certificate[] xcs, final String string) {
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}
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@Override
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public void checkServerTrusted(final X509Certificate[] xcs, final String string) {
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}
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@Override
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public X509Certificate[] getAcceptedIssuers() {
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return null;
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}
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};
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try {
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final SSLContext ctx = SSLContext.getInstance("TLS");
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ctx.init(null, new TrustManager[] {
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tm
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}, null);
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HttpsURLConnection.setDefaultSSLSocketFactory(ctx.getSocketFactory());
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} catch (GeneralSecurityException e) {
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log.fatal(e);
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throw new IllegalStateException(e);
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}
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}
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public int getMaxNumberOfRetry() {
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return maxNumberOfRetry;
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}
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public void setMaxNumberOfRetry(final int maxNumberOfRetry) {
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this.maxNumberOfRetry = maxNumberOfRetry;
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}
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public int getDefaultDelay() {
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return defaultDelay;
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}
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public void setDefaultDelay(final int defaultDelay) {
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this.defaultDelay = defaultDelay;
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}
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public int getReadTimeOut() {
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return readTimeOut;
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}
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public void setReadTimeOut(final int readTimeOut) {
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this.readTimeOut = readTimeOut;
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}
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public String getResponseType() {
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return responseType;
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}
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}
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@ -17,7 +17,7 @@ import org.apache.hadoop.fs.Path;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import eu.dnetlib.dhp.actionmanager.project.httpconnector.HttpConnector;
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import eu.dnetlib.dhp.collection.worker.utils.HttpConnector;
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import eu.dnetlib.dhp.application.ArgumentApplicationParser;
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/**
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@ -4,6 +4,7 @@ package eu.dnetlib.dhp.actionmanager.project.utils;
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import java.io.*;
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import java.nio.charset.StandardCharsets;
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import eu.dnetlib.dhp.collection.worker.utils.HttpConnector;
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import org.apache.commons.io.IOUtils;
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import org.apache.commons.logging.Log;
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import org.apache.commons.logging.LogFactory;
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@ -14,7 +15,7 @@ import org.apache.hadoop.fs.Path;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import eu.dnetlib.dhp.actionmanager.project.httpconnector.HttpConnector;
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import eu.dnetlib.dhp.application.ArgumentApplicationParser;
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/**
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@ -43,6 +43,106 @@ public class GenerateNativeStoreSparkJob {
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private static final Logger log = LoggerFactory.getLogger(GenerateNativeStoreSparkJob.class);
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public static void main(String[] args) throws Exception {
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final ArgumentApplicationParser parser = new ArgumentApplicationParser(
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IOUtils
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.toString(
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GenerateNativeStoreSparkJob.class
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.getResourceAsStream(
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"/eu/dnetlib/dhp/collection/collection_input_parameters.json")));
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parser.parseArgument(args);
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final ObjectMapper jsonMapper = new ObjectMapper();
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final Provenance provenance = jsonMapper.readValue(parser.get("provenance"), Provenance.class);
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final long dateOfCollection = new Long(parser.get("dateOfCollection"));
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Boolean isSparkSessionManaged = Optional
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.ofNullable(parser.get("isSparkSessionManaged"))
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.map(Boolean::valueOf)
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.orElse(Boolean.TRUE);
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log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
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final Map<String, String> ongoingMap = new HashMap<>();
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final Map<String, String> reportMap = new HashMap<>();
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final boolean test = parser.get("isTest") == null ? false : Boolean.valueOf(parser.get("isTest"));
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SparkConf conf = new SparkConf();
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runWithSparkSession(
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conf,
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isSparkSessionManaged,
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spark -> {
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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final JavaPairRDD<IntWritable, Text> inputRDD = sc
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.sequenceFile(parser.get("input"), IntWritable.class, Text.class);
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final LongAccumulator totalItems = sc.sc().longAccumulator("TotalItems");
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final LongAccumulator invalidRecords = sc.sc().longAccumulator("InvalidRecords");
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final MessageManager manager = new MessageManager(
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parser.get("rabbitHost"),
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parser.get("rabbitUser"),
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parser.get("rabbitPassword"),
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false,
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false,
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null);
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final JavaRDD<MetadataRecord> mappeRDD = inputRDD
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.map(
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item -> parseRecord(
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item._2().toString(),
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parser.get("xpath"),
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parser.get("encoding"),
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provenance,
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dateOfCollection,
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totalItems,
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invalidRecords))
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.filter(Objects::nonNull)
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.distinct();
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ongoingMap.put("ongoing", "0");
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if (!test) {
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manager
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.sendMessage(
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new Message(
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parser.get("workflowId"), "DataFrameCreation", MessageType.ONGOING, ongoingMap),
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parser.get("rabbitOngoingQueue"),
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true,
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false);
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}
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final Encoder<MetadataRecord> encoder = Encoders.bean(MetadataRecord.class);
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final Dataset<MetadataRecord> mdstore = spark.createDataset(mappeRDD.rdd(), encoder);
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final LongAccumulator mdStoreRecords = sc.sc().longAccumulator("MDStoreRecords");
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mdStoreRecords.add(mdstore.count());
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ongoingMap.put("ongoing", "" + totalItems.value());
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if (!test) {
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manager
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.sendMessage(
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new Message(
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parser.get("workflowId"), "DataFrameCreation", MessageType.ONGOING, ongoingMap),
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parser.get("rabbitOngoingQueue"),
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true,
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false);
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}
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mdstore.write().format("parquet").save(parser.get("output"));
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reportMap.put("inputItem", "" + totalItems.value());
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reportMap.put("invalidRecords", "" + invalidRecords.value());
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reportMap.put("mdStoreSize", "" + mdStoreRecords.value());
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if (!test) {
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manager
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.sendMessage(
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new Message(parser.get("workflowId"), "Collection", MessageType.REPORT, reportMap),
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parser.get("rabbitReportQueue"),
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true,
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false);
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manager.close();
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}
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});
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}
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public static MetadataRecord parseRecord(
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final String input,
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final String xpath,
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@ -73,103 +173,5 @@ public class GenerateNativeStoreSparkJob {
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}
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}
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public static void main(String[] args) throws Exception {
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final ArgumentApplicationParser parser = new ArgumentApplicationParser(
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IOUtils
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.toString(
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GenerateNativeStoreSparkJob.class
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.getResourceAsStream(
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"/eu/dnetlib/dhp/collection/collection_input_parameters.json")));
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parser.parseArgument(args);
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final ObjectMapper jsonMapper = new ObjectMapper();
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final Provenance provenance = jsonMapper.readValue(parser.get("provenance"), Provenance.class);
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final long dateOfCollection = new Long(parser.get("dateOfCollection"));
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Boolean isSparkSessionManaged = Optional
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.ofNullable(parser.get("isSparkSessionManaged"))
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.map(Boolean::valueOf)
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.orElse(Boolean.TRUE);
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log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
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final Map<String, String> ongoingMap = new HashMap<>();
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final Map<String, String> reportMap = new HashMap<>();
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final boolean test = parser.get("isTest") == null ? false : Boolean.valueOf(parser.get("isTest"));
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SparkConf conf = new SparkConf();
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runWithSparkSession(
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conf,
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isSparkSessionManaged,
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spark -> {
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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final JavaPairRDD<IntWritable, Text> inputRDD = sc
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.sequenceFile(parser.get("input"), IntWritable.class, Text.class);
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final LongAccumulator totalItems = sc.sc().longAccumulator("TotalItems");
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final LongAccumulator invalidRecords = sc.sc().longAccumulator("InvalidRecords");
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final MessageManager manager = new MessageManager(
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parser.get("rabbitHost"),
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parser.get("rabbitUser"),
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parser.get("rabbitPassword"),
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false,
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false,
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null);
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final JavaRDD<MetadataRecord> mappeRDD = inputRDD
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.map(
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item -> parseRecord(
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item._2().toString(),
|
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parser.get("xpath"),
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parser.get("encoding"),
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provenance,
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dateOfCollection,
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totalItems,
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invalidRecords))
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.filter(Objects::nonNull)
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.distinct();
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ongoingMap.put("ongoing", "0");
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if (!test) {
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manager
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.sendMessage(
|
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new Message(
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parser.get("workflowId"), "DataFrameCreation", MessageType.ONGOING, ongoingMap),
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parser.get("rabbitOngoingQueue"),
|
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true,
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false);
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}
|
||||
|
||||
final Encoder<MetadataRecord> encoder = Encoders.bean(MetadataRecord.class);
|
||||
final Dataset<MetadataRecord> mdstore = spark.createDataset(mappeRDD.rdd(), encoder);
|
||||
final LongAccumulator mdStoreRecords = sc.sc().longAccumulator("MDStoreRecords");
|
||||
mdStoreRecords.add(mdstore.count());
|
||||
ongoingMap.put("ongoing", "" + totalItems.value());
|
||||
if (!test) {
|
||||
manager
|
||||
.sendMessage(
|
||||
new Message(
|
||||
parser.get("workflowId"), "DataFrameCreation", MessageType.ONGOING, ongoingMap),
|
||||
parser.get("rabbitOngoingQueue"),
|
||||
true,
|
||||
false);
|
||||
}
|
||||
mdstore.write().format("parquet").save(parser.get("output"));
|
||||
reportMap.put("inputItem", "" + totalItems.value());
|
||||
reportMap.put("invalidRecords", "" + invalidRecords.value());
|
||||
reportMap.put("mdStoreSize", "" + mdStoreRecords.value());
|
||||
if (!test) {
|
||||
manager
|
||||
.sendMessage(
|
||||
new Message(parser.get("workflowId"), "Collection", MessageType.REPORT, reportMap),
|
||||
parser.get("rabbitReportQueue"),
|
||||
true,
|
||||
false);
|
||||
manager.close();
|
||||
}
|
||||
});
|
||||
|
||||
}
|
||||
}
|
||||
|
|
|
|||
|
|
@ -6,14 +6,15 @@ import java.nio.file.Files;
|
|||
import java.nio.file.Path;
|
||||
import java.util.List;
|
||||
|
||||
import eu.dnetlib.dhp.collection.worker.DnetCollectorException;
|
||||
import eu.dnetlib.dhp.collection.worker.utils.HttpConnector;
|
||||
import org.apache.poi.openxml4j.exceptions.InvalidFormatException;
|
||||
import org.junit.jupiter.api.Assertions;
|
||||
import org.junit.jupiter.api.BeforeAll;
|
||||
import org.junit.jupiter.api.Disabled;
|
||||
import org.junit.jupiter.api.Test;
|
||||
|
||||
import eu.dnetlib.dhp.actionmanager.project.httpconnector.CollectorServiceException;
|
||||
import eu.dnetlib.dhp.actionmanager.project.httpconnector.HttpConnector;
|
||||
|
||||
import eu.dnetlib.dhp.actionmanager.project.utils.EXCELParser;
|
||||
|
||||
@Disabled
|
||||
|
|
@ -30,7 +31,7 @@ public class EXCELParserTest {
|
|||
}
|
||||
|
||||
@Test
|
||||
public void test1() throws CollectorServiceException, IOException, InvalidFormatException, ClassNotFoundException,
|
||||
public void test1() throws DnetCollectorException, IOException, InvalidFormatException, ClassNotFoundException,
|
||||
IllegalAccessException, InstantiationException {
|
||||
|
||||
EXCELParser excelParser = new EXCELParser();
|
||||
|
|
|
|||
|
|
@ -1,6 +1,8 @@
|
|||
|
||||
package eu.dnetlib.dhp.actionmanager.project.httpconnector;
|
||||
|
||||
import eu.dnetlib.dhp.collection.worker.DnetCollectorException;
|
||||
import eu.dnetlib.dhp.collection.worker.utils.HttpConnector;
|
||||
import org.apache.commons.logging.Log;
|
||||
import org.apache.commons.logging.LogFactory;
|
||||
import org.apache.http.conn.ssl.SSLConnectionSocketFactory;
|
||||
|
|
@ -29,12 +31,12 @@ public class HttpConnectorTest {
|
|||
|
||||
@Test
|
||||
|
||||
public void testGetInputSource() throws CollectorServiceException {
|
||||
public void testGetInputSource() throws DnetCollectorException {
|
||||
System.out.println(connector.getInputSource(URL));
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testGoodServers() throws CollectorServiceException {
|
||||
public void testGoodServers() throws DnetCollectorException {
|
||||
System.out.println(connector.getInputSource(URL_GOODSNI_SERVER));
|
||||
}
|
||||
|
||||
|
|
|
|||
|
|
@ -1,7 +1,7 @@
|
|||
<xsl:stylesheet xmlns:xsl="http://www.w3.org/1999/XSL/Transform"
|
||||
xmlns:oai="http://www.openarchives.org/OAI/2.0/"
|
||||
xmlns:oaf="http://namespace.openaire.eu/oaf"
|
||||
xmlns:eg="http://eu/dnetlib/trasform/extension"
|
||||
xmlns:dnetFunction="http://eu/dnetlib/trasform/extension"
|
||||
version="2.0"
|
||||
exclude-result-prefixes="xsl">
|
||||
<xsl:template match="/">
|
||||
|
|
@ -9,7 +9,7 @@
|
|||
<xsl:copy-of select="//oai:header"/>
|
||||
<metadata>
|
||||
<xsl:for-each select="//*[local-name()='subject']">
|
||||
<subject><xsl:value-of select="eg:clean(.,'dnet:languages')"/></subject>
|
||||
<subject><xsl:value-of select="dnetFunction:clean(.,'dnet:languages')"/></subject>
|
||||
</xsl:for-each>
|
||||
</metadata>
|
||||
<oaf:about>
|
||||
|
|
|
|||
Loading…
Reference in New Issue